Meliha Yetisgen

120 papers B 4C 1Misc 21Journal 62Unranked 32

Year	Rank	Type	Title / Venue / Authors
2026	—	`conf`	ImageCLEF 2026: Multimodal Challenges in Medicine, Science, Agritech, and Security. ECIR (4) Bogdan Ionescu, Henning Müller, Dan-Cristian Stanciu, Ahmedkhan Radzhabov, Alba García Seco de Herrera, Alexandra-Georgiana Andrei, Alexandra Baicoianu, Ana Neacsu, Andrea M. Storås, Asma Ben Abacha, Benjamin Bracke, Lea Reinartz, Benjamin Lecouteux, Christoph M. Friedrich, Cynthia Sabrina Schmidt, Corneliu Florea, Diandra Fabre, Didier Schwab, Dimitar Dimitrov, Emmanuelle Esperança-Rodier, Mihai Gabriel Constantin, Hendrik Damm, Henning Schäfer, Ivan Koychev, Josiane Mothe, Liviu-Daniel Stefan, Maja J. Hjuler, Mehmet Kurt, Meliha Yetisgen, Michael A. Riegler, Mihai Dogariu, Mihai Ivanovici, Ming Shan Hee, Mohammad El Sakka, Momina Ahsan, Obioma Pelka, Pål Halvorsen, Preslav Nakov, Raphael Brüngel, Sarfraz Ahmad, Steven Alexander Hicks, Sushant Gautam, Tabea Margareta Grace Pakull, Bahadir Eryilmaz, Vajira Thambawita, Vassili Kovalev, Wen-Wai Yim, Yuri Prokopchuk, Zhuohan Xie
2026	J	`jnl`	RADAR: A Multimodal Benchmark for 3D Image-Based Radiology Report Review. CoRR Zhaoyi Sun, Minal Jagtiani, Wen-Wai Yim, Fei Xia, Martin L. Gunn, Meliha Yetisgen, Asma Ben Abacha
2026	J	`jnl`	RadTimeline: Timeline Summarization for Longitudinal Radiological Lung Findings. CoRR Sitong Zhou, Meliha Yetisgen, Mari Ostendorf
2025	J	`jnl`	A Scoping Review of Natural Language Processing in Addressing Medically Inaccurate Information: Errors, Misinformation, and Hallucination. CoRR Zhaoyi Sun, Wen-Wai Yim, Özlem Uzuner, Fei Xia, Meliha Yetisgen
2025	J	`jnl`	A Systematic Analysis of Large Language Models with RAG-enabled Dynamic Prompting for Medical Error Detection and Correction. CoRR Farzad Ahmed, Joniel Augustine Jerome, Meliha Yetisgen, Özlem Uzuner
2025	J	`jnl`	A scoping review of natural language processing in addressing medically inaccurate information: Errors, misinformation, and hallucination. J. Biomed. Informatics Zhaoyi Sun, Wen-Wai Yim, Özlem Uzuner, Fei Xia, Meliha Yetisgen
2025	J	`jnl`	Adapting Biomedical Abstracts into Plain language using Large Language Models. CoRR Haritha Gangavarapu, Giridhar Kaushik Ramachandran, Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
2025	J	`jnl`	Automated Identification of Incidentalomas Requiring Follow-Up: A Multi-Anatomy Evaluation of LLM-Based and Supervised Approaches. CoRR Namu Park, Farzad Ahmed, Zhaoyi Sun, Kevin Lybarger, Ethan Breinhorst, Julie Hu, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
2025	J	`jnl`	DermaVQA-DAS: Dermatology Assessment Schema (DAS) & Datasets for Closed-Ended Question Answering & Segmentation in Patient-Generated Dermatology Images. CoRR Wen-Wai Yim, Yujuan Fu, Asma Ben Abacha, Meliha Yetisgen, Noel Codella, Roberto A. Novoa, Josep Malvehy
2025	—	`conf`	Does Data Contamination Detection Work (Well) for LLMs? A Survey and Evaluation on Detection Assumptions. NAACL (Findings) Yujuan Fu, Özlem Uzuner, Meliha Yetisgen, Fei Xia
2025	J	`jnl`	Identifying Imaging Follow-Up in Radiology Reports: A Comparative Analysis of Traditional ML and LLM Approaches. CoRR Namu Park, Giridhar Kaushik Ramachandran, Kevin Lybarger, Fei Xia, Özlem Uzuner, Meliha Yetisgen, Martin L. Gunn
2025	J	`jnl`	Large Language Model-Based Agents for Automated Research Reproducibility: An Exploratory Study in Alzheimer's Disease. CoRR Nicholas J. Dobbins, Christelle Xiong, Kristine Lan, Meliha Yetisgen
