Michael S. Waterman

79 papers A 2B 21Journal 47Unranked 6

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	Levenshtein Distance, Sequence Comparison and Biological Database Search. IEEE Trans. Inf. Theory Bonnie Berger, Michael S. Waterman, Yun William Yu
2021	J	`jnl`	Multiscale Feedback Loops in SARS-CoV-2 Viral Evolution. J. Comput. Biol. Christopher L. Barrett, Andrei C. Bura, Qijun He, Fenix W. D. Huang, Thomas J. X. Li, Michael S. Waterman, Christian M. Reidys
2021	J	`jnl`	The Human Genome Project: the Beginning of the Beginning. Quant. Biol. Michael S. Waterman
2019	J	`jnl`	A new statistic for efficient detection of repetitive sequences. Bioinform. Sijie Chen, Yixin Chen, Fengzhu Sun, Michael S. Waterman, Xuegong Zhang
2018	J	`jnl`	Generalized correlation measure using count statistics for gene expression data with ordered samples. Bioinform. Y. X. Rachel Wang, Ke Liu, Elizabeth Theusch, Jerome I. Rotter, Marisa W. Medina, Michael S. Waterman, Haiyan Huang
2017	J	`jnl`	CAFE: aCcelerated Alignment-FrEe sequence analysis. Nucleic Acids Res. Yang Young Lu, Kujin Tang, Jie Ren, Jed A. Fuhrman, Michael S. Waterman, Fengzhu Sun
2014	J	`jnl`	DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Res. Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou
2014	J	`jnl`	New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing. Briefings Bioinform. Kai Song, Jie Ren, Gesine Reinert, Minghua Deng, Michael S. Waterman, Fengzhu Sun
2013	J	`jnl`	A Geometric Interpretation for Local Alignment-Free Sequence Comparison. J. Comput. Biol. Ehsan Behnam, Michael S. Waterman, Andrew D. Smith
2012	J	`jnl`	Normal and Compound Poisson Approximations for Pattern Occurrences in NGS Reads. J. Comput. Biol. Zhiyuan Zhai, Gesine Reinert, Kai Song, Michael S. Waterman, Yihui Luan, Fengzhu Sun
2011	J	`jnl`	Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation. PLoS Comput. Biol. Wenyuan Li, Chun-Chi Liu, Tong Zhang, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou
2011	J	`jnl`	Sequence Alignment as Hypothesis Testing. J. Comput. Biol. Lu Meng, Fengzhu Sun, Xuegong Zhang, Michael S. Waterman
2010	J	`jnl`	Alignment-Free Sequence Comparison (II): Theoretical Power of Comparison Statistics. J. Comput. Biol. Lin Wan, Gesine Reinert, Fengzhu Sun, Michael S. Waterman
2010	J	`jnl`	An integrative modular approach to systematically predict gene-phenotype associations. BMC Bioinform. Michael R. Mehan, Juan Nunez-Iglesias, Chao Dai, Michael S. Waterman, Xianghong Jasmine Zhou
2010	J	`jnl`	The Power of Detecting Enriched Patterns: An HMM Approach. J. Comput. Biol. Zhiyuan Zhai, Shih-Yen Ku, Yihui Luan, Gesine Reinert, Michael S. Waterman, Fengzhu Sun
2009	J	`jnl`	Alignment-Free Sequence Comparison (I): Statistics and Power. J. Comput. Biol. Gesine Reinert, David Chew, Fengzhu Sun, Michael S. Waterman
2009	J	`jnl`	An Integrative Network Approach to Map the Transcriptome to the Phenome. J. Comput. Biol. Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou
2009	J	`jnl`	HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome. Bioinform. Jong Hyun Kim, Woo-Cheol Kim, Michael S. Waterman, Sanghyun Park, Lei M. Li
2009	J	`jnl`	New Generations: Sequencing Machines and Their Computational Challenges. J. Comput. Sci. Technol. David C. Schwartz, Michael S. Waterman
2009	J	`jnl`	The Seventh Asia Pacific Bioinformatics Conference (APBC2009). BMC Bioinform. Michael Q. Zhang, Michael S. Waterman, Xuegong Zhang
2008	B	`conf`	An Integrative Network Approach to Map the Transcriptome to the Phenome. RECOMB Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou
2007	J	`jnl`	A Quantile Method for Sizing Optical Maps. J. Comput. Biol. Haifeng Li, Anton Valouev, David C. Schwartz, Michael S. Waterman, Lei M. Li
2007	—	`conf`	A graph-based approach to systematically reconstruct human transcriptional regulatory modules. ISMB/ECCB (Supplement of Bioinformatics) Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou
2007	J	`jnl`	Accuracy Assessment of Diploid Consensus Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. Jong Hyun Kim, Michael S. Waterman, Lei M. Li
