Michael J. Holst

38 papers Misc 1Journal 33

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	Symmetry Breaking and the Generation of Spin Ordered Magnetic States in Density Functional Theory Due to Dirac Exchange for a Hydrogen Molecule. J. Nonlinear Sci. Michael J. Holst, Houdong Hu, Jianfeng Lu, Jeremy Louis Marzuola, Duo Song, Jonathan Weare
2021	J	`jnl`	A Note On Determining Projections for Non-Homogeneous Incompressible Fluids. CoRR Benjamin Faktor, Michael J. Holst
2020	J	`jnl`	3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries. PLoS Comput. Biol. Christopher T. Lee, Justin G. Laughlin, Nils Angliviel de La Beaumelle, Rommie E. Amaro, James Andrew McCammon, Ravi Ramamoorthi, Michael J. Holst, Padmini Rangamani
2020	J	`jnl`	Local Finite Element Approximation of Sobolev Differential Forms. CoRR Evan S. Gawlik, Michael J. Holst, Martin W. Licht
2020	J	`jnl`	Local sensitivity analysis of the 'Membrane shape equation' derived from the Helfrich energy. CoRR Padmini Rangamani, Ali Behzadan, Michael J. Holst
2019	J	`jnl`	The Implementation of the Colored Abstract Simplicial Complex and Its Application to Mesh Generation. ACM Trans. Math. Softw. Christopher T. Lee, John B. Moody, Rommie E. Amaro, James Andrew McCammon, Michael J. Holst
2018	J	`jnl`	The Implementation of the Colored Abstract Simplicial Complex and its Application to Mesh Generation. CoRR Christopher T. Lee, John B. Moody, Rommie E. Amaro, James Andrew McCammon, Michael J. Holst
2015	J	`jnl`	Convergence of goal-oriented adaptive finite element methods for semilinear problems. Comput. Vis. Sci. Michael J. Holst, Sara N. Pollock, Yunrong Zhu
2014	J	`jnl`	Multilevel preconditioners for discontinuous, Galerkin approximations of elliptic problems, with jump coefficients. Math. Comput. Blanca Ayuso de Dios, Michael J. Holst, Yunrong Zhu, Ludmil T. Zikatanov
2013	—	`ch.`	Adaptive Finite Element Methods with Inexact Solvers for the Nonlinear Poisson-Boltzmann Equation. Domain Decomposition Methods in Science and Engineering XX Michael J. Holst, Ryan Szypowski, Yunrong Zhu
2013	—	`book`	Domain Decomposition Methods in Science and Engineering XX Randolph E. Bank, Michael J. Holst, Olof B. Widlund, Jinchao Xu
2013	J	`jnl`	Feature-preserving surface mesh smoothing via suboptimal Delaunay triangulation. Graph. Model. Zhanheng Gao, Zeyun Yu, Michael J. Holst
2013	—	`ch.`	Multigrid Preconditioner for Nonconforming Discretization of Elliptic Problems with Jump Coefficients. Domain Decomposition Methods in Science and Engineering XX Blanca Ayuso de Dios, Michael J. Holst, Yunrong Zhu, Ludmil T. Zikatanov
2012	J	`jnl`	Geometric Variational Crimes: Hilbert Complexes, Finite Element Exterior Calculus, and Problems on Hypersurfaces. Found. Comput. Math. Michael J. Holst, Ari Stern
2012	J	`jnl`	Goal-Oriented Adaptivity and Multilevel Preconditioning for the Poisson-Boltzmann Equation. J. Sci. Comput. Burak Aksoylu, Stephen D. Bond, Eric C. Cyr, Michael J. Holst
2012	J	`jnl`	Local multilevel preconditioners for elliptic equations with jump coefficients on bisection grids. Comput. Vis. Sci. Long Chen, Michael J. Holst, Jinchao Xu, Yunrong Zhu
2012	J	`jnl`	Quality tetrahedral mesh smoothing via boundary-optimized Delaunay triangulation. Comput. Aided Geom. Des. Zhanheng Gao, Zeyun Yu, Michael J. Holst