2025	—	`conf`	MEDEC: A Benchmark for Medical Error Detection and Correction in Clinical Notes. ACL (Findings) Asma Ben Abacha, Wen-Wai Yim, Yujuan Fu, Zhaoyi Sun, Meliha Yetisgen, Fei Xia, Thomas Lin
2025	J	`jnl`	MORQA: Benchmarking Evaluation Metrics for Medical Open-Ended Question Answering. CoRR Wen-Wai Yim, Asma Ben Abacha, Zixuan Yu, Robert Doerning, Fei Xia, Meliha Yetisgen
2025	—	`conf`	Spurious Correlations and Beyond: Understanding and Mitigating Shortcut Learning in SDOH Extraction with Large Language Models. ACL (2) Fardin Ahsan Sakib, Ziwei Zhu, Karen Trister Grace, Meliha Yetisgen, Özlem Uzuner
2025	J	`jnl`	Spurious Correlations and Beyond: Understanding and Mitigating Shortcut Learning in SDOH Extraction with Large Language Models. CoRR Fardin Ahsan Sakib, Ziwei Zhu, Karen Trister Grace, Meliha Yetisgen, Özlem Uzuner
2025	J	`jnl`	Tailoring task arithmetic to address bias in models trained on multi-institutional datasets. J. Biomed. Informatics Xiruo Ding, Zhecheng Sheng, Brian Hur, Justin Tauscher, Dror Ben-Zeev, Meliha Yetisgen, Serguei Pakhomov, Trevor Cohen
2025	J	`jnl`	Traj-CoA: Patient Trajectory Modeling via Chain-of-Agents for Lung Cancer Risk Prediction. CoRR Sihang Zeng, Yujuan Fu, Sitong Zhou, Zixuan Yu, Lucas Jing Liu, Jun Wen, Matthew Thompson, Ruth Etzioni, Meliha Yetisgen
2025	—	`conf`	TrajSurv: Learning Continuous Latent Trajectories from Electronic Health Records for Trustworthy Survival Prediction. MLHC Sihang Zeng, Lucas Jing Liu, Jun Wen, Meliha Yetisgen, Ruth Etzioni, Gang Luo
2025	J	`jnl`	TrajSurv: Learning Continuous Latent Trajectories from Electronic Health Records for Trustworthy Survival Prediction. CoRR Sihang Zeng, Lucas Jing Liu, Jun Wen, Meliha Yetisgen, Ruth Etzioni, Gang Luo
2025	J	`jnl`	UW-BioNLP at ChemoTimelines 2025: Thinking, Fine-Tuning, and Dictionary-Enhanced LLM Systems for Chemotherapy Timeline Extraction. CoRR Tianmai M. Zhang, Zhaoyi Sun, Sihang Zeng, Chenxi Li, Neil F. Abernethy, Barbara D. Lam, Fei Xia, Meliha Yetisgen
2025	J	`jnl`	WoundcareVQA: A multilingual visual question answering benchmark dataset for wound care. J. Biomed. Informatics Wen-Wai Yim, Asma Ben Abacha, Robert Doerning, Chia-Yu Chen, Jiaying Xu, Anita Subbarao, Zixuan Yu, Fei Xia, M. Kennedy Hall, Meliha Yetisgen
2024	—	`conf`	A Novel Corpus of Annotated Medical Imaging Reports and Information Extraction Results Using BERT-based Language Models. LREC/COLING Namu Park, Kevin Lybarger, Giridhar Kaushik Ramachandran, Spencer Lewis, Aashka Damani, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
2024	J	`jnl`	A Novel Corpus of Annotated Medical Imaging Reports and Information Extraction Results Using BERT-based Language Models. CoRR Namu Park, Kevin Lybarger, Giridhar Kaushik Ramachandran, Spencer Lewis, Aashka Damani, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
2024	—	`conf`	Advancing Multimedia Retrieval in Medical, Social Media and Content Recommendation Applications with ImageCLEF 2024. ECIR (6) Bogdan Ionescu, Henning Müller, Ana-Maria Claudia Dragulinescu, Ahmad Idrissi-Yaghir, Ahmedkhan Radzhabov, Alba Garcia Seco de Herrera, Alexandra Andrei, Alexandru Stan, Andrea M. Storås, Asma Ben Abacha, Benjamin Lecouteux, Benno Stein, Cécile Macaire, Christoph M. Friedrich, Cynthia S. Schmidt, Didier Schwab, Emmanuelle Esperança-Rodier, George Ioannidis, Griffin Adams, Henning Schäfer, Hugo Manguinhas, Ioan Coman, Johanna Schöler, Johannes Kiesel, Johannes Rückert, Louise Bloch, Martin Potthast, Maximilian Heinrich, Meliha Yetisgen, Michael A. Riegler, Neal Snider, Pål Halvorsen, Raphael Brüngel, Steven Alexander Hicks, Vajira Thambawita, Vassili Kovalev, Yuri Prokopchuk, Wen-Wai Yim
