Michael Krauthammer

112 papers A* 1A 1B 1C 1Misc 15Journal 67Unranked 26
YearRankTypeTitle / Venue / Authors
2026 J jnl
Repurposing Protein Language Models for Latent Flow-Based Fitness Optimization.
CoRR
Amaru Caceres Arroyo, Lea Bogensperger, Ahmed Allam, Michael Krauthammer, Konrad Schindler, Dominik Narnhofer
2026 J jnl
Structure is Supervision: Multiview Masked Autoencoders for Radiology.
Trans. Mach. Learn. Res.
Sonia Laguna, Andrea Agostini, Alain Ryser, Samuel Ruipérez-Campillo, Irene Cannistraci, Moritz Vandenhirtz, Stephan Mandt, Nicolas Deperrois, Farhad Nooralahzadeh, Michael Krauthammer, Thomas M. Sutter, Julia E. Vogt
2025 A* conf
A Variational Perspective on Generative Protein Fitness Optimization.
ICML
Lea Bogensperger, Dominik Narnhofer, Ahmed Allam, Konrad Schindler, Michael Krauthammer
2025 J jnl
A Variational Perspective on Generative Protein Fitness Optimization.
CoRR
Lea Bogensperger, Dominik Narnhofer, Ahmed Allam, Konrad Schindler, Michael Krauthammer
2025 J jnl
A consensus statement on the use of digital twins in medicine.
npj Digit. Medicine
Jeffrey David Iqbal, Michael Krauthammer, Claudia M. Witt, Nikola Biller-Andorno, Markus Christen
2025 J jnl
Agentic Systems in Radiology: Design, Applications, Evaluation, and Challenges.
CoRR
Christian Bluethgen, Dave Van Veen, Daniel Truhn, Jakob Nikolas Kather, Michael Moor, Malgorzata Polacin, Akshay Chaudhari, Thomas Frauenfelder, Curtis P. Langlotz, Michael Krauthammer, Farhad Nooralahzadeh
2025 J jnl
Deep hierarchical subtyping of multi-organ systemic sclerosis trajectories - a EUSTAR study.
npj Digit. Medicine
Cécile Trottet, Manuel Schürch, Ahmed Allam, Liubov Petelytska, Ivan Castellví, Radim Becvár, Jeska de Vries-Bouwstra, Florenzo Iannone, Patricia Carreira, Marie-Elise Truchetet, Giovanna Cuomo, Elena Rezus, Francesco Paolo Cantatore, Carmen Pilar Simeón-Aznar, Magda Parvu, Marta Dzhus, Oliver Distler, Anna-Maria Hoffmann-Vold, Michael Krauthammer, EUSTAR collaborators
2025 J jnl
Deep learning for automated organ activity profiling in sarcoidosis.
Briefings Bioinform.
Sonja Katz, Bowen Fan, Michael Krauthammer, Jakob Nilsson
2025 J jnl
Enhancing Radiology Report Generation and Visual Grounding using Reinforcement Learning.
CoRR
Benjamin Gundersen, Nicolas Deperrois, Samuel Ruipérez-Campillo, Thomas M. Sutter, Julia E. Vogt, Michael Moor, Farhad Nooralahzadeh, Michael Krauthammer
2025 J jnl
Enhancing post-kidney transplant prognostication: an interpretable machine learning approach for longitudinal outcome prediction.
npj Digit. Medicine
Bowen Fan, Manuel Schürch, Yuan Tian, Anna Mallone, Lukas Frischknecht, Michael Koller, Christian Van Delden, Alexander Leichtle, Dela Golshayan, Jean Villard, Thomas Schachtner, Daniel Sidler, Stefan Schaub, Jakob Nilsson, Michael Krauthammer, Swiss Transplant Cohort Study
2025 J jnl
Leveraging the Structure of Medical Data for Improved Representation Learning.
