Michael L. Hines

54 papers A 2C 1Misc 2Journal 40Unranked 5

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	Modernizing the NEURON Simulator for Sustainability, Portability, and Performance. Frontiers Neuroinformatics Omar Awile, Pramod S. Kumbhar, Nicolas Cornu, Salvador Dura-Bernal, James Gonzalo King, Olli Lupton, Ioannis Magkanaris, Robert A. McDougal, Adam J. H. Newton, Fernando Pereira, Alexandru Savulescu, Nicholas T. Carnevale, William W. Lytton, Michael L. Hines, Felix Schürmann
2020	—	`conf`	An Optimizing Multi-platform Source-to-source Compiler Framework for the NEURON MODeling Language. ICCS (1) Pramod S. Kumbhar, Omar Awile, Liam Keegan, Jorge Blanco Alonso, James Gonzalo King, Michael L. Hines, Felix Schürmann
2020	—	`conf`	Fully-Asynchronous Fully-Implicit Variable-Order Variable-Timestep Simulation of Neural Networks. ICCS (5) Bruno R. C. Magalhães, Michael L. Hines, Thomas Sterling, Felix Schürmann
2019	J	`jnl`	An optimizing multi-platform source-to-source compiler framework for the NEURON MODeling Language. CoRR Pramod S. Kumbhar, Omar Awile, Liam Keegan, Jorge Blanco Alonso, James Gonzalo King, Michael L. Hines, Felix Schürmann
2019	J	`jnl`	Asynchronous Branch-Parallel Simulation of Detailed Neuron Models. Frontiers Neuroinformatics Bruno R. C. Magalhães, Thomas Sterling, Michael L. Hines, Felix Schürmann
2019	J	`jnl`	CoreNEURON : An Optimized Compute Engine for the NEURON Simulator. Frontiers Neuroinformatics Pramod S. Kumbhar, Michael L. Hines, Jeremy Fouriaux, Aleksandr Ovcharenko, James Gonzalo King, Fabien Delalondre, Felix Schürmann
2019	A	`conf`	Exploiting Flow Graph of System of ODEs to Accelerate the Simulation of Biologically-Detailed Neural Networks. IPDPS Bruno R. C. Magalhães, Thomas Sterling, Felix Schürmann, Michael L. Hines
2019	—	`conf`	Fully-Asynchronous Cache-Efficient Simulation of Detailed Neural Networks. ICCS (3) Bruno R. C. Magalhães, Thomas Sterling, Michael L. Hines, Felix Schürmann
2019	J	`jnl`	Fully-Asynchronous Fully-Implicit Variable-Order Variable-Timestep Simulation of Neural Networks. CoRR Bruno R. C. Magalhães, Michael L. Hines, Thomas Sterling, Felix Schürmann
2018	J	`jnl`	Code Generation in Computational Neuroscience: A Review of Tools and Techniques. Frontiers Neuroinformatics Inga Blundell, Romain Brette, Thomas A. Cleland, Thomas G. Close, Daniel Coca, Andrew P. Davison, Sandra Diaz-Pier, Carlos Fernandez Musoles, Padraig Gleeson, Dan F. M. Goodman, Michael L. Hines, Michael W. Hopkins, Pramod S. Kumbhar, David R. Lester, Bóris Marin, Abigail Morrison, Eric Müller, Thomas Nowotny, Alexander Peyser, Dimitri Plotnikov, Paul Richmond, Andrew Rowley, Bernhard Rumpe, Marcel Stimberg, Alan B. Stokes, Adam R. Tomkins, Guido Trensch, Michael Marmaduke Woodman, Jochen Martin Eppler
2018	J	`jnl`	Using NEURON for Reaction-Diffusion Modeling of Extracellular Dynamics. Frontiers Neuroinformatics Adam J. H. Newton, Robert A. McDougal, Michael L. Hines, William W. Lytton
2017	J	`jnl`	Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons. J. Simulation Zhongwei Lin, Carl Tropper, Yiping Yao, Robert A. McDougal, Mohammand Nazrul Ishlam Patoary, William W. Lytton, Michael L. Hines
2017	J	`jnl`	Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons. ACM Trans. Model. Comput. Simul. Zhongwei Lin, Carl Tropper, Robert A. McDougal, Mohammand Nazrul Ishlam Patoary, William W. Lytton, Yiping Yao, Michael L. Hines
2017	J	`jnl`	Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. J. Comput. Neurosci. Robert A. McDougal, Thomas M. Morse, Ted Carnevale, Luis N. Marenco, Rixin Wang, Michele Migliore, Perry L. Miller, Gordon M. Shepherd, Michael L. Hines
2016	J	`jnl`	Glomerular and Mitral-Granule Cell Microcircuits Coordinate Temporal and Spatial Information Processing in the Olfactory Bulb. Frontiers Comput. Neurosci. Francesco Cavarretta, Addolorata Marasco, Michael L. Hines, Gordon M. Shepherd, Michele Migliore
