Melissa J. Davis

22 papers B 1Journal 21
YearRankTypeTitle / Venue / Authors
2025 J jnl
mastR: an R package for automated identification of tissue-specific gene signatures in multi-group differential expression analysis.
Bioinform.
Jinjin Chen, Ahmed Mohamed, Dharmesh D. Bhuva, Melissa J. Davis, Chin Wee Tan
2024 J jnl
vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis.
BMC Bioinform.
Dharmesh D. Bhuva, Chin Wee Tan, Ning Liu, Holly J. Whitfield, Nicholas Papachristos, Samuel C. Lee, Malvika Kharbanda, Ahmed Mohamed, Melissa J. Davis
2023 J jnl
Sequence Representations and Their Utility for Predicting Protein-Protein Interactions.
IEEE ACM Trans. Comput. Biol. Bioinform.
Dhananjay Kimothi, Pravesh Biyani, James M. Hogan, Melissa J. Davis
2023 J jnl
vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis.
Nucleic Acids Res.
Ahmed Mohamed, Dharmesh D. Bhuva, Sam Lee, Ning Liu, Chin Wee Tan, Melissa J. Davis
2022 J jnl
Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT.
BMC Bioinform.
Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor
2022 J jnl
Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT.
CoRR
Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor
2020 J jnl
Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts.
CoRR
Aparna Elangovan, Melissa J. Davis, Karin Verspoor
2018 J jnl
Single sample scoring of molecular phenotypes.
BMC Bioinform.
Momeneh Foroutan, Dharmesh D. Bhuva, Ruqian Lyu, Kristy Horan, Joseph Cursons, Melissa J. Davis
2015 J jnl
RaftProt: mammalian lipid raft proteome database.
Nucleic Acids Res.
Anup Shah, David Chen, Akash R. Boda, Leonard J. Foster, Melissa J. Davis, Michelle M. Hill
2014 J jnl
Extracting reaction networks from databases-opening Pandora's box.
Briefings Bioinform.
Liam G. Fearnley, Melissa J. Davis, Mark A. Ragan, Lars Keld Nielsen
2014 J jnl
Supervised, semi-supervised and unsupervised inference of gene regulatory networks.
Briefings Bioinform.
Stefan Maetschke, Piyush B. Madhamshettiwar, Melissa J. Davis, Mark A. Ragan
2013 J jnl
RMaNI: Regulatory Module Network Inference framework.
BMC Bioinform.
Piyush B. Madhamshettiwar, Stefan Maetschke, Melissa J. Davis, Mark A. Ragan
2012 J jnl
Gene Ontology-driven inference of protein-protein interactions using inducers.
Bioinform.
Stefan Maetschke, Martin Simonsen, Melissa J. Davis, Mark A. Ragan
2012 J jnl
Mapping the stabilome: a novel computational method for classifying metabolic protein stability.
BMC Syst. Biol.
Ralph Patrick, Kim-Anh Lê Cao, Melissa J. Davis, Bostjan Kobe, Mikael Bodén
2012 J jnl
Visualising associations between paired 'omics' data sets.
BioData Min.
Ignacio González, Kim-Anh Lê Cao, Melissa J. Davis, Sébastien Déjean
2012 J jnl
mCOPA: analysis of heterogeneous features in cancer expression data.
J. Clin. Bioinform.
Chenwei Wang, Alperen Taciroglu, Stefan Maetschke, Colleen C. Nelson, Mark A. Ragan, Melissa J. Davis
2010 J jnl
A Semantic Web Ontology for Small Molecules and Their Biological Targets.
J. Chem. Inf. Model.
Joo-Young Choi, Melissa J. Davis, Andrew F. Newman, Mark A. Ragan
2010 J jnl
Automatic, context-specific generation of Gene Ontology slims.
BMC Bioinform.
Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark A. Ragan
2009 J jnl
Protein-protein interaction as a predictor of subcellular location.
BMC Syst. Biol.
Chang Shin, Simon Wong, Melissa J. Davis, Mark A. Ragan
2008 B conf
Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions.
APBC
Melissa J. Davis, Andrew F. Newman, Imran Khan, Jane Hunter, Mark A. Ragan
2006 J jnl
LOCATE: a mouse protein subcellular localization database.
Nucleic Acids Res.
J. Lynn Fink, Rajith N. Aturaliya, Melissa J. Davis, Fasheng Zhang, Kelly Hanson, Melvena S. Teasdale, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Rohan D. Teasdale
2006 J jnl
MemO: A Consensus Approach to the Annotation of a Protein's Membrane Organization.
Silico Biol.
Melissa J. Davis, Fasheng Zhang, Zheng Yuan, Rohan D. Teasdale