CoRR
Andrea Agostini, Sonia Laguna, Alain Ryser, Samuel Ruipérez-Campillo, Moritz Vandenhirtz, Nicolas Deperrois, Farhad Nooralahzadeh, Michael Krauthammer, Thomas M. Sutter, Julia E. Vogt
2025 — conf
NTCIR-18 RadNLP 2024 Overview: Dataset and Solutions forAutomated Lung Cancer Staging.
NTCIR
Yuta Nakamura, Koji Fujimoto, Jonas Kluckert, Michael Krauthammer, Jun Kanzawa, Akira Katayama, Tomohiro Kikuchi, Ryo Kurokawa, Wataru Gonoi, Yuki Tashiro, Shouhei Hanaoka, Shuntaro Yada, Eiji Aramaki
2025 J jnl
Optimizing Speech Language Models for Acoustic Consistency.
CoRR
Morteza Rohanian, Michael Krauthammer
2025 J jnl
RadVLM: A Multitask Conversational Vision-Language Model for Radiology.
CoRR
Nicolas Deperrois, Hidetoshi Matsuo, Samuel Ruipérez-Campillo, Moritz Vandenhirtz, Sonia Laguna, Alain Ryser, Koji Fujimoto, Mizuho Nishio, Thomas M. Sutter, Julia E. Vogt, Jonas Kluckert, Thomas Frauenfelder, Christian Blüthgen, Farhad Nooralahzadeh, Michael Krauthammer
2025 J jnl
Structure is Supervision: Multiview Masked Autoencoders for Radiology.
CoRR
Sonia Laguna, Andrea Agostini, Alain Ryser, Samuel Ruipérez-Campillo, Irene Cannistraci, Moritz Vandenhirtz, Stephan Mandt, Nicolas Deperrois, Farhad Nooralahzadeh, Michael Krauthammer, Thomas M. Sutter, Julia E. Vogt
2025 J jnl
TAMER: A Test-Time Adaptive MoE-Driven Framework for EHR Representation Learning.
CoRR
Yinghao Zhu, Xiaochen Zheng, Ahmed Allam, Michael Krauthammer
2025 J jnl
Towards Scalable and Cross-Lingual Specialist Language Models for Oncology.
CoRR
Morteza Rohanian, Tarun Mehra, Nicola Miglino, Farhad Nooralahzadeh, Michael Krauthammer, Andreas Wicki
2025 J jnl
Uncertainty Modeling in Multimodal Speech Analysis Across the Psychosis Spectrum.
CoRR
Morteza Rohanian, Roya M. Hüppi, Farhad Nooralahzadeh, Noemi Dannecker, Yves Pauli, Werner Surbeck, Iris Sommer, Wolfram Hinzen, Nicolas Langer, Michael Krauthammer, Philipp Homan
2024 J jnl
Clustering of Disease Trajectories with Explainable Machine Learning: A Case Study on Postoperative Delirium Phenotypes.
CoRR
Xiaochen Zheng, Manuel Schürch, Xingyu Chen, Maria Angeliki Komninou, Reto Schüpbach, Ahmed Allam, Jan Bartussek, Michael Krauthammer
2024 — conf
DDoS: A Graph neural Network Based Drug Synergy Prediction Algorithm.
CHIL
Kyriakos Schwarz, Alicia Pliego-Mendieta, Amina Mollaysa, Lara Planas-Paz, Chantal Pauli, Ahmed Allam, Michael Krauthammer
2024 J jnl
Fragmentstein - facilitating data reuse for cell-free DNA fragment analysis.
Bioinform.
Zsolt Balázs, Todor Gitchev, Ivna Ivankovic, Michael Krauthammer
2024 — conf
Learning Personalized Treatment Decisions in Precision Medicine: Disentangling Treatment Assignment Bias in Counterfactual Outcome Prediction and Biomarker Identification.
ML4H@NeurIPS
Michael Vollenweider, Manuel Schürch, Chiara Rohrer, Gabriele Gut, Michael Krauthammer, Andreas Wicki
2024 J jnl
Learning Personalized Treatment Decisions in Precision Medicine: Disentangling Treatment Assignment Bias in Counterfactual Outcome Prediction and Biomarker Identification.
