Michael E. Wall

17 papers C 1Misc 1Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Combining Reactive Quantum-Mechanical Molecular-Dynamics Simulations with Mutagenesis, Crystallography, and Enzyme Kinetics to Reveal Plausible Steps of Isocyanide Hydratase Catalysis.
J. Chem. Inf. Model.
Rae A. Corrigan Grove, Michael A. Moxley, Christian F. A. Negre, Marc J. Cawkwell, Anders M. N. Niklasson, Susan M. Mniszewski, Nathan Smith, Kevin Prososki, Mark A. Wilson, Michael E. Wall
2025 J jnl
GPU-Accelerated Charge-Equilibration for Shadow Molecular Dynamics in Python.
CoRR
Mehmet Cagri Kaymak, Nicholas Lubbers, Christian F. A. Negre, Michael E. Wall, Anders M. N. Niklasson
2024 J jnl
Accelerating x-ray tracing for exascale systems using Kokkos.
Concurr. Comput. Pract. Exp.
Felix Wittwer, Nicholas K. Sauter, Derek Mendez, Billy K. Poon, Aaron S. Brewster, James M. Holton, Michael E. Wall, William E. Hart, Deborah Bard, Johannes P. Blaschke
2024 J jnl
Co-design for Particle Applications at Exascale.
Comput. Sci. Eng.
Samuel Temple Reeve, Jean-Luc Fattebert, Stephen Dewitt, Pablo Seleson, David Joy, Stuart R. Slattery, Aaron Scheinberg, Rene Halver, Christoph Junghans, Christian F. A. Negre, Michael E. Wall, Yu Zhang, Anders M. N. Niklasson, James F. Belak, Susan M. Mniszewski, Danny Perez
2022 J jnl
Accelerating X-Ray Tracing for Exascale Systems using Kokkos.
CoRR
Felix Wittwer, Nicholas K. Sauter, Derek Mendez, Billy K. Poon, Aaron S. Brewster, James M. Holton, Michael E. Wall, William E. Hart, Deborah Bard, Johannes P. Blaschke
2021 J jnl
Enabling particle applications for exascale computing platforms.
CoRR
Susan M. Mniszewski, James F. Belak, Jean-Luc Fattebert, Christian F. A. Negre, Stuart R. Slattery, Adetokunbo Adedoyin, Robert F. Bird, Choong-Seock Chang, Guangye Chen, Stéphane Ethier, Shane Fogerty, Salman Habib, Christoph Junghans, Damien Lebrun-Grandié, Jamaludin Mohd-Yusof, Stan G. Moore, Daniel Osei-Kuffuor, Steven J. Plimpton, Adrian Pope, Samuel Temple Reeve, Lee F. Ricketson, Aaron Scheinberg, Amil Y. Sharma, Michael E. Wall
2021 J jnl
Enabling particle applications for exascale computing platforms.
Int. J. High Perform. Comput. Appl.
Susan M. Mniszewski, James F. Belak, Jean-Luc Fattebert, Christian F. A. Negre, Stuart R. Slattery, Adetokunbo A. Adedoyin, Robert F. Bird, Choong-Seock Chang, Guangye Chen, Stéphane Ethier, Shane Fogerty, Salman Habib, Christoph Junghans, Damien Lebrun-Grandié, Jamaludin Mohd-Yusof, Stan G. Moore, Daniel Osei-Kuffuor, Steven J. Plimpton, Adrian Pope, Samuel Temple Reeve, Lee F. Ricketson, Aaron Scheinberg, Amil Y. Sharma, Michael E. Wall
2021 J jnl
Performance Optimizations of Recursive Electronic Structure Solvers targeting Multi-Core Architectures (LA-UR-20-26665).
CoRR
Adetokunbo Adedoyin, Christian F. A. Negre, Jamaludin Mohd-Yusof, Nicolas Bock, Daniel Osei-Kuffuor, Jean-Luc Fattebert, Michael E. Wall, Anders M. N. Niklasson, Susan M. Mniszewski
2019 J jnl
Scaling molecular dynamics beyond 100, 000 processor cores for large-scale biophysical simulations.
J. Comput. Chem.
Jaewoon Jung, Wataru Nishima, Marcus Daniels, Gavin Bascom, Chigusa Kobayashi, Adetokunbo Adedoyin, Michael E. Wall, Anna Lappala, Dominic Phillips, William Fischer, Chang-Shung Tung, Tamar Schlick, Yuji Sugita, Karissa Y. Sanbonmatsu
2013 Misc conf
Detection of Protein Catalytic Sites in the Biomedical Literature.
Pacific Symposium on Biocomputing
Karin Verspoor, Andrew MacKinlay, Judith D. Cohn, Michael E. Wall
2012 J jnl
Literature mining of protein-residue associations with graph rules learned through distant supervision.
J. Biomed. Semant.
K. E. Ravikumar, Haibin Liu, Judith D. Cohn, Michael E. Wall, Karin Verspoor
2011 J jnl
Genome Majority Vote Improves Gene Predictions.
PLoS Comput. Biol.
Michael E. Wall, Sindhu Raghavan, Judith D. Cohn, John Dunbar
2011 — conf
Pattern Learning through Distant Supervision for Extraction of Protein-Residue Associations in the Biomedical Literature.
ICMLA (2)
K. E. Ravikumar, Haibin Liu, Judith D. Cohn, Michael E. Wall, Karin Verspoor
2009 J jnl
Model of Transcriptional Activation by MarA in
PLoS Comput. Biol.
Michael E. Wall, David A. Markowitz, Judah L. Rosner, Robert G. Martin
2007 J jnl
Domain motions of Argonaute, the catalytic engine of RNA interference.
BMC Bioinform.
Dengming Ming, Michael E. Wall, Kevin Y. Sanbonmatsu
2005 C conf
Robustness in gene circuits: clustering of functional responses.
ACC
Mary J. Dunlop, Michael E. Wall
2001 J jnl
SVDMAN-singular value decomposition analysis of microarray data.
Bioinform.
Michael E. Wall, Patricia A. Dyck, Thomas S. Brettin