Michael C. Ryan

11 papers Misc 1Journal 10
YearRankTypeTitle / Venue / Authors
2019 J jnl
Interactive Clustered Heat Map Builder: An easy web-based tool for creating sophisticated clustered heat maps.
F1000Research
Michael C. Ryan, Mark Stucky, Chris Wakefield, James M. Melott, Rehan Akbani, John N. Weinstein, Bradley M. Broom
2016 J jnl
TCGASpliceSeq a compendium of alternative mRNA splicing in cancer.
Nucleic Acids Res.
Michael C. Ryan, Wing Chung Wong, Robert Brown, Rehan Akbani, Xiaoping Su, Bradley M. Broom, James M. Melott, John N. Weinstein
2014 Misc conf
Development and Evaluation of Reference Standards for Image-based Telemedicine Diagnosis and Clinical Research Studies in Ophthalmology.
AMIA
Michael C. Ryan, Susan Ostmo, Karyn Jonas, Audina Berrocal, Kimberly Drenser, Jason Horowitz, Thomas C. Lee, Charles Simmons, Maria-Ana Martinez-Castellanos, R. V. P. Chan, Michael F. Chiang
2013 J jnl
CRAVAT: cancer-related analysis of variants toolkit.
Bioinform.
Christopher Douville, Hannah Carter, Rick Kim, Noushin Niknafs, Mark Diekhans, Peter D. Stenson, David N. Cooper, Michael C. Ryan, Rachel Karchin
2012 J jnl
SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts.
Bioinform.
Michael C. Ryan, James A. Cleland, Ryangguk Kim, Wing Chung Wong, John N. Weinstein
2011 J jnl
CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer.
Bioinform.
Wing Chung Wong, Dewey Kim, Hannah Carter, Mark Diekhans, Michael C. Ryan, Rachel Karchin
2010 J jnl
Ontogenomic study of the relationship between number of gene splice variants and GO categorization.
Bioinform.
Ari B. Kahn, Barry Zeeberg, Michael C. Ryan, D. Curtis Jamison, David M. Rockoff, Yves Pommier, John N. Weinstein
2009 J jnl
LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures.
Bioinform.
Michael C. Ryan, Mark Diekhans, Stephanie Lien, Yun Liu, Rachel Karchin
2008 J jnl
SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies.
BMC Bioinform.
Michael C. Ryan, Barry Zeeberg, Natasha J. Caplen, James A. Cleland, Ari B. Kahn, Hongfang Liu, John N. Weinstein
2007 J jnl
AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
Bioinform.
Hongfang Liu, Barry Zeeberg, Gang Qu, Akif Günes Koru, Alessandro Ferrucci, Ari B. Kahn, Michael C. Ryan, Antej Nuhanovic, Peter J. Munson, William C. Reinhold, David W. Kane, John N. Weinstein
2007 J jnl
SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis.
BMC Bioinform.
Ari B. Kahn, Michael C. Ryan, Hongfang Liu, Barry Zeeberg, D. Curtis Jamison, John N. Weinstein