Meng Zhou

25 papers Journal 24Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
DeepTFtyper: an interpretable morphology-aware graph neural network for translating histopathology images into molecular subtypes in small cell lung cancer.
Briefings Bioinform.
Xin Li, Fan Yang, Yibo Zhang, Zijian Yang, Ruanqi Chen, Meng Zhou, Lin Yang
2025 J jnl
Leveraging pharmacovigilance data to predict population-scale toxicity profiles of checkpoint inhibitor immunotherapy.
Nat. Comput. Sci.
Dongxue Yan, Siqi Bao, Zicheng Zhang, Jie Sun, Meng Zhou
2025 J jnl
Multi-Omics Deep-Learning Prediction of Homologous Recombination Deficiency-Like Phenotype Improved Risk Stratification and Guided Therapeutic Decisions in Gynecological Cancers.
IEEE J. Biomed. Health Informatics
Yibo Zhang, Congcong Yan, Zijian Yang, Meng Zhou, Jie Sun
2024 J jnl
Consensus clustering with missing labels (ccml): a consensus clustering tool for multi-omics integrative prediction in cohorts with unequal sample coverage.
Briefings Bioinform.
Chuan-Xing Li, Hongyan Chen, Nazanin Zounemat Kermani, Ian M. Adcock, C. Magnus Sköld, Meng Zhou, Åsa M. Wheelock
2024 J jnl
Histopathology images-based deep learning prediction of prognosis and therapeutic response in small cell lung cancer.
npj Digit. Medicine
Yibo Zhang, Zijian Yang, Ruanqi Chen, Yanli Zhu, Li Liu, Jiyan Dong, Zicheng Zhang, Xujie Sun, Jianming Ying, Dongmei Lin, Lin Yang, Meng Zhou
2024 J jnl
Inference of Developmental Hierarchy and Functional States of Exhausted T Cells from Epigenetic Profiles with Deep Learning.
J. Chem. Inf. Model.
Hongyan Chen, Dongxue Yan, Jie Sun, Meng Zhou
2023 J jnl
Automatic detection and differential diagnosis of age-related macular degeneration from color fundus photographs using deep learning with hierarchical vision transformer.
Comput. Biol. Medicine
Ke Xu, Shenghai Huang, Zijian Yang, Yibo Zhang, Ye Fang, Gongwei Zheng, Bin Lin, Meng Zhou, Jie Sun
2023 J jnl
DeepDrRVO: A GAN-auxiliary two-step masked transformer framework benefits early recognition and differential diagnosis of retinal vascular occlusion from color fundus photographs.
Comput. Biol. Medicine
Zijian Yang, Yibo Zhang, Ke Xu, Jie Sun, Yue Wu, Meng Zhou
2022 J jnl
Deep learning-based advances and applications for single-cell RNA-sequencing data analysis.
Briefings Bioinform.
Siqi Bao, Ke Li, Congcong Yan, Zicheng Zhang, Jia Qu, Meng Zhou
2022 J jnl
Multiomics integration-based molecular characterizations of COVID-19.
Briefings Bioinform.
Chuanxing Li, Jing Gao, Zicheng Zhang, Lu Chen, Xun Li, Meng Zhou, Åsa M. Wheelock
2021 J jnl
Computational principles and practice for decoding immune contexture in the tumor microenvironment.
Briefings Bioinform.
Zicheng Zhang, Siqi Bao, Congcong Yan, Ping Hou, Meng Zhou, Jie Sun
2021 J jnl
Computational recognition of lncRNA signature of tumor-infiltrating B lymphocytes with potential implications in prognosis and immunotherapy of bladder cancer.
Briefings Bioinform.
Meng Zhou, Zicheng Zhang, Siqi Bao, Ping Hou, Congcong Yan, Jianzhong Su, Jie Sun
2021 J jnl
Machine learning-based integrative analysis of methylome and transcriptome identifies novel prognostic DNA methylation signature in uveal melanoma.