CoRR
Michael Vollenweider, Manuel Schürch, Chiara Rohrer, Gabriele Gut, Michael Krauthammer, Andreas Wicki
2024 J jnl
Rethinking Molecular Design: Integrating Latent Variable and Auto-Regressive Models for Goal Directed Generation.
CoRR
Heath Arthur-Loui, Amina Mollaysa, Michael Krauthammer
2024 — conf
Semi-Supervised Generative Models for Disease Trajectories: A Case Study on Systemic Sclerosis.
MLHC
Cécile Trottet, Manuel Schürch, Ahmed Allam, Imon Barua, Liubov Petelytska, Oliver Distler, Anna-Maria Hoffmann-Vold, Michael Krauthammer
2024 J jnl
Semi-Supervised Generative Models for Disease Trajectories: A Case Study on Systemic Sclerosis.
CoRR
Cécile Trottet, Manuel Schürch, Ahmed Allam, Imon Barua, Liubov Petelytska, Oliver Distler, Anna-Maria Hoffmann-Vold, Michael Krauthammer, EUSTAR collaborators
2024 Misc conf
Simple Contrastive Representation Learning for Time Series Forecasting.
ICASSP
Xiaochen Zheng, Xingyu Chen, Manuel Schürch, Amina Mollaysa, Ahmed Allam, Michael Krauthammer
2024 J jnl
Towards AI-Based Precision Oncology: A Machine Learning Framework for Personalized Counterfactual Treatment Suggestions based on Multi-Omics Data.
CoRR
Manuel Schürch, Laura Boos, Viola Heinzelmann-Schwarz, Gabriele Gut, Michael Krauthammer, Andreas Wicki, Tumor Profiler Consortium
2023 J jnl
Attention-based Multi-task Learning for Base Editor Outcome Prediction.
CoRR
Amina Mollaysa, Ahmed Allam, Michael Krauthammer
2023 J jnl
Attention-based Multi-task Learning for Base Editor Outcome Prediction.
CoRR
Amina Mollaysa, Ahmed Allam, Michael Krauthammer
2023 — conf
Boosting Radiology Report Generation by Infusing Comparison Prior.
BioNLP@ACL
Sanghwan Kim, Farhad Nooralahzadeh, Morteza Rohanian, Koji Fujimoto, Mizuho Nishio, Ryo Sakamoto, Fabio Rinaldi, Michael Krauthammer
2023 J jnl
Boosting Radiology Report Generation by Infusing Comparison Prior.
CoRR
Sanghwan Kim, Farhad Nooralahzadeh, Morteza Rohanian, Koji Fujimoto, Mizuho Nishio, Ryo Sakamoto, Fabio Rinaldi, Michael Krauthammer
2023 — conf
Classification of cancer TNM stage from Japanese radiology report using on-premise LLM at NTCIR-17 MedNLP-SC RR-TNM subtask.
NTCIR
Koji Fujimoto, Mizuho Nishio, Chikako Tanaka, Morteza Rohanian, Farhad Nooralahzadeh, Michael Krauthammer, Fabio Rinaldi
2023 — conf
Disfluent Cues for Enhanced Speech Understanding in Large Language Models.
EMNLP (Findings)
Morteza Rohanian, Farhad Nooralahzadeh, Omid Rohanian, David A. Clifton, Michael Krauthammer
2023 J jnl
Dynamic Local Attention with Hierarchical Patching for Irregular Clinical Time Series.
CoRR
Xingyu Chen, Xiaochen Zheng, Amina Mollaysa, Manuel Schürch, Ahmed Allam, Michael Krauthammer
2023 J jnl
Exploratory Analysis of Federated Learning Methods with Differential Privacy on MIMIC-III.
CoRR
Aron N. Horvath, Matteo Berchier, Farhad Nooralahzadeh, Ahmed Allam, Michael Krauthammer
2023 J jnl
Generating Personalized Insulin Treatments Strategies with Deep Conditional Generative Time Series Models.
