Mercè Llabrés

39 papers Journal 30Unranked 9

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Metadag: a web tool to generate and analyse metabolic networks. BMC Bioinform. Pere Palmer-Rodríguez, Ricardo Alberich, Mariana Reyes-Prieto, José A. Castro, Mercè Llabrés
2023	—	`conf`	Analysing the Expressiveness of Metabolic Networks Representations. WIVACE Irene García, Bessem Chouaia, Mercè Llabrés, Pere Palmer-Rodríguez, Marta Simeoni
2021	J	`jnl`	The Generalized Robinson-Foulds Distance for Phylogenetic Trees. J. Comput. Biol. Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2021	J	`jnl`	VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families. Bioinform. Joan Carles Pons, David Páez-Espino, Gabriel Riera, Natalia Ivanova, Nikos Kyrpides, Mercè Llabrés
2020	—	`conf`	A Generalized Robinson-Foulds Distance for Clonal Trees, Mutation Trees, and Phylogenetic Trees and Networks. BCB Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2020	J	`jnl`	AligNet: alignment of protein-protein interaction networks. BMC Bioinform. Adrià Alcalà, Ricardo Alberich, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2020	J	`jnl`	Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks. BMC Bioinform. Mercè Llabrés, Gabriel Riera, Francesc Rosselló, Gabriel Valiente
2020	J	`jnl`	An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms. Database J. Biol. Databases Curation Mariana Reyes-Prieto, Carlos Vargas-Chávez, Mercè Llabrés, Pere Palmer, Amparo Latorre, Andrés Moya
2019	J	`jnl`	IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes. Nucleic Acids Res. David Páez-Espino, Simon Roux, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Marcel Huntemann, T. B. K. Reddy, Joan Carles Pons, Mercè Llabrés, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides
2014	J	`jnl`	MP-Align: alignment of metabolic pathways. BMC Syst. Biol. Ricardo Alberich, Mercè Llabrés, David Sánchez, Marta Simeoni, Marc Tuduri
2014	J	`jnl`	Tree-Child Cluster Networks. Fundam. Informaticae Adrià Alcalà, Mercè Llabrés, Francesc Rosselló, Pau Rullan
2011	J	`jnl`	Comparison of Galled Trees. IEEE ACM Trans. Comput. Biol. Bioinform. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2010	J	`jnl`	Path lengths in tree-child time consistent hybridization networks. Inf. Sci. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2010	—	`conf`	Two Results on Distances for Phylogenetic Networks. IWPACBB Gabriel Cardona, Mercè Llabrés, Francesc Rosselló
2009	J	`jnl`	Comparison of Galled Trees CoRR Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric. IEEE ACM Trans. Comput. Biol. Bioinform. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics. IEEE ACM Trans. Comput. Biol. Bioinform. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	On Nakhleh's Metric for Reduced Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	The comparison of tree-sibling time consistent phylogenetic networks is graph isomorphism-complete CoRR Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2008	J	`jnl`	A Distance Metric for Tree-Sibling Time Consistent Phylogenetic Networks CoRR Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2008	J	`jnl`	A distance metric for a class of tree-sibling phylogenetic networks. Bioinform. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2008	J	`jnl`	Nodal distances for rooted phylogenetic trees. CoRR Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2008	J	`jnl`	Path lengths in tree-child time consistent hybridization networks CoRR Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2005	J	`jnl`	A family of metrics for biopolymers based on counting independent sets. Comput. Biol. Chem. Jairo Rocha, Mercè Llabrés, Ricardo Alberich
2005	J	`jnl`	On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa CoRR Mercè Llabrés, Jairo Rocha, Francesc Rosselló, Gabriel Valiente
2005	J	`jnl`	The uniqueness condition for the double pushout transformation of algebras. Inf. Sci. Mercè Llabrés, Francesc Rosselló
2004	J	`jnl`	A new family of metrics for biopolymer contact structures. Comput. Biol. Chem. Mercè Llabrés, Francesc Rosselló
2004	—	`conf`	On Supertrees of Phylogenetic Trees. Spanish Bioinformatics Conference Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2004	—	`conf`	Ordering BAC Clones from Fingerprint Data obtained through Four Enzymes Digestion and Fluorescent Labeling. Spanish Bioinformatics Conference Giulio Marcon, Nicola Cannata, Mercè Llabrés, Marta Simeoni, Giorgio Valle
2004	J	`jnl`	Single-Pushout Transformation Of Total Algebras. Int. J. Found. Comput. Sci. Ricardo Alberich, Mercè Llabrés, Francesc Rosselló
2003	J	`jnl`	A family of metrics on contact structures based on edge ideals CoRR Mercè Llabrés, Francesc Rosselló
2003	J	`jnl`	Modelling Biochemical Operations on RNA Secondary Structures CoRR Mercè Llabrés, Francesc Rosselló
2002	J	`jnl`	Concurrency and Loose Semantics of Open Graph Transformation Systems. Math. Struct. Comput. Sci. Reiko Heckel, Mercè Llabrés, Hartmut Ehrig, Fernando Orejas
2002	J	`jnl`	Pushout Complements for Partly Total Algebras. Math. Struct. Comput. Sci. Peter Burmeister, Mercè Llabrés, Francesc Rosselló
2001	—	`conf`	Towards a Double Pushout Transformation of Algebras. GETGRATS Closing Workshop Mercè Llabrés, Francesc Rosselló
1999	—	`conf`	A Bi-Categorical Axiomatisation of Concurrent Graph Rewriting. CTCS Fabio Gadducci, Reiko Heckel, Mercè Llabrés
1998	—	`conf`	Double-Pullback Graph Transitions: A Rule-Based Framework with Incomplete Information. TAGT Hartmut Ehrig, Reiko Heckel, Mercè Llabrés, Fernando Orejas, Julia Padberg, Grzegorz Rozenberg
1998	—	`conf`	Pushout Complements for Arbitrary Partial Algebras. TAGT Mercè Llabrés, Francesc Rosselló
1997	J	`jnl`	Double-Pushout Hypergraph Rewriting Using Total Conformisms. Fundam. Informaticae Mercè Llabrés, Francesc Rosselló