Briefings Bioinform.
Ping Hou, Siqi Bao, Dandan Fan, Congcong Yan, Jianzhong Su, Jia Qu, Meng Zhou
2021 J jnl
Mechanistically derived patient-level framework for precision medicine identifies a personalized immune prognostic signature in high-grade serous ovarian cancer.
Briefings Bioinform.
Hengqiang Zhao, Shanshan Gu, Siqi Bao, Congcong Yan, Zicheng Zhang, Ping Hou, Meng Zhou, Jie Sun
2020 J jnl
CFEA: a cell-free epigenome atlas in human diseases.
Nucleic Acids Res.
Fulong Yu, Kai Li, Shuangquan Li, Jiaqi Liu, Yan Zhang, Meng Zhou, Hengqiang Zhao, Hongyan Chen, Nan Wu, Zhihua Liu, Jianzhong Su
2020 J jnl
Computational identification of mutator-derived lncRNA signatures of genome instability for improving the clinical outcome of cancers: a case study in breast cancer.
Briefings Bioinform.
Siqi Bao, Hengqiang Zhao, Jian Yuan, Dandan Fan, Zicheng Zhang, Jianzhong Su, Meng Zhou
2020 J jnl
Landscape of SNPs-mediated lncRNA structural variations and their implication in human complex diseases.
Briefings Bioinform.
Hong Wang, Xiaoyan Lu, Fukun Chen, Yu Ding, Hewei Zheng, Lianzong Wang, Guosi Zhang, Jiaxin Yang, Yu Bai, Jing Li, Jingqi Wu, Meng Zhou, Liangde Xu
2020 J jnl
scTPA: a web tool for single-cell transcriptome analysis of pathway activation signatures.
Bioinform.
Yan Zhang, Yaru Zhang, Jun Hu, Ji Zhang, Fangjie Guo, Meng Zhou, Guijun Zhang, Fulong Yu, Jianzhong Su
2019 J jnl
Analysis of long noncoding RNAs highlights region-specific altered expression patterns and diagnostic roles in Alzheimer's disease.
Briefings Bioinform.
Meng Zhou, Hengqiang Zhao, Xinyu Wang, Jie Sun, Jianzhong Su
2019 J jnl
MetSigDis: a manually curated resource for the metabolic signatures of diseases.
Briefings Bioinform.
Liang Cheng, Haixiu Yang, Hengqiang Zhao, Xiaoya Pei, Hongbo Shi, Jie Sun, Yunpeng Zhang, Zhenzhen Wang, Meng Zhou
2018 J jnl
DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function.
Bioinform.
Liang Cheng, Yang Hu, Jie Sun, Meng Zhou, Qinghua Jiang
2016 — conf
InfDisSim: A novel method for measuring disease similarity based on information flow.
BIBM
Yang Hu, Meng Zhou, Hongbo Shi, Hong Ju, Qinghua Jiang, Liang Cheng
2014 J jnl
Network-based analysis of genotype-phenotype correlations between different inheritance modes.
Bioinform.
Dapeng Hao, Chuanxing Li, Shaojun Zhang, Jianping Lu, Yongshuai Jiang, Shiyuan Wang, Meng Zhou
2014 J jnl
The detection of risk pathways, regulated by miRNAs, via the integration of sample-matched miRNA-mRNA profiles and pathway structure.
J. Biomed. Informatics
Jing Li, Chunquan Li, Junwei Han, Chunlong Zhang, Desi Shang, Qianlan Yao, Yunpeng Zhang, Yanjun Xu, Wei Liu, Meng Zhou, Haixiu Yang, Fei Su, Xia Li
2011 J jnl
A novel network-based method for measuring the functional relationship between gene sets.
Bioinform.
Qianghu Wang, Jie Sun, Meng Zhou, Haixiu Yang, Yan Li, Xiang Li, Sali Lv, Xia Li, Yixue Li