CoRR
Manuel Schürch, Xiang Li, Ahmed Allam, Giulia Rathmes, Amina Mollaysa, Claudia Cavelti-Weder, Michael Krauthammer
2023 J jnl
Modeling Complex Disease Trajectories using Deep Generative Models with Semi-Supervised Latent Processes.
CoRR
Cécile Trottet, Manuel Schürch, Ahmed Allam, Imon Barua, Liubov Petelytska, Oliver Distler, Anna-Maria Hoffmann-Vold, Michael Krauthammer, EUSTAR collaborators
2023 J jnl
Radiology-Aware Model-Based Evaluation Metric for Report Generation.
CoRR
Amos Calamida, Farhad Nooralahzadeh, Morteza Rohanian, Koji Fujimoto, Mizuho Nishio, Michael Krauthammer
2023 J jnl
SimTS: Rethinking Contrastive Representation Learning for Time Series Forecasting.
CoRR
Xiaochen Zheng, Xingyu Chen, Manuel Schürch, Amina Mollaysa, Ahmed Allam, Michael Krauthammer
2023 — conf
Zero-shot classification of TNM staging for Japanese radiology report using ChatGPT at RR-TNM subtask of NTCIR-17 MedNLP-SC.
NTCIR
Mizuho Nishio, Hidetoshi Matsuo, Takaaki Matsunaga, Koji Fujimoto, Morteza Rohanian, Farhad Nooralahzadeh, Fabio Rinaldi, Michael Krauthammer
2022 — conf
Approach for Named Entity Recognition and Case Identification Implemented by ZuKyo-JA Sub-team at the NTCIR-16 Real-MedNLP Task.
NTCIR
Koji Fujimoto, Mizuho Nishio, Osamu Sugiyama, Kana Ichikawa, Joseph Cornelius, Oscar Lithgow-Serrano, Vani Kanjirangat, Fabio Rinaldi, Aron N. Horvath, Farhad Nooralahzadeh, Michael Krauthammer
2022 J jnl
DDoS: A Graph Neural Network based Drug Synergy Prediction Algorithm.
CoRR
Kyriakos Schwarz, Alicia Pliego-Mendieta, Lara Planas-Paz, Chantal Pauli, Ahmed Allam, Michael Krauthammer
2022 — conf
Leveraging Token-Based Concept Information and Data Augmentation in Few-Resource NER: ZuKyo-EN at the NTCIR-16 Real-MedNLP task.
NTCIR
Joseph Cornelius, Oscar Lithgow-Serrano, Vani Kanjirangat, Fabio Rinaldi, Koji Fujimoto, Mizuho Nishio, Osamu Sugiyama, Kana Ichikawa, Farhad Nooralahzadeh, Aron N. Horvath, Michael Krauthammer
2021 J jnl
AttentionDDI: Siamese attention-based deep learning method for drug-drug interaction predictions.
BMC Bioinform.
Kyriakos Schwarz, Ahmed Allam, Nicolas Andres Perez Gonzalez, Michael Krauthammer
2021 — conf
Progressive Transformer-Based Generation of Radiology Reports.
EMNLP (Findings)
Farhad Nooralahzadeh, Nicolas Perez Gonzalez, Thomas Frauenfelder, Koji Fujimoto, Michael Krauthammer
2021 J jnl
Progressive Transformer-Based Generation of Radiology Reports.
CoRR
Farhad Nooralahzadeh, Nicolas Perez Gonzalez, Thomas Frauenfelder, Koji Fujimoto, Michael Krauthammer
2020 J jnl
AttentionDDI: Siamese Attention-based Deep Learning method for drug-drug interaction predictions.
CoRR
Kyriakos Schwarz, Ahmed Allam, Nicolas Andres Perez Gonzalez, Michael Krauthammer
2020 J jnl
AutoDiscern: rating the quality of online health information with hierarchical encoder attention-based neural networks.
BMC Medical Informatics Decis. Mak.
Laura Kinkead, Ahmed Allam, Michael Krauthammer
2020 C conf
Iterations for Propensity Score Matching in MonetDB.
