Michael Gribskov

51 papers A 2Misc 1Journal 38Unranked 5
YearRankTypeTitle / Venue / Authors
2022 J jnl
Bibliometric review of ATAC-Seq and its application in gene expression.
Briefings Bioinform.
Liheng Luo, Michael Gribskov, Sufang Wang
2020 J jnl
Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq.
PLoS Comput. Biol.
Xiangying Sun, Zhezhen Wang, Johnathon M. Hall, Carlos Perez-Cervantes, Alexander J. Ruthenburg, Ivan P. Moskowitz, Michael Gribskov, Xinan Holly Yang
2019 — book
Encyclopedia of Bioinformatics and Computational Biology - Volume 1
Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach
2019 — book
Encyclopedia of Bioinformatics and Computational Biology - Volume 2
Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach
2019 — book
Encyclopedia of Bioinformatics and Computational Biology - Volume 3
Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach
2019 J jnl
IRESpy: an XGBoost model for prediction of internal ribosome entry sites.
BMC Bioinform.
Junhui Wang, Michael Gribskov
2019 — ch.
Identification of Sequence Patterns, Motifs and Domains.
Encyclopedia of Bioinformatics and Computational Biology (3)
Michael Gribskov
2019 J jnl
MiPepid: MicroPeptide identification tool using machine learning.
BMC Bioinform.
Mengmeng Zhu, Michael Gribskov
2019 — ch.
MicroRNA and lncRNA Databases and Analysis.
Encyclopedia of Bioinformatics and Computational Biology (2)
Xiangying Sun, Michael Gribskov
2018 J jnl
AUDIT: approving and tracking updates with dependencies in collaborative databases.
Distributed Parallel Databases
Khaleel Mershad, Qutaibah M. Malluhi, Mourad Ouzzani, Mingjie Tang, Michael Gribskov, Walid G. Aref
2018 J jnl
COACT: a query interface language for collaborative databases.
Distributed Parallel Databases
Khaleel Mershad, Qutaibah M. Malluhi, Mourad Ouzzani, Mingjie Tang, Michael Gribskov, Walid G. Aref, Deo Prakash
2017 — conf
Advancing the Representation of Women in HPC at Purdue University.
PEARC
Gladys K. Andino, Marisa Brazil, Michael Gribskov, Preston M. Smith
2017 J jnl
AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs.
Bioinform.
Biaobin Jiang, Kyle Kloster, David F. Gleich, Michael Gribskov
2017 J jnl
Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis.
Bioinform.
Sufang Wang, Michael Gribskov
2017 J jnl
DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates.
Bioinform.
Hao Peng, Yifan Yang, Shandian Zhe, Jian Wang, Michael Gribskov, Yuan Qi
2016 J jnl
AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs.
CoRR
Biaobin Jiang, Kyle Kloster, David F. Gleich, Michael Gribskov
2016 J jnl
CellMiner Companion: an interactive web application to explore CellMiner NCI-60 data.
Bioinform.
Sufang Wang, Michael Gribskov, Tony R. Hazbun, Pete E. Pascuzzi
2015 — conf
Differential flux balance analysis of quantitative proteomic data on protein interaction networks.
GlobalSIP
Biaobin Jiang, David F. Gleich, Michael Gribskov
2015 — conf
Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera).
BIBM
Gladys K. Andino, Michael Gribskov, Greg J. Hunt, Denis Anderson, Jay D. Evans
2015 J jnl
GenoBase: comprehensive resource database of
Nucleic Acids Res.
Yuta Otsuka, Ai Muto, Rikiya Takeuchi, Chihiro Okada, Motokazu Ishikawa, Koichiro Nakamura, Natsuko Yamamoto, Hitomi Dose, Kenji Nakahigashi, Shigeki Tanishima, Sivasundaram Suharnan, Wataru Nomura, Toru Nakayashiki, Walid G. Aref, Barry R. Bochner, Tyrrell Conway, Michael Gribskov, Daisuke Kihara, Kenneth E. Rudd, Yukako Tohsato, Barry L. Wanner, Hirotada Mori
2015 — conf
MMC-margin: Identification of maximum frequent subgraphs by metropolis Monte Carlo sampling.
IEEE BigData
Muyi Liu, Michael Gribskov
2008 J jnl
Bioinformatics research in the Asia Pacific: a 2007 update.
BMC Bioinform.
Shoba Ranganathan, Michael Gribskov, Tin Wee Tan
2008 — conf
Pattern Matching in RNA Structures.
ISBRA
Kejie Li, Reazur Rahman, Aditi Gupta, Prasad Siddavatam, Michael Gribskov
2006 J jnl
Establishing bioinformatics research in the Asia Pacific.
BMC Bioinform.
Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan
2006 J jnl
Wiggle - Predicting Functionally Flexible Regions from Primary Sequence.
PLoS Comput. Biol.
Jenny Gu, Michael Gribskov, Philip E. Bourne
2005 J jnl
An Open Forum for Computational Biology.
PLoS Comput. Biol.
Michael Gribskov
2005 J jnl
The ISCB: Growing and Evolving in Step with Science.
PLoS Comput. Biol.
Michael Gribskov
2004 Misc conf
A Database Designed to Computationally Aid an Experimental Approach to Alternative Splicing.
Pacific Symposium on Biocomputing
Christina L. Zheng, T. Murlidharan Nair, Michael Gribskov, Y. S. Kwon, Hai-Ri Li, Xiang-Dong Fu
2003 J jnl
2HAPI: A Microarray Data Analysis System.
Bioinform.
J. Lynn Fink, Scott Drewes, Hiren Patel, John B. Welsh, Daniel R. Masys, Jacques Corbeil, Michael Gribskov
2003 J jnl
Challenges in Data Management for Functional Genomics.
OMICS
Michael Gribskov
2003 J jnl
Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores.
J. Comput. Biol.
Timothy L. Bailey, Michael Gribskov
2003 J jnl
Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression data.
Comput. Biol. Chem.
T. Murlidharan Nair, Christina L. Zheng, J. Lynn Fink, Robert O. Stuart, Michael Gribskov
2003 J jnl
The PlantsP and PlantsT Functional Genomics Databases.
Nucleic Acids Res.
Jason H. Tchieu, Fariba Fana, J. Lynn Fink, Jeffrey Harper, T. Murlidharan Nair, R. Hannes Niedner, Douglas W. Smith, Kenneth Steube, Tobey M. Tam, Stella Veretnik, Degeng Wang, Michael Gribskov
2003 J jnl
a program for automatic generation of database interfaces .
Comput. Biol. Chem.
Christina L. Zheng, Fariba Fana, Poornaprajna V. Udupi, Michael Gribskov
2002 J jnl
Homophila: human disease gene cognates in Drosophila.
Nucleic Acids Res.
Samson Chien, Lawrence T. Reiter, Ethan Bier, Michael Gribskov
2001 J jnl
PlantsP: a functional genomics database for plant phosphorylation.
Nucleic Acids Res.
Michael Gribskov, Fariba Fana, Jeffrey Harper, Debra A. Hope, Alice C. Harmon, Douglas W. Smith, Frans E. Tax, Guangfa Zhang
2001 J jnl
Use of keyword hierarchies to interpret gene expression patterns.
Bioinform.
Daniel R. Masys, John B. Welsh, J. Lynn Fink, Michael Gribskov, Igor Klacansky, Jacques Corbeil
2000 J jnl
Concerning the accuracy of MAST E-values.
Bioinform.
Timothy L. Bailey, Michael Gribskov
2000 J jnl
ISMB-2000: Bioinformatics enters a new millennium.
Bioinform.
Philip E. Bourne, Michael Gribskov
2000 A ed.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA
ISMB
Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig
1999 J jnl
The new biological literature.
Bioinform.
Michael Gribskov
1998 J jnl
Combining evidence using p-values: application to sequence homology searches.
Bioinform.
Timothy L. Bailey, Michael Gribskov
1998 J jnl
Methods and Statistics for Combining Motif Match Scores.
J. Comput. Biol.
Timothy L. Bailey, Michael Gribskov
1997 J jnl
Score Distributions for Simultaneous Matching to Multiple Motifs.
J. Comput. Biol.
Timothy L. Bailey, Michael Gribskov
1996 A conf
The Megaprior Heuristic for Discovering Protein Sequence Patterns.
ISMB
Timothy L. Bailey, Michael Gribskov
1996 J jnl
Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching.
Comput. Chem.
Michael Gribskov, Nina L. Robinson
1993 J jnl
A Mechanistic View of Proteins and Their Sequences.
Comput. Chem.
Michael Gribskov
1992 J jnl
The Language Metaphor in Sequence Analysis.
Comput. Chem.
Michael Gribskov
1988 J jnl
Profile scanning for three-dimensional structural patterns in protein sequences.
Comput. Appl. Biosci.
Michael Gribskov, M. Homyak, J. Edenfield, David S. Eisenberg
1986 J jnl
PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package.
Nucleic Acids Res.
Michael Gribskov, Richard R. Burgess, J. Devereux
1984 J jnl
The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression.
Nucleic Acids Res.
Michael Gribskov, J. Devereux, Richard R. Burgess