Michael I. Love

19 papers Journal 19
YearRankTypeTitle / Venue / Authors
2024 J jnl
Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies.
CoRR
Yu-Ning Huang, Michael I. Love, Cynthia Flaire Ronkowski, Dhrithi Deshpande, Lynn M. Schriml, Annie Wong-Beringer, Barend Mons, Russell Corbett-Detig, Christopher I. Hunter, Jason H. Moore, Lana X. Garmire, T. B. K. Reddy, Winston A. Hide, Atul J. Butte, Mark D. Robinson, Serghei Mangul
2023 J jnl
Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data.
Briefings Bioinform.
Hunyong Cho, Yixiang Qu, Chuwen Liu, Boyang Tang, Ruiqi Lyu, Bridget M. Lin, Jeffrey Roach, M. Andrea Azcarate-Peril, Apoena Aguiar Ribeiro, Michael I. Love, Kimon Divaris, Di Wu
2023 J jnl
Finding Groups of Cross-Correlated Features in Bi-View Data.
J. Mach. Learn. Res.
Miheer Dewaskar, John Palowitch, Mark He, Michael I. Love, Andrew B. Nobel
2023 J jnl
bootRanges: flexible generation of null sets of genomic ranges for hypothesis testing.
Bioinform.
Wancen Mu, Eric S. Davis, Stuart Lee, Mikhail G. Dozmorov, Douglas H. Phanstiel, Michael I. Love
2023 J jnl
excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies.
Bioinform.
Jonathan D. Ogata, Wancen Mu, Eric S. Davis, Bingjie Xue, J. Chuck Harrell, Nathan C. Sheffield, Douglas H. Phanstiel, Michael I. Love, Mikhail G. Dozmorov
2023 J jnl
matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling.
Bioinform.
Eric S. Davis, Wancen Mu, Stuart Lee, Mikhail G. Dozmorov, Michael I. Love, Douglas H. Phanstiel
2022 J jnl
Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets.
Bioinform.
Wancen Mu, Hirak Sarkar, Avi Srivastava, Kwangbom Choi, Rob Patro, Michael I. Love
2022 J jnl
Plotgardener: cultivating precise multi-panel figures in R.
Bioinform.
Nicole E. Kramer, Eric S. Davis, Craig Wenger, Erika Deoudes, Sarah M. Parker, Michael I. Love, Douglas H. Phanstiel
2021 J jnl
An approach for normalization and quality control for NanoString RNA expression data.
Briefings Bioinform.
Arjun Bhattacharya, Alina M. Hamilton, Helena Furberg, Eugene Pietzak, Mark P. Purdue, Melissa A. Troester, Katherine A. Hoadley, Michael I. Love
2021 J jnl
Compression of quantification uncertainty for scRNA-seq counts.
Bioinform.
Scott Van Buren, Hirak Sarkar, Avi Srivastava, Naim U. Rashid, Rob Patro, Michael I. Love
2020 J jnl
Consistency and overfitting of multi-omics methods on experimental data.
Briefings Bioinform.
Sean D. McCabe, Dan-Yu Lin, Michael I. Love
2020 J jnl
Finding Stable Groups of Cross-Correlated Features in Multi-View data.
CoRR
Miheer Dewaskar, John Palowitch, Mark He, Michael I. Love, Andrew B. Nobel
2020 J jnl
Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data.
Bioinform.
Hirak Sarkar, Avi Srivastava, Héctor Corrada Bravo, Michael I. Love, Rob Patro
2020 J jnl
Tximeta: Reference sequence checksums for provenance identification in RNA-seq.
PLoS Comput. Biol.
Michael I. Love, Charlotte Soneson, Peter F. Hickey, Lisa K. Johnson, N. Tessa Pierce, Lori A. Shepherd, Martin Morgan, Rob Patro
2019 J jnl
Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences.
Bioinform.
Anqi Zhu, Joseph G. Ibrahim, Michael I. Love
2019 J jnl
SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering for single-cell RNA-seq data.
Bioinform.
Yuchen Yang, Ruth Huh, Houston W. Culpepper, Yuan Lin, Michael I. Love, Yun Li
2018 J jnl
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification.
F1000Research
Michael I. Love, Charlotte Soneson, Rob Patro
2018 J jnl
coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers.
PLoS Comput. Biol.
Alena van Bömmel, Michael I. Love, Ho-Ryun Chung, Martin Vingron
2012 J jnl
Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.
Bioinform.
Ruping Sun, Michael I. Love, Tomasz Zemojtel, Anne-Katrin Emde, Ho-Ryun Chung, Martin Vingron, Stefan A. Haas