2024	J	`jnl`	BioMistral-NLU: Towards More Generalizable Medical Language Understanding through Instruction Tuning. CoRR Yujuan Fu, Giridhar Kaushik Ramachandran, Namu Park, Kevin Lybarger, Fei Xia, Özlem Uzuner, Meliha Yetisgen
2024	J	`jnl`	CACER: Clinical Concept Annotations for Cancer Events and Relations. CoRR Yujuan Fu, Giridhar Kaushik Ramachandran, Ahmad Halwani, Bridget T. McInnes, Fei Xia, Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
2024	J	`jnl`	CACER: Clinical concept Annotations for Cancer Events and Relations. J. Am. Medical Informatics Assoc. Yujuan Fu, Giridhar Kaushik Ramachandran, Ahmad Halwani, Bridget T. McInnes, Fei Xia, Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
2024	J	`jnl`	Clinical natural language processing for secondary uses. J. Biomed. Informatics Yanjun Gao, Diwakar Mahajan, Özlem Uzuner, Meliha Yetisgen
2024	—	`conf`	DermaVQA: A Multilingual Visual Question Answering Dataset for Dermatology. MICCAI (5) Wen-Wai Yim, Yujuan Fu, Zhaoyi Sun, Asma Ben Abacha, Meliha Yetisgen, Fei Xia
2024	J	`jnl`	Does Data Contamination Detection Work (Well) for LLMs? A Survey and Evaluation on Detection Assumptions. CoRR Yujuan Fu, Özlem Uzuner, Meliha Yetisgen, Fei Xia
2024	—	`conf`	Extracting Social Determinants of Health from Pediatric Patient Notes Using Large Language Models: Novel Corpus and Methods. LREC/COLING Yujuan Fu, Giridhar Kaushik Ramachandran, Nicholas J. Dobbins, Namu Park, Michael Leu, Abby R. Rosenberg, Kevin Lybarger, Fei Xia, Özlem Uzuner, Meliha Yetisgen
2024	J	`jnl`	Extracting Social Determinants of Health from Pediatric Patient Notes Using Large Language Models: Novel Corpus and Methods. CoRR Yujuan Fu, Giridhar Kaushik Ramachandran, Nicholas J. Dobbins, Namu Park, Michael Leu, Abby R. Rosenberg, Kevin Lybarger, Fei Xia, Özlem Uzuner, Meliha Yetisgen
2024	—	`conf`	Is That the Right Dose? Investigating Generative Language Model Performance on Veterinary Prescription Text Analysis. BioNLP@ACL Brian Hur, Lucy Lu Wang, Laura Hardefeldt, Meliha Yetisgen
2024	J	`jnl`	Large Language Model Capabilities in Perioperative Risk Prediction and Prognostication. CoRR Philip Chung, Christine T. Fong, Andrew M. Walters, Nima Aghaeepour, Meliha Yetisgen, Vikas N. O'Reilly-Shah
2024	J	`jnl`	Large language models for biomedicine: foundations, opportunities, challenges, and best practices. J. Am. Medical Informatics Assoc. Satya S. Sahoo, Joseph M. Plasek, Hua Xu, Özlem Uzuner, Trevor Cohen, Meliha Yetisgen, Hongfang Liu, Stéphane M. Meystre, Yanshan Wang
2024	J	`jnl`	MEDEC: A Benchmark for Medical Error Detection and Correction in Clinical Notes. CoRR Asma Ben Abacha, Wen-Wai Yim, Yujuan Fu, Zhaoyi Sun, Meliha Yetisgen, Fei Xia, Thomas Lin