ADBIS
Michael H. Böhlen, Oksana Dolmatova, Michael Krauthammer, Alphonse Mariyagnanaseelan, Jonathan Stahl, Timo Surbeck
2020 J jnl
Patient Similarity Analysis with Longitudinal Health Data.
CoRR
Ahmed Allam, Matthias Dittberner, Anna Sintsova, Dominique Brodbeck, Michael Krauthammer
2020 J jnl
Reducing Annotation Burden Through Multimodal Learning.
Frontiers Big Data
Kevin Lopez, Samah J. Fodeh, Ahmed Allam, Cynthia Brandt, Michael Krauthammer
2019 J jnl
AutoDiscern: Rating the Quality of Online Health Information with Hierarchical Encoder Attention-based Neural Networks.
CoRR
Laura Kinkead, Ahmed Allam, Michael Krauthammer
2018 J jnl
Neural networks versus Logistic regression for 30 days all-cause readmission prediction.
CoRR
Ahmed Allam, Mate Levente Nagy, George R. Thoma, Michael Krauthammer
2018 J jnl
Prototyping a precision oncology 3.0 rapid learning platform.
BMC Bioinform.
Connor Sweetnam, Simone Mocellin, Michael Krauthammer, Nathaniel Knopf, Robert Baertsch, Jeff Shrager
2017 — conf
A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling.
CRI
Roxanne Wadia, Mark A. Shifman, Forrest W. Levin, Luis N. Marenco, Cynthia Brandt, Kei-Hoi Cheung, Tamar H. Taddei, Michael Krauthammer
2017 J jnl
PySeqLab: an open source Python package for sequence labeling and segmentation.
Bioinform.
Ahmed Allam, Michael Krauthammer
2017 J jnl
Toward automated assessment of health Web page quality using the DISCERN instrument.
J. Am. Medical Informatics Assoc.
Ahmed Allam, Peter Johannes Schulz, Michael Krauthammer
2016 Misc conf
Controlling testing volume for respiratory viruses using machine learning and text mining.
AMIA
Mark V. Mai, Michael Krauthammer
2016 J jnl
Decentralized provenance-aware publishing with nanopublications.
PeerJ Comput. Sci.
Tobias Kuhn, Christine Chichester, Michael Krauthammer, Núria Queralt-Rosinach, Ruben Verborgh, George Giannakopoulos, Axel-Cyrille Ngonga Ngomo, Raffaele Viglianti, Michel Dumontier
2016 J jnl
Decentralized provenance-aware publishing with nanopublications.
PeerJ Prepr.
Tobias Kuhn, Christine Chichester, Michael Krauthammer, Núria Queralt-Rosinach, Ruben Verborgh, George Giannakopoulos, Axel-Cyrille Ngonga Ngomo, Raffaele Viglianti, Michel Dumontier
2016 J jnl
Global copy number profiling of cancer genomes.
Bioinform.
Xuefeng Wang, Mengjie Chen, Xiaoqing Yu, Natapol Pornputtapong, Hao Chen, Nancy Ruonan Zhang, R. Scott Powers, Michael Krauthammer
2015 — conf
BIM: an open ontology for the annotation of biomedical images.
ICBO
Ahmad C. Bukhari, Mate Levente Nagy, Michael Krauthammer, Paolo Ciccarese, Christopher J. O. Baker
2015 J jnl
Mutadelic: mutation analysis using description logic inferencing capabilities.
Bioinform.
Matthew E. Holford, Michael Krauthammer
2015 — conf
Publishing Without Publishers: A Decentralized Approach to Dissemination, Retrieval, and Archiving of Data.
ISWC (1)
Tobias Kuhn, Christine Chichester, Michael Krauthammer, Michel Dumontier
2015 — conf
iCyrus: A Semantic Framework for Biomedical Image Discovery.
SWAT4LS
Syed Ahmad Chan Bukhari, Mate Levente Nagy, Paolo Ciccarese, Michael Krauthammer, Christopher J. O. Baker
2014 J jnl
Mining Images in Biomedical Publications: Detection and Analysis of Gel Diagrams.