2016	C	`conf`	Leveraging a Cluster-Booster Architecture for Brain-Scale Simulations. ISC Pramod S. Kumbhar, Michael L. Hines, Aleksandr Ovcharenko, Damián A. Mallón, James Gonzalo King, Florentino Sainz, Felix Schürmann, Fabien Delalondre
2016	J	`jnl`	Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Comput. William W. Lytton, Alexandra Seidenstein, Salvador Dura-Bernal, Robert A. McDougal, Felix Schürmann, Michael L. Hines
2015	J	`jnl`	ModelView for ModelDB: Online Presentation of Model Structure. Neuroinformatics Robert A. McDougal, Thomas M. Morse, Michael L. Hines, Gordon M. Shepherd
2015	—	`conf`	NTW-MT: a Multi-threaded Simulator for Reaction Diffusion Simulations in NEURON. SIGSIM-PADS Zhongwei Lin, Carl Tropper, Mohammand Nazrul Ishlam Patoary, Robert A. McDougal, William W. Lytton, Michael L. Hines
2015	J	`jnl`	Neuronal Calcium Wave Propagation Varies with Changes in Endoplasmic Reticulum Parameters: A Computer Model. Neural Comput. Samuel A. Neymotin, Robert A. McDougal, Mohamed A. Sherif, Christopher P. Fall, Michael L. Hines, William W. Lytton
2015	J	`jnl`	Python in neuroscience. Frontiers Neuroinformatics Eilif B. Müller, James A. Bednar, Markus Diesmann, Marc-Oliver Gewaltig, Michael L. Hines, Andrew P. Davison
2015	—	`conf`	Simulating Morphologically Detailed Neuronal Networks at Extreme Scale. PARCO Aleksandr Ovcharenko, Pramod S. Kumbhar, Michael L. Hines, Francesco Cremonesi, Timothée Ewart, Stuart Yates, Felix Schürmann, Fabien Delalondre
2014	J	`jnl`	Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb. Frontiers Comput. Neurosci. Michele Migliore, Francesco Cavarretta, Michael L. Hines, Gordon M. Shepherd
2014	—	`ch.`	ModelDB. Encyclopedia of Computational Neuroscience Robert A. McDougal, Rixin Wang, Thomas M. Morse, Michele Migliore, Luis N. Marenco, Ted Carnevale, Michael L. Hines, Gordon M. Shepherd
2014	—	`ch.`	NEURON Simulation Environment. Encyclopedia of Computational Neuroscience Michael L. Hines, Ted Carnevale
2014	—	`ch.`	Numerical Integration Methods. Encyclopedia of Computational Neuroscience Michael L. Hines, Ted Carnevale
2014	—	`ch.`	SenseLab: Integration of Multidisciplinary Neuroscience Data. Encyclopedia of Computational Neuroscience Gordon M. Shepherd, Thomas M. Morse, Luis N. Marenco, Kei-Hoi Cheung, Ted Carnevale, Michele Migliore, Robert A. McDougal, Michael L. Hines, Perry L. Miller
2013	J	`jnl`	Reaction-diffusion in the NEURON simulator. Frontiers Neuroinformatics Robert A. McDougal, Michael L. Hines, William W. Lytton
2013	J	`jnl`	Sparse Distributed Representation of Odors in a Large-scale Olfactory Bulb Circuit. PLoS Comput. Biol. Yuguo Yu, Thomas S. McTavish, Michael L. Hines, Gordon M. Shepherd, Cesare Valenti, Michele Migliore
2012	J	`jnl`	Mitral cell spike synchrony modulated by dendrodendritic synapse location. Frontiers Comput. Neurosci. Thomas S. McTavish, Michele Migliore, Gordon M. Shepherd, Michael L. Hines
2011	J	`jnl`	Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer. Frontiers Comput. Neurosci. Michael L. Hines, Sameer Kumar, Felix Schürmann
2010	J	`jnl`	NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail. PLoS Comput. Biol. Padraig Gleeson, Sharon M. Crook, Robert C. Cannon, Michael L. Hines, Guy O. Billings, Matteo Farinella, Thomas M. Morse, Andrew P. Davison, Subhasis Ray, Upinder S. Bhalla, Simon R. Barnes, Yoana D. Dimitrova, Angus Silver
2010	A	`conf`	Optimization of applications with non-blocking neighborhood collectives via multisends on the Blue Gene/P supercomputer. IPDPS Sameer Kumar, Philip Heidelberger, Dong Chen, Michael L. Hines
2009	J	`jnl`	A component-based extension framework for large-scale parallel simulations in NEURON. Frontiers Neuroinformatics James Gonzalo King, Michael L. Hines, Sean L. Hill, Philip H. Goodman, Henry Markram, Felix Schürmann
2009	J	`jnl`	NEURON and Python. Frontiers Neuroinformatics Michael L. Hines, Andrew P. Davison, Eilif B. Müller
2008	J	`jnl`	Fully implicit parallel simulation of single neurons. J. Comput. Neurosci. Michael L. Hines, Henry Markram, Felix Schürmann
2008	J	`jnl`	Just-in-Time Connectivity for Large Spiking Networks. Neural Comput. William W. Lytton, Ahmet Omurtag, Samuel A. Neymotin, Michael L. Hines