2007	J	`jnl`	Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Res. Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias, Kangyu Zhang, Kiran Kamath, Michael S. Waterman, Caleb E. Finch, Xianghong Jasmine Zhou
2007	J	`jnl`	On the Length of the Longest Exact Position Match in a Random Sequence. IEEE ACM Trans. Comput. Biol. Bioinform. Gesine Reinert, Michael S. Waterman
2007	—	`conf`	Systematic discovery of functional modules and context-specific functional annotation of human genome. ISMB/ECCB (Supplement of Bioinformatics) Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou
2006	J	`jnl`	Alignment of Optical Maps. J. Comput. Biol. Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman
2006	J	`jnl`	Integrative missing value estimation for microarray data. BMC Bioinform. Jianjun Hu, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou
2006	J	`jnl`	Refinement of optical map assemblies. Bioinform. Anton Valouev, Yu Zhang, David C. Schwartz, Michael S. Waterman
2006	B	`ed.`	Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings RECOMB Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2006	B	`conf`	Stan Ulam and Computational Biology. RECOMB Michael S. Waterman
2006	B	`conf`	Whole Genome Optical Mapping. APBC Michael S. Waterman
2005	B	`conf`	Alignment of Optical Maps. RECOMB Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman
2005	J	`jnl`	HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinform. Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun
2005	B	`ed.`	Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings RECOMB Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2004	—	`ed.`	Computational Methods for SNPs and Haplotype Inference, DIMACS/RECOMB Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised Papers Computational Methods for SNPs and Haplotype Inference Sorin Istrail, Michael S. Waterman, Andrew G. Clark
2004	J	`jnl`	Haplotype Reconstruction from SNP Alignment. J. Comput. Biol. Lei M. Li, Jong Hyun Kim, Michael S. Waterman
2003	J	`jnl`	An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences. J. Comput. Biol. Yu Zhang, Michael S. Waterman
2003	B	`conf`	Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data. RECOMB Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen
2003	—	`conf`	Eulerian Path Methods for Multiple Sequence Alignment. CSB Michael S. Waterman, Yu Zhang
2003	B	`conf`	Haplotype reconstruction from SNP alignment. RECOMB Lei M. Li, Jong Hyun Kim, Michael S. Waterman
2003	B	`ed.`	Proceedings of the Sventh Annual International Conference on Computational Biology, RECOMB 2003, Berlin, Germany, April 10-13, 2003 RECOMB Martin Vingron, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, Webb Miller
2002	—	`conf`	Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. Computational Methods for SNPs and Haplotype Inference Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun
2002	B	`ed.`	Proceedings of the Sixth Annual International Conference on Computational Biology, RECOMB 2002, Washington, DC, USA, April 18-21, 2002 RECOMB Gene Myers, Sridhar Hannenhalli, David Sankoff, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2002	J	`jnl`	Zinc Finger Gene Clusters and Tandem Gene Duplication. J. Comput. Biol. Mengxiang Tang, Michael S. Waterman, Shibu Yooseph
2001	B	`conf`	A new approach to fragment assembly in DNA sequencing. RECOMB Pavel A. Pevzner, Haixu Tang, Michael S. Waterman
2001	B	`conf`	Zinc finger gene clusters and tandem gene duplication. RECOMB Mengxiang Tang, Michael S. Waterman, Shibu Yooseph
2000	J	`jnl`	Probabilistic and Statistical Properties of Words: An Overview. J. Comput. Biol. Gesine Reinert, Sophie Schbath, Michael S. Waterman
2000	B	`ed.`	Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, Tokyo, Japan, April 8-11, 2000 RECOMB Ron Shamir, Satoru Miyano, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
1999	—	`ed.`	Mathematical Support for Molecular Biology, Proceedings from the DIMACS Special Year, 1998. Mathematical Support for Molecular Biology Martin Farach-Colton, Fred S. Roberts, Martin Vingron, Michael S. Waterman
