Michael R. Brent

32 papers A* 6A 1B 3Journal 15Unranked 7
YearRankTypeTitle / Venue / Authors
2026 J jnl
Finding Significant Hits in Networks: a network-based tool for analyzing gene-level
Briefings Bioinform.
Sandeep Acharya, Vaha Akbary Moghaddam, Wooseok J. Jung, Yu S. Kang, Shu Liao, Michael A. Province, Michael R. Brent
2023 J jnl
NetProphet 3: a machine learning framework for transcription factor network mapping and multi-omics integration.
Bioinform.
Dhoha Abid, Michael R. Brent
2021 J jnl
Inferring TF activities and activity regulators from gene expression data with constraints from TF perturbation data.
Bioinform.
Cynthia Z. Ma, Michael R. Brent
2018 J jnl
NetProphet 2.0: mapping transcription factor networks by exploiting scalable data resources.
Bioinform.
Yiming Kang, Hien-Haw Liow, Ezekiel J. Maier, Michael R. Brent
2017 — conf
Model-based Transcriptome Engineering.
BCB
Michael R. Brent
2011 B conf
A Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription.
RECOMB
Sooraj KuttyKrishnan, Jeffrey Sabina, Laura Langton, Mark Johnston, Michael R. Brent
2009 J jnl
Benchmarking regulatory network reconstruction with GRENDEL.
Bioinform.
Brian C. Haynes, Michael R. Brent
2009 A* conf
Constrained optimization for validation-guided conditional random field learning.
KDD
Minmin Chen, Yixin Chen, Michael R. Brent, Aaron E. Tenney
2009 B conf
Gradient-Based Feature Selection for Conditional Random Fields and its Applications in Computational Genetics.
ICTAI
Minmin Chen, Yixin Chen, Michael R. Brent, Aaron E. Tenney
2009 J jnl
Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner.
Bioinform.
David V. Lu, Randall H. Brown, Manimozhiyan Arumugam, Michael R. Brent
2008 A* conf
CRF-OPT: An Efficient High-Quality Conditional Random Field Solver.
AAAI
Minmin Chen, Yixin Chen, Michael R. Brent
2007 J jnl
The Treeterbi and Parallel Treeterbi algorithms: efficient, optimal decoding for ordinary, generalized and pair HMMs.
Bioinform.
Evan Keibler, Manimozhiyan Arumugam, Michael R. Brent
2006 J jnl
Using ESTs to improve the accuracy of
BMC Bioinform.
Chaochun Wei, Michael R. Brent
2006 J jnl
Using Multiple Alignments to Improve Gene Prediction.
J. Comput. Biol.
Samuel S. Gross, Michael R. Brent
2005 J jnl
Gene finding in the chicken genome.
BMC Bioinform.
Eduardo Eyras, Alexandre Reymond, Robert Castelo, Jacqueline M. Bye, Francisco Camara, Paul Flicek, Elizabeth J. Huckle, Genis Parra, David D. Shteynberg, Carine Wyss, Jane Rogers, Stylianos E. Antonarakis, Ewan Birney, Roderic Guigó, Michael R. Brent
2005 B conf
Using Multiple Alignments to Improve Gene Prediction.
RECOMB
Samuel S. Gross, Michael R. Brent
2003 J jnl
Eval: A software package for analysis of genome annotations.
BMC Bioinform.
Evan Keibler, Michael R. Brent
2002 — conf
A Probabilistic Model for Learning Concatenative Morphology.
NIPS
Matthew G. Snover, Michael R. Brent
2002 — conf
Unsupervised Learning of Morphology Using a Novel Directed Search Algorithm: Taking the First Step.
SIGMORPHON
Matthew G. Snover, Gaja Jarosz, Michael R. Brent
2001 A* conf
A Bayesian Model for Morpheme and Paradigm Identification.
ACL
Matthew G. Snover, Michael R. Brent
2001 A* conf
Chinese Text Segmentation With MBDP-1: Making the Most of Training Corpora.
ACL
Michael R. Brent, Xiaopeng Tao
2001 — conf
Integrating genomic homology into gene structure prediction.
ISMB (Supplement of Bioinformatics)
Ian Korf, Paul Flicek, Daniel Duan, Michael R. Brent
1999 J jnl
An Efficient, Probabilistically Sound Algorithm for Segmentation and Word Discovery
CoRR
Michael R. Brent
1999 J jnl
An Efficient, Probabilistically Sound Algorithm for Segmentation and Word Discovery.
Mach. Learn.
Michael R. Brent
1996 — conf
Lexical categorization: fitting template grammars by incremental MDL optimization.
ICGI
Michael R. Brent, Timothy A. Cartwright
1994 — conf
Segmenting Speech Without a Lexicon: The Roles of Phonotactics and Speech Source.
SIGMORPHON
Timothy A. Cartwright, Michael R. Brent
1994 J jnl
Segmenting speech without a lexicon: The roles of phonotactics and speech source.
CoRR
Timothy A. Cartwright, Michael R. Brent
1993 J jnl
From Grammar to Lexicon: Unsupervised Learning of Lexical Syntax.
Comput. Linguistics
Michael R. Brent
1991 — conf
Automatic Acquisition of Subcategorization Frames from Tagged Text.
HLT
Michael R. Brent, Robert C. Berwick
1991 A* conf
Automatic Acquisition of Subcategorization Frames from Untagged Text.
ACL
Michael R. Brent
1991 A conf
Automatic Semantic Classification Of Verbs From Their Syntactic Contexts: An Implemented Classifier For Stativity.
EACL
Michael R. Brent
1990 A* conf
A Simplified Theory of Tense Representations and Constraints on their Composition.
ACL
Michael R. Brent