Melanie I. Stefan

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2022 J jnl
Ten simple rules for failing successfully in academia.
PLoS Comput. Biol.
Stefan Gaillard, Tara van Viegen, Michele Veldsman, Melanie I. Stefan, Veronika Cheplygina
2022 J jnl
Validation Through Collaboration: Encouraging Team Efforts to Ensure Internal and External Validity of Computational Models of Biochemical Pathways.
Neuroinformatics
Richard Fitzpatrick, Melanie I. Stefan
2020 J jnl
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
J. Integr. Bioinform.
Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik-Sheriff, David P. Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers
2019 J jnl
A multi-state model of the CaMKII dodecamer suggests a role for calmodulin in maintenance of autophosphorylation.
PLoS Comput. Biol.
Matthew C. Pharris, Neal M. Patel, Tyler G. VanDyk, Thomas M. Bartol, Terrence J. Sejnowski, Mary B. Kennedy, Melanie I. Stefan, Tamara Kinzer-Ursem
2018 J jnl
FindSim: A Framework for Integrating Neuronal Data and Signaling Models.
Frontiers Neuroinformatics
Nisha A. Viswan, Gubbi Vani HarshaRani, Melanie I. Stefan, Upinder S. Bhalla
2017 J jnl
Cooperative binding mitigates the high-dose hook effect.
BMC Syst. Biol.
Ranjita Dutta Roy, Christian Rosenmund, Melanie I. Stefan
2017 J jnl
Women are underrepresented in computational biology: An analysis of the scholarly literature in biology, computer science and computational biology.
PLoS Comput. Biol.
Kevin S. Bonham, Melanie I. Stefan
2016 J jnl
The systems biology format converter.
BMC Bioinform.
Nicolas Rodriguez, Jean-Baptiste Pettit, Piero Dalle Pezze, Lu Li, Arnaud Henry, Martijn P. van Iersel, Gaël Jalowicki, Martina Kutmon, Kedar Nath Natarajan, David Tolnay, Melanie I. Stefan, Chris T. A. Evelo, Nicolas Le Novère
2015 J jnl
The Quantitative Methods Boot Camp: Teaching Quantitative Thinking and Computing Skills to Graduate Students in the Life Sciences.
PLoS Comput. Biol.
Melanie I. Stefan, Johanna L. Gutlerner, Richard T. Born, Michael Springer
2014 J jnl
Multi-state Modeling of Biomolecules.
PLoS Comput. Biol.
Melanie I. Stefan, Thomas M. Bartol, Terrence J. Sejnowski, Mary B. Kennedy
2014 J jnl
Ten Simple Rules for Finishing Your PhD.