1999	B	`ed.`	Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, RECOMB 1999, Lyon, France, April 11-14, 1999 RECOMB Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
1998	J	`jnl`	Estimation for Restriction Sites Observed by Optical Mapping Using Reversible-Jump Markov Chain Monte Carlo J. Comput. Biol. Jae Kyu Lee, Vlado Dancík, Michael S. Waterman
1998	B	`conf`	Estimation for restriction sites observed by optical mapping using reversible-jump Markov chain Monte Carlo. RECOMB Jae Kyu Lee, Vlado Dancík, Michael S. Waterman
1998	B	`ed.`	Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, RECOMB 1998, New York, NY, USA, March 22-25, 1998 RECOMB Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
1997	B	`conf`	Chimeric alignment by dynamic programming: algorithm and biological uses. RECOMB George A. Komatsoulis, Michael S. Waterman
1997	J	`jnl`	Pooling Strategies for Establishing Physical Genome Maps Using FISH. J. Comput. Biol. Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman
1997	B	`conf`	Pooling strategies for establishing physical genome maps using FISH. RECOMB Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman
1997	B	`ed.`	Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, RECOMB 1997, Santa Fe, NM, USA, January 20-23, 1997 RECOMB Michael S. Waterman
1997	J	`jnl`	Selected Papers from RECOMB'97 - Preface. J. Comput. Biol. Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner
1996	J	`jnl`	Alignment Networks and Electrical Networks. Discret. Appl. Math. Martin Vingron, Michael S. Waterman
1996	J	`jnl`	Poisson Process Approximation for Sequence Repeats and Sequencing by Hybridization. J. Comput. Biol. Richard Arratia, Daniela Martin, Gesine Reinert, Michael S. Waterman
1995	J	`jnl`	A New Algorithm for DNA Sequence Assembly. J. Comput. Biol. Ramana M. Idury, Michael S. Waterman
1995	—	`book`	Introduction to computational biology - maps, sequences, and genomes: interdisciplinary statistics. Michael S. Waterman
1995	J	`jnl`	Multiple Filtration and Approximate Pattern Matching. Algorithmica Pavel A. Pevzner, Michael S. Waterman
1995	—	`conf`	Open Combinatorial Problems in Computational Molecular Biology. ISTCS Pavel A. Pevzner, Michael S. Waterman
1994	J	`jnl`	Approximations to Profile Score Distributions. J. Comput. Biol. Larry Goldstein, Michael S. Waterman
1994	J	`jnl`	Linear Trees and RNA Secondary Structure. Discret. Appl. Math. William R. Schmitt, Michael S. Waterman
1993	B	`conf`	A Fast Filtration Algorithm for the Substring Matching Problem. CPM Pavel A. Pevzner, Michael S. Waterman
1993	A	`conf`	Sequence Comparison and Statistical Significance in Molecular Biology (Abstract). ESA Michael S. Waterman
1992	J	`jnl`	Dynamic programming algorithms for restriction map comparison. Comput. Appl. Biosci. X. Huang, Michael S. Waterman
1992	B	`conf`	Matrix Longest Common Subsequence Problem, Duality and Hibert Bases. CPM Pavel A. Pevzner, Michael S. Waterman
1991	A	`conf`	A systolic array processor for biological information signal processing. ICS E. T. Chow, John C. Peterson, Michael S. Waterman, Tim Hunkapiller, Barbara A. Zimmermann
1991	—	`conf`	Biological information signal processor. ASAP E. T. Chow, Tim Hunkapiller, J. Peterson, Michael S. Waterman
1990	J	`jnl`	On the number of alignments of Graphs Comb. Jerrold R. Griggs, Phil Hanlon, Andrew M. Odlyzko, Michael S. Waterman
1984	J	`jnl`	Algorithms for restriction map comparisons. Nucleic Acids Res. Michael S. Waterman, Temple F. Smith, H. L. Katcher
1984	J	`jnl`	On the statistical significance of nucleic acid similarities. Nucleic Acids Res. David J. Lipman, W. John Wilbur, Temple F. Smith, Michael S. Waterman
1984	J	`jnl`	Technical Note - Determining All Optimal and Near-Optimal Solutions when Solving Shortest Path Problems by Dynamic Programming. Oper. Res. Thomas H. Byers, Michael S. Waterman
1979	J	`jnl`	On some new sequences generalizing the Catalan and Motzkin numbers. Discret. Math. P. R. Stein, Michael S. Waterman