2008	J	`jnl`	Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors. J. Comput. Neurosci. Michael L. Hines, Hubert Eichner, Felix Schürmann
2007	J	`jnl`	Interoperability of Neuroscience Modeling Software: Current Status and Future Directions. Neuroinformatics Robert C. Cannon, Marc-Oliver Gewaltig, Padraig Gleeson, Upinder S. Bhalla, Hugo Cornelis, Michael L. Hines, Fredrick W. Howell, Eilif B. Muller, Joel R. Stiles, Stefan Wils, Erik De Schutter
2007	J	`jnl`	Simulation of networks of spiking neurons: A review of tools and strategies. J. Comput. Neurosci. Romain Brette, Michelle Rudolph, Ted Carnevale, Michael L. Hines, David Beeman, James M. Bower, Markus Diesmann, Abigail Morrison, Philip H. Goodman, Frederick C. Harris Jr., Milind Zirpe, Thomas Natschläger, Dejan Pecevski, Bard Ermentrout, Mikael Djurfeldt, Anders Lansner, Olivier Rochel, Thierry Viéville, Eilif B. Muller, Andrew P. Davison, Sami El Boustani, Alain Destexhe
2006	J	`jnl`	Parallel network simulations with NEURON. J. Comput. Neurosci. Michele Migliore, C. Cannia, William W. Lytton, Henry Markram, Michael L. Hines
2005	J	`jnl`	Independent Variable Time-Step Integration of Individual Neurons for Network Simulations. Neural Comput. William W. Lytton, Michael L. Hines
2005	J	`jnl`	The Role of Distal Dendritic Gap Junctions in Synchronization of Mitral Cell Axonal Output. J. Comput. Neurosci. Michele Migliore, Michael L. Hines, Gordon M. Shepherd
2004	J	`jnl`	Discrete event simulation in the NEURON environment. Neurocomputing Michael L. Hines, Nicholas T. Carnevale
2004	J	`jnl`	ModelDB: A Database to Support Computational Neuroscience. J. Comput. Neurosci. Michael L. Hines, Thomas M. Morse, Michele Migliore, Nicholas T. Carnevale, Gordon M. Shepherd
2004	J	`jnl`	Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation. Neuroinformatics Andrew P. Davison, Thomas M. Morse, Michele Migliore, Gordon M. Shepherd, Michael L. Hines
2003	Misc	`conf`	Creating Knowledgebases to Text-Mine PUBMED Articles Using Clustering Techniques. AMIA Chiquito J. Crasto, Thomas M. Morse, Michele Migliore, Prakash M. Nadkarni, Michael L. Hines, Douglas E. Brash, Perry L. Miller, Gordon M. Shepherd
2003	J	`jnl`	ModelDB - Making models publicly accessible to support computational neuroscience. Neuroinformatics Michele Migliore, Thomas M. Morse, Andrew P. Davison, Luis N. Marenco, Gordon M. Shepherd, Michael L. Hines
2003	J	`jnl`	Towards effective and rewarding data sharing. Neuroinformatics Daniel Gardner, Arthur W. Toga, Giorgio A. Ascoli, Jackson T. Beatty, James F. Brinkley, Anders M. Dale, Peter T. Fox, Esther P. Gardner, John S. George, Nigel H. Goddard, Kristen M. Harris, Edward Herskovits, Michael L. Hines, Gwen A. Jacobs, Russell E. Jacobs, Edward G. Jones, David N. Kennedy, Daniel Y. Kimberg, John C. Mazziotta, Perry L. Miller, Susumu Mori, David C. Mountain, Allan L. Reiss, Glenn D. Rosen, David A. Rottenberg, Gordon M. Shepherd, Neil R. Smalheiser, Kenneth P. Smith, Tom Strachan, David C. Van Essen, Robert W. Williams, Stephen T. C. Wong
2001	J	`jnl`	NEOSIM: Portable large-scale plug and play modelling. Neurocomputing Nigel H. Goddard, Greg Hood, Fredrick W. Howell, Michael L. Hines, Erik De Schutter
2001	J	`jnl`	Synthesis of Research: Integration of Multidisciplinary Sensory Data: A Pilot Model of the Human Brain Project Approach. J. Am. Medical Informatics Assoc. Perry L. Miller, Prakash M. Nadkarni, Michael S. Singer, Luis N. Marenco, Michael L. Hines, Gordon M. Shepherd
2000	J	`jnl`	Expanding NEURON's Repertoire of Mechanisms with NMODL. Neural Comput. Michael L. Hines, Nicholas T. Carnevale
1998	Misc	`conf`	Acquiring, Storing and Retrieving Diverse Biomedical Data Using the World-Wide-Web: The SenseLab Paradigm. AMIA Emmanouil Skoufos, Jason S. Mirsky, Matthew D. Healy, Michael S. Singer, Michael L. Hines, Prakash M. Nakardi, Perry L. Miller, Gordon M. Shepherd
1997	J	`jnl`	The NEURON Simulation Environment. Neural Comput. Michael L. Hines, Nicholas T. Carnevale