CoRR
Tobias Kuhn, Mate Levente Nagy, Thaibinh Luong, Michael Krauthammer
2014 J jnl
Mining images in biomedical publications: Detection and analysis of gel diagrams.
J. Biomed. Semant.
Tobias Kuhn, Mate Levente Nagy, Thaibinh Luong, Michael Krauthammer
2014 J jnl
Publishing without Publishers: a Decentralized Approach to Dissemination, Retrieval, and Archiving of Data.
CoRR
Tobias Kuhn, Christine Chichester, Michel Dumontier, Michael Krauthammer
2014 — conf
SEBI: An Architecture for Biomedical Image Discovery, Interoperability and Reusability Based on Semantic Enrichment.
SWAT4LS
Syed Ahmad Chan Bukhari, Michael Krauthammer, Christopher J. O. Baker
2013 J jnl
Broadening the Scope of Nanopublications
CoRR
Tobias Kuhn, Paolo Emilio Barbano, Mate Levente Nagy, Michael Krauthammer
2013 B conf
Broadening the Scope of Nanopublications.
ESWC
Tobias Kuhn, Paolo Emilio Barbano, Mate Levente Nagy, Michael Krauthammer
2013 J jnl
Complementary ensemble clustering of biomedical data.
J. Biomed. Informatics
Samah Jamal Fodeh, Cynthia Brandt, Thaibinh Luong, Ali Haddad, Martin H. Schultz, Terrence Murphy, Michael Krauthammer
2013 Misc conf
Nanorecords: A Novel Approach to Communicating High-Level Medical Information.
AMIA
Mark V. Mai, Tobias Kuhn, José Costa, Michael Krauthammer
2013 — conf
Next Generation Cancer Data Discovery, Access, and Integration Using Prizms and Nanopublications.
DILS
Jamie P. McCusker, Timothy Lebo, Michael Krauthammer, Deborah L. McGuinness
2012 J jnl
A semantic web framework to integrate cancer omics data with biological knowledge.
BMC Bioinform.
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
2012 — conf
Enhancing Clustering by Exploiting Complementary Data Modalities in the Medical Domain.
AIAI (1)
Samah Jamal Fodeh, Ali Haddad, Cynthia Brandt, Martin H. Schultz, Michael Krauthammer
2012 — conf
Estimating a gene's mutation burden by the number of observed synonymous base substitutions.
BIBM
Perry Evans, Michael Krauthammer
2012 Misc conf
Finding and Accessing Diagrams in Biomedical Publications.
AMIA
Tobias Kuhn, Thaibinh Luong, Michael Krauthammer
2012 J jnl
Image Mining from Gel Diagrams in Biomedical Publications
CoRR
Tobias Kuhn, Michael Krauthammer
2012 J jnl
Underspecified Scientific Claims in Nanopublications
CoRR
Tobias Kuhn, Michael Krauthammer
2012 — conf
Underspecified Scientific Claims in Nanopublications.
WoLE@ISWC
Tobias Kuhn, Michael Krauthammer
2011 J jnl
MU2A - reconciling the genome and transcriptome to determine the effects of base substitutions.
Bioinform.
Vijay Garla, Yong Kong, Sebastian Szpakowski, Michael Krauthammer
2010 J jnl
A new pivoting and iterative text detection algorithm for biomedical images.
J. Biomed. Informatics
Songhua Xu, Michael Krauthammer
2010 J jnl
Analysis Of Cancer Omics Data In A Semantic Web Framework
CoRR
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
2010 — conf
Analysis of Cancer Omics Data In A Semantic Web Framework.
SWAT4LS
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
2009 — conf
Controlled Natural Language for Clinical Practice Guidelines.
CNL (Pre-Proceedings)
Richard N. Shiffman, George Michel, Michael Krauthammer, Norbert E. Fuchs, Kaarel Kaljurand, Tobias Kuhn
2009 Misc conf
Embedding the Guideline Elements Model in Web Ontology Language.
AMIA
Nam Tran, George Michel, Michael Krauthammer, Richard N. Shiffman
2009 Misc conf
Enriching PubMed Related Article Search with Sentence Level Co-citations.