2012	J	`jnl`	Semilinear Mixed Problems on Hilbert Complexes and Their Numerical Approximation. Found. Comput. Math. Michael J. Holst, Ari Stern
2011	J	`jnl`	Multiscale Modeling of Calcium Dynamics in Ventricular Myocytes With Realistic Transverse Tubules. IEEE Trans. Biomed. Eng. Zeyun Yu, Guangming Yao, Masahiko Hoshijima, Anushka Michailova, Michael J. Holst
2010	J	`jnl`	Analysis of a General Family of Regularized Navier-Stokes and MHD Models. J. Nonlinear Sci. Michael J. Holst, Evelyn Lunasin, Tsogtgerel Gantumur
2010	J	`jnl`	Numerical Analysis of Ca PLoS Comput. Biol. Yuhui Cheng, Zeyun Yu, Masahiko Hoshijima, Michael J. Holst, Andrew D. McCulloch, James Andrew McCammon, Anushka Michailova
2010	J	`jnl`	Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes I: Finite element solutions. J. Comput. Phys. Benzhuo Lu, Michael J. Holst, James Andrew McCammon, Yongcheng Zhou
2009	J	`jnl`	Convergence and optimality of adaptive mixed finite element methods. Math. Comput. Long Chen, Michael J. Holst, Jinchao Xu
2009	Misc	`conf`	Finite Element Analysis of Drug Electrostatic Diffusion: Inhibition Rate Studies in N1 Neuraminidase. Pacific Symposium on Biocomputing Yuhui Cheng, Michael J. Holst, James Andrew McCammon
2007	J	`jnl`	The Finite Element Approximation of the Nonlinear Poisson-Boltzmann Equation. SIAM J. Numer. Anal. Long Chen, Michael J. Holst, Jinchao Xu
2006	J	`jnl`	Optimality of Multilevel Preconditioners for Local Mesh Refinement in Three Dimensions. SIAM J. Numer. Anal. Burak Aksoylu, Michael J. Holst
2005	J	`jnl`	Generalized Green's Functions and the Effective Domain of Influence. SIAM J. Sci. Comput. Donald J. Estep, Michael J. Holst, Mats G. Larson
2003	J	`jnl`	A New Paradigm for Parallel Adaptive Meshing Algorithms. SIAM Rev. Randolph E. Bank, Michael J. Holst
2003	J	`jnl`	An Odyssey into Local Refinement and Multilevel Preconditioning III: Implementation and Numerical Experiments. SIAM J. Sci. Comput. Burak Aksoylu, Stephen D. Bond, Michael J. Holst
2001	J	`jnl`	Adaptive Numerical Treatment of Elliptic Systems on Manifolds. Adv. Comput. Math. Michael J. Holst
2001	J	`jnl`	ErratumAdaptive multilevel finite element solution of the Poisson-Boltzmann equation I. Algorithms and examples. J. Comput. Chem. Michael J. Holst, Nathan A. Baker, Feng Wang
2001	J	`jnl`	The adaptive multilevel finite element solution of the Poisson-Boltzmann equation on massively parallel computers. IBM J. Res. Dev. Nathan A. Baker, David Sept, Michael J. Holst, James Andrew McCammon
2000	J	`jnl`	A New Paradigm for Parallel Adaptive Meshing Algorithms. SIAM J. Sci. Comput. Randolph E. Bank, Michael J. Holst
2000	J	`jnl`	Adaptive multilevel finite element solution of the Poisson-Boltzmann equation I. Algorithms and examples. J. Comput. Chem. Michael J. Holst, Nathan A. Baker, Feng Wang
2000	J	`jnl`	Adaptive multilevel finite element solution of the Poisson-Boltzmann equation II. Refinement at solvent-accessible surfaces in biomolecular systems. J. Comput. Chem. Michael J. Holst, Nathan A. Baker, Feng Wang
1995	J	`jnl`	Numerical Solution of t he Nonlinear Poisson-Blotzmann Equation: Developing More Robust and Efficient Methods. J. Comput. Chem. Michael J. Holst, Faisal Saied
1993	J	`jnl`	Multigrid solution of the Poisson - Boltzmann equation. J. Comput. Chem. Michael J. Holst, Faisal Saied
1993	—	`—`	Multilevel Methods for the Poisson-Boltzmann Equation Michael J. Holst