2024	—	`conf`	Overview of the ImageCLEF 2024: Multimedia Retrieval in Medical Applications. CLEF (2) Bogdan Ionescu, Henning Müller, Ana-Maria Dragulinescu, Johannes Rückert, Asma Ben Abacha, Alba García Seco de Herrera, Louise Bloch, Raphael Brüngel, Ahmad Idrissi-Yaghir, Henning Schäfer, Cynthia Sabrina Schmidt, Tabea Margareta Grace Pakull, Hendrik Damm, Benjamin Bracke, Christoph M. Friedrich, Alexandra-Georgiana Andrei, Yuri Prokopchuk, Dzmitry Karpenka, Ahmedkhan Radzhabov, Vassili Kovalev, Cécile Macaire, Didier Schwab, Benjamin Lecouteux, Emmanuelle Esperança-Rodier, Wen-Wai Yim, Yujuan Fu, Zhaoyi Sun, Meliha Yetisgen, Fei Xia, Steven Alexander Hicks, Michael A. Riegler, Vajira Thambawita, Andrea M. Storås, Pål Halvorsen, Maximilian Heinrich, Johannes Kiesel, Martin Potthast, Benno Stein
2024	—	`conf`	Overview of the MEDIQA-CORR 2024 Shared Task on Medical Error Detection and Correction. ClinicalNLP@NAACL Asma Ben Abacha, Wen-Wai Yim, Yujuan Fu, Zhaoyi Sun, Fei Xia, Meliha Yetisgen
2024	—	`conf`	Overview of the MEDIQA-M3G 2024 Shared Task on Multilingual Multimodal Medical Answer Generation. ClinicalNLP@NAACL Wen-Wai Yim, Asma Ben Abacha, Yujuan Fu, Zhaoyi Sun, Fei Xia, Meliha Yetisgen, Martin Krallinger
2024	—	`conf`	Overview of the MEDIQA-MAGIC Task at ImageCLEF 2024: Multimodal And Generative TelemedICine in Dermatology. CLEF (Working Notes) Wen-Wai Yim, Asma Ben Abacha, Yujuan Fu, Zhaoyi Sun, Meliha Yetisgen, Fei Xia
2024	—	`conf`	To Err Is Human, How about Medical Large Language Models? Comparing Pre-trained Language Models for Medical Assessment Errors and Reliability. LREC/COLING Wen-Wai Yim, Yujuan Fu, Asma Ben Abacha, Meliha Yetisgen
2023	J	`jnl`	ACI-BENCH: a Novel Ambient Clinical Intelligence Dataset for Benchmarking Automatic Visit Note Generation. CoRR Wen-Wai Yim, Yujuan Fu, Asma Ben Abacha, Neal Snider, Thomas Lin, Meliha Yetisgen
2023	J	`jnl`	Advancements in extracting social determinants of health information from narrative text. J. Am. Medical Informatics Assoc. Kevin Lybarger, Oliver J. Bear Don't Walk IV, Meliha Yetisgen, Özlem Uzuner
2023	J	`jnl`	Backdoor Adjustment of Confounding by Provenance for Robust Text Classification of Multi-institutional Clinical Notes. CoRR Xiruo Ding, Zhecheng Sheng, Meliha Yetisgen, Serguei Pakhomov, Trevor Cohen
2023	—	`conf`	Building blocks for complex tasks: Robust generative event extraction for radiology reports under domain shifts. ClinicalNLP@ACL Sitong Zhou, Meliha Yetisgen, Mari Ostendorf
2023	J	`jnl`	Building blocks for complex tasks: Robust generative event extraction for radiology reports under domain shifts. CoRR Sitong Zhou, Meliha Yetisgen, Mari Ostendorf
2023	J	`jnl`	Event-Based Clinical Finding Extraction from Radiology Reports with Pre-trained Language Model. J. Digit. Imaging Wilson Lau, Kevin Lybarger, Martin L. Gunn, Meliha Yetisgen
2023	J	`jnl`	Extracting medication changes in clinical narratives using pre-trained language models. J. Biomed. Informatics Giridhar Kaushik Ramachandran, Kevin Lybarger, Yaya Liu, Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Meliha Yetisgen, Özlem Uzuner
2023	—	`conf`	ImageCLEF 2023 Highlight: Multimedia Retrieval in Medical, Social Media and Content Recommendation Applications. ECIR (3) Bogdan Ionescu, Henning Müller, Ana-Maria Claudia Dragulinescu, Adrian Popescu, Ahmad Idrissi-Yaghir, Alba García Seco de Herrera, Alexandra Andrei, Alexandru Stan, Andrea M. Storås, Asma Ben Abacha, Christoph M. Friedrich, George Ioannidis, Griffin Adams, Henning Schäfer, Hugo Manguinhas, Ihar Filipovich, Ioan Coman, Jérôme Deshayes, Johanna Schöler, Johannes Rückert, Liviu-Daniel Stefan, Louise Bloch, Meliha Yetisgen, Michael A. Riegler, Mihai Dogariu, Mihai Gabriel Constantin, Neal Snider, Nikolaos Papachrysos, Pål Halvorsen, Raphael Brüngel, Serge Kozlovski, Steven Hicks, Thomas de Lange, Vajira Thambawita, Vassili Kovalev, Wen-Wai Yim
2023	J	`jnl`	Improving model transferability for clinical note section classification models using continued pretraining. J. Am. Medical Informatics Assoc. Weipeng Zhou, Meliha Yetisgen, Majid Afshar, Yanjun Gao, Guergana Savova, Timothy A. Miller
2023	J	`jnl`	LeafAI: query generator for clinical cohort discovery rivaling a human programmer. CoRR Nicholas J. Dobbins, Bin Han, Weipeng Zhou, Kristine Lan, H. Nina Kim, Robert D. Harrington, Özlem Uzuner, Meliha Yetisgen
2023	J	`jnl`	LeafAI: query generator for clinical cohort discovery rivaling a human programmer. J. Am. Medical Informatics Assoc. Nicholas J. Dobbins, Bin Han, Weipeng Zhou, Kristine Lan, H. Nina Kim, Robert D. Harrington, Özlem Uzuner, Meliha Yetisgen
2023	J	`jnl`	Leveraging natural language processing to augment structured social determinants of health data in the electronic health record. J. Am. Medical Informatics Assoc. Kevin Lybarger, Nicholas J. Dobbins, Ritche Long, Angad P. Singh, Patrick Wedgeworth, Özlem Uzuner, Meliha Yetisgen
2023	—	`conf`	Overview of the ImageCLEF 2023: Multimedia Retrieval in Medical, Social Media and Internet Applications. CLEF Bogdan Ionescu, Henning Müller, Ana-Maria Dragulinescu, Wen-Wai Yim, Asma Ben Abacha, Neal Snider, Griffin Adams, Meliha Yetisgen, Johannes Rückert, Alba García Seco de Herrera, Christoph M. Friedrich, Louise Bloch, Raphael Brüngel, Ahmad Idrissi-Yaghir, Henning Schäfer, Steven Alexander Hicks, Michael A. Riegler, Vajira Thambawita, Andrea M. Storås, Pål Halvorsen, Nikolaos Papachrysos, Johanna Schöler, Debesh Jha, Alexandra-Georgiana Andrei, Ioan Coman, Vassili Kovalev, Ahmedkhan Radzhabov, Yuri Prokopchuk, Liviu-Daniel Stefan, Mihai Gabriel Constantin, Mihai Dogariu, Jérôme Deshayes, Adrian Popescu
2023	—	`conf`	Overview of the MEDIQA-Chat 2023 Shared Tasks on the Summarization & Generation of Doctor-Patient Conversations. ClinicalNLP@ACL Asma Ben Abacha, Wen-Wai Yim, Griffin Adams, Neal Snider, Meliha Yetisgen
2023	—	`conf`	Overview of the MEDIQA-Sum Task at ImageCLEF 2023: Summarization and Classification of Doctor-Patient Conversations. CLEF (Working Notes) Wen-Wai Yim, Asma Ben Abacha, Griffin Adams, Neal Snider, Meliha Yetisgen
2023	—	`conf`	Prompt-based Extraction of Social Determinants of Health Using Few-shot Learning. ClinicalNLP@ACL Giridhar Kaushik Ramachandran, Yujuan Fu, Bin Han, Kevin Lybarger, Nicholas J. Dobbins, Özlem Uzuner, Meliha Yetisgen
2023	J	`jnl`	Prompt-based Extraction of Social Determinants of Health Using Few-shot Learning. CoRR Giridhar Kaushik Ramachandran, Yujuan Fu, Bin Han, Kevin Lybarger, Nicholas J. Dobbins, Özlem Uzuner, Meliha Yetisgen
2023	J	`jnl`	The 2022 n2c2/UW Shared Task on Extracting Social Determinants of Health. CoRR Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
2023	J	`jnl`	The 2022 n2c2/UW shared task on extracting social determinants of health. J. Am. Medical Informatics Assoc. Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
2022	Misc	`conf`	A Corpus of Radiology Reports From Multiple Imaging Modalities With Fine-grained Event-based Annotations. AMIA Kevin Lybarger, Namu Park, Sitong Zhou, Aashka Damani, Alison Brennan, Jagjeet Gill, Nianiella Dorvall, Vy Huynh, Spencer Lewis, Martin L. Gunn, Özlem Uzuner, Meliha Yetisgen
2022	J	`jnl`	Call for papers: Special issue on clinical natural language processing for secondary use applications. J. Biomed. Informatics Meliha Yetisgen, Özlem Uzuner, Yanjun Gao, Diwakar Mahajan
2022	J	`jnl`	Extracting Medication Changes in Clinical Narratives using Pre-trained Language Models. CoRR Giridhar Kaushik Ramachandran, Kevin Lybarger, Yaya Liu, Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Meliha Yetisgen, Özlem Uzuner
2022	J	`jnl`	Generalizing through Forgetting - Domain Generalization for Symptom Event Extraction in Clinical Notes. CoRR Sitong Zhou, Kevin Lybarger, Meliha Yetisgen, Mari Ostendorf
2022	J	`jnl`	Leveraging Natural Language Processing to Augment Structured Social Determinants of Health Data in the Electronic Health Record. CoRR Kevin Lybarger, Nicholas J. Dobbins, Ritche Long, Angad P. Singh, Patrick Wedgeworth, Özlem Ozuner, Meliha Yetisgen
2022	J	`jnl`	The Leaf Clinical Trials Corpus: a new resource for query generation from clinical trial eligibility criteria. CoRR Nicholas J. Dobbins, Tony Mullen, Özlem Uzuner, Meliha Yetisgen
2021	Misc	`conf`	A New Corpus for Clinical Findings in Radiology Reports. AMIA Wilson Lau, David Wayne, Spencer Lewis, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
2021	Misc	`conf`	An exploration of information extraction models on transcribed patient visits. AMIA Kevin Lybarger, Erica Qiao, Meliha Yetisgen
2021	J	`jnl`	Annotating social determinants of health using active learning, and characterizing determinants using neural event extraction. J. Biomed. Informatics Kevin Lybarger, Mari Ostendorf, Meliha Yetisgen
2021	Misc	`conf`	Automatic Assignment of Radiology Examination Protocols Using Pre-trained Language Models with Knowledge Distillation. AMIA Wilson Lau, Laura Aaltonen, Martin L. Gunn, Meliha Yetisgen
2021	Misc	`conf`	Automatic Detection of Surgical Site Infections Using EHR Data. AMIA Arjun Chakraborty, Kevin Lybarger, Dustin Long, Vikas O. Shah, Meliha Yetisgen
2021	Misc	`conf`	Comparison of Three Phrase Chunking Approaches on Medical Concept Coverage in Clinical Text. AMIA Grace K. Turner, Meliha Yetisgen
2021	J	`jnl`	Event-based clinical findings extraction from radiology reports with pre-trained language model. CoRR Wilson Lau, Kevin Lybarger, Martin L. Gunn, Meliha Yetisgen
2021	J	`jnl`	Extracting COVID-19 diagnoses and symptoms from clinical text: A new annotated corpus and neural event extraction framework. J. Biomed. Informatics Kevin Lybarger, Mari Ostendorf, Matthew Thompson, Meliha Yetisgen
2021	J	`jnl`	Extracting Radiological Findings With Normalized Anatomical Information Using a Span-Based BERT Relation Extraction Model. CoRR Kevin Lybarger, Aashka Damani, Martin L. Gunn, Özlem Uzuner, Meliha Yetisgen
2021	Misc	`conf`	Identifying ARDS using the Hierarchical Attention Network with Sentence Objectives Framework. AMIA Kevin Lybarger, Linzee Mabrey, Matthew R. Thau, Pavan K. Bhatraju, Mark M. Wurfel, Meliha Yetisgen
2021	J	`jnl`	Identifying ARDS using the Hierarchical Attention Network with Sentence Objectives Framework. CoRR Kevin Lybarger, Linzee Mabrey, Matthew Thau, Pavan K. Bhatraju, Mark M. Wurfel, Meliha Yetisgen
2021	J	`jnl`	Jointly Learning Clinical Entities and Relations with Contextual Language Models and Explicit Context. CoRR Paul Barry, Sam Henry, Meliha Yetisgen, Bridget T. McInnes, Özlem Uzuner
2021	J	`jnl`	Performance of Automatic De-identification Across Different Note Types. CoRR Nicholas J. Dobbins, David Wayne, Kahyun Lee, Özlem Uzuner, Meliha Yetisgen
2021	J	`jnl`	Transferability of Neural Network-based De-identification Systems. CoRR Kahyun Lee, Nicholas J. Dobbins, Bridget T. McInnes, Meliha Yetisgen, Özlem Uzuner
2021	J	`jnl`	Transferability of neural network clinical deidentification systems. J. Am. Medical Informatics Assoc. Kahyun Lee, Nicholas J. Dobbins, Bridget T. McInnes, Meliha Yetisgen, Özlem Uzuner
2020	Misc	`conf`	A Novel Corpus With Detailed Annotations of Social Determinants of Health. AMIA Kevin Lybarger, Elizabeth Chang, Kylie Kerker, Jolie Shen, Erica Qiao, Özlem Uzuner, Mari Ostendorf, Meliha Yetisgen
2020	B	`conf`	Alignment Annotation for Clinic Visit Dialogue to Clinical Note Sentence Language Generation. LREC Wen-Wai Yim, Meliha Yetisgen, Jenny Huang, Micah Grossman
2020	J	`jnl`	Annotating Social Determinants of Health Using Active Learning, and Characterizing Determinants Using Neural Event Extraction. CoRR Kevin Lybarger, Mari Ostendorf, Meliha Yetisgen
2020	J	`jnl`	Automatic Assignment of Radiology Examination Protocols Using Pre-trained Language Models with Knowledge Distillation. CoRR Wilson Lau, Laura Aaltonen, Martin L. Gunn, Meliha Yetisgen
2020	J	`jnl`	Extracting COVID-19 Diagnoses and Symptoms From Clinical Text: A New Annotated Corpus and Neural Event Extraction Framework. CoRR Kevin Lybarger, Mari Ostendorf, Matthew Thompson, Meliha Yetisgen
2020	Misc	`conf`	Jointly Learning Clinical Entities and Relations with Contextual Language Models and Explicit Context. AMIA Paul Barry, Sam Henry, Meliha Yetisgen, Bridget T. McInnes, Özlem Uzuner
2020	J	`jnl`	Predicting severe clinical events by learning about life-saving actions and outcomes using distant supervision. J. Biomed. Informatics Dae Hyun Lee, Meliha Yetisgen, Lucy Vanderwende, Eric Horvitz
2019	Misc	`conf`	Automatic Identification of Social Determinants of Health from Clinical Records. AMIA Kevin Lybarger, Mari Ostendorf, Özlem Uzuner, Meliha Yetisgen
2019	J	`jnl`	Extraction and Analysis of Clinically Important Follow-up Recommendations in a Large Radiology Dataset. CoRR Wilson Lau, Thomas H. Payne, Özlem Uzuner, Meliha Yetisgen
2018	J	`jnl`	Asynchronous Speech Recognition Affects Physician Editing of Notes. Appl. Clin. Inform. Kevin Lybarger, Mari Ostendorf, Eve A. Riskin, Thomas H. Payne, Andrew A. White, Meliha Yetisgen
2018	Misc	`conf`	Hierarchical Attention-Based Prediction Model for Discovering the Persistence of Chronic Opioid Therapy from a large Clinical Dataset. AMIA Ramón Maldonado, Mark Sullivan, Meliha Yetisgen, Sanda M. Harabagiu
2018	Misc	`conf`	Learning about Life-Saving Interventions to Predict the Risk of Acute Organ Failures. AMIA Dae Hyun Lee, Meliha Yetisgen, Eric Horvitz
2018	Misc	`conf`	Using Neural Multi-task Learning to Extract Substance Abuse Information from Clinical Notes. AMIA Kevin Lybarger, Meliha Yetisgen, Mari Ostendorf
2017	—	`conf`	Automatic Identification of Substance Abuse Events from Clinical Text. CRI Meliha Yetisgen, Lucy Vanderwende
2017	B	`conf`	Automatic Identification of Substance Abuse from Social History in Clinical Text. AIME Meliha Yetisgen, Lucy Vanderwende
2017	—	`conf`	Automatic Liver Cancer Stage Prediction From Free-Text Clinical Notes. CRI Wen-Wai Yim, Sharon W. Kwan, Meliha Yetisgen
2017	Misc	`conf`	Automatically Detecting Likely Edits in Clinical Notes Created Using Automatic Speech Recognition. AMIA Kevin Lybarger, Mari Ostendorf, Meliha Yetisgen
2017	Misc	`conf`	Classification of hepatocellular carcinoma stages from free-text clinical and radiology reports. AMIA Wen-Wai Yim, Sharon W. Kwan, Guy Johnson, Meliha Yetisgen
2017	J	`jnl`	Classifying tumor event attributes in radiology reports. J. Assoc. Inf. Sci. Technol. Wen-Wai Yim, Sharon W. Kwan, Meliha Yetisgen
2017	—	`conf`	Clinical Event Detection with Hybrid Neural Architecture. BioNLP Adyasha Maharana, Meliha Yetisgen
2017	Misc	`conf`	Clustering Vital Sign Observations Using Unsupervised Random Forest. AMIA Dae Hyun Lee, Meliha Yetisgen
2017	Misc	`conf`	Improving Electronic Inpatient Progress Notes Using Voice: Results from the VGEENS Project. AMIA Thomas H. Payne, Andrew Markiel, William D. Alonso, Ross J. Lordon, Kevin Lybarger, Meliha Yetisgen, Jennifer M. Zech, Andrew A. White
2016	—	`conf`	A New Way of Representing Clinical Reports for Rapid Phenotyping. CRI Meliha Yetisgen, Lucy Vanderwende, Tony Black, Sean D. Mooney, Peter Tarczy-Hornoch
2016	B	`conf`	Annotating and Detecting Medical Events in Clinical Notes. LREC Prescott Klassen, Fei Xia, Meliha Yetisgen
2016	Misc	`conf`	Annotation of Tumor Reference Resolution and Tumor Characteristics for Cancer Liver Stage Prediction. AMIA Wen-Wai Yim, Tyler Denman, Sharon W. Kwan, Meliha Yetisgen
2016	—	`conf`	Automatic Identification of Lifestyle and Environmental Factors from Social History in Clinical Text. CRI Meliha Yetisgen, Elena Pellicer, David R. Crosslin, Lucy Vanderwende
2016	—	`conf`	Identification of an Acute Kidney Injury Phenotype from Electronic Health Record Data. CRI Michael G. Semanik, Meliha Yetisgen, Ari Pollack
2016	—	`conf`	Tumor Information Extraction in Radiology Reports for Hepatocellular Carcinoma Patients. CRI Wen-Wai Yim, Tyler Denman, Sharon W. Kwan, Meliha Yetisgen
2016	J	`jnl`	Tumor reference resolution and characteristic extraction in radiology reports for liver cancer stage prediction. J. Biomed. Informatics Wen-Wai Yim, Sharon W. Kwan, Meliha Yetisgen
2015	Misc	`conf`	Annotating Recommendation Sentences in Radiology Reports. AMIA Meliha Yetisgen, Prescott Klassen, Lucas McCarthy, Thomas H. Payne, Martin L. Gunn
2015	—	`conf`	Annotation of Clinically Important Follow-up Recommendations in Radiology Reports. Louhi@EMNLP Meliha Yetisgen, Prescott Klassen, Lucas McCarthy, Elena Pellicer, Tom Payne, Martin L. Gunn
2015	Misc	`conf`	Annotation of Disease Characteristics for Cancer Liver Stage Prediction. AMIA Wen-Wai Yim, Sharon W. Kwan, Guy Johnson, Meliha Yetisgen
2015	—	`conf`	In-depth annotation for patient level liver cancer staging. Louhi@EMNLP Wen-Wai Yim, Sharon W. Kwan, Meliha Yetisgen
2014	Misc	`conf`	A New Corpus for Structured Microbiology Results. AMIA Wen-Wai Yim, Xavier Engle, Heather L. Evans, Meliha Yetisgen
2014	B	`conf`	Annotating Clinical Events in Text Snippets for Phenotype Detection. LREC Prescott Klassen, Fei Xia, Lucy Vanderwende, Meliha Yetisgen
2014	—	`conf`	Biomedical/Clinical NLP. COLING (Tutorials) Özlem Uzuner, Meliha Yetisgen, Amber Stubbs
2002	—	`conf`	Data Mining in Deductive Databases Using Query Flocks: Extended Abstract. JCIS Ismail H. Toroslu, Meliha Yetisgen
2000	C	`conf`	Data Mining Using Query Flocks with Views. DEXA Meliha Yetisgen, Ismail H. Toroslu