AMIA
Nam Tran, Pedro Alves, Shuangge Ma, Michael Krauthammer
2009 J jnl
Semantic web data warehousing for caGrid.
BMC Bioinform.
Jamie P. McCusker, Joshua A. Phillips, Alejandra N. González-Beltrán, Anthony Finkelstein, Michael Krauthammer
2009 J jnl
Structural similarity assessment for drug sensitivity prediction in cancer.
BMC Bioinform.
Pavithra Shivakumar, Michael Krauthammer
2009 — conf
Writing Clinical Practice Guidelines in Controlled Natural Language.
CNL
Richard N. Shiffman, George Michel, Michael Krauthammer, Norbert E. Fuchs, Kaarel Kaljurand, Tobias Kuhn
2008 — conf
Term Mapping Using Matrix Operations.
Ontologies and Text Mining for Life Sciences
Michael Krauthammer, Thaibinh Luong
2008 J jnl
Yale Image Finder (YIF): a new search engine for retrieving biomedical images.
Bioinform.
Songhua Xu, Jamie P. McCusker, Michael Krauthammer
2007 J jnl
Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics.
Bioinform.
Andrew K. Smith, Kei-Hoi Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein
2006 J jnl
A semantic web approach to biological pathway data reasoning and integration.
J. Web Semant.
Kei-Hoi Cheung, Peishen Qi, David Tuck, Michael Krauthammer
2006 Misc conf
Shallow Semantic Parsing of Randomized Controlled Trial Reports.
AMIA
Hyung M. Paek, Yacov Kogan, Prem Thomas, Seymour Codish, Michael Krauthammer
2005 Misc conf
Towards Semantic Role Labeling & IE in the Medical Literature.
AMIA
Yacov Kogan, Nigel Collier, Serguei V. S. Pakhomov, Michael Krauthammer
2004 J jnl
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data.
J. Biomed. Informatics
Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur
2004 J jnl
Probabilistic inference of molecular networks from noisy data sources.
Bioinform.
Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky
2004 J jnl
Term identification in the biomedical literature.
J. Biomed. Informatics
Michael Krauthammer, Goran Nenadic
2003 Misc conf
A Native XML Database Design for Clinical Document Research.
AMIA
Stephen B. Johnson, David A. Campbell, Michael Krauthammer, P. Karina Tulipano, Eneida A. Mendonça, Carol Friedman, George Hripcsak
2002 A conf
Of truth and pathways: chasing bits of information through myriads of articles.
ISMB
Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky
2002 Misc conf
Representing nested semantic information in a linear string of text using XML.
AMIA
Michael Krauthammer, Stephen B. Johnson, George Hripcsak, David A. Campbell, Carol Friedman
2001 Misc conf
A knowledge model for the interpretation and visualization of NLP-parsed discharged summaries.
AMIA
Michael Krauthammer, George Hripcsak
2001 — conf
GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.
ISMB (Supplement of Bioinformatics)
Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky
2001 — conf
GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways.
German Conference on Bioinformatics
Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman
2001 Misc conf
Linking Protein Interaction Data to the MESH Hierarchy.
AMIA
Michael Krauthammer, Pauline Kra, Carol Friedman
2000 J jnl
A knowledge model for analysis and simulation of regulatory networks.
Bioinform.
Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer, Sabina H. Kaplan, Pauline Kra, James J. Russo, Carol Friedman
2000 Misc conf
Designing a Navigational Ontology for Browsing and Accessing 3D Anatomical Images.
AMIA
Nina Wacholder, Judith M. Venuti, Michael Krauthammer, Pat Molholt
2000 Misc conf
Knowledge Sharing in the Construction of an Anatomical Navigational Ontology.
AMIA
Michael Krauthammer, Nina Wacholder, Stephen B. Johnson, Gai Elhanan, Pat Molholt
2000 Misc conf
Using BLAST, A DNA and Protein Sequence Comparison Tool, for Finding Gene and Protein Names in Journal Articles.
AMIA
Michael Krauthammer, Andrey Rzhetsky, Pavel Morozov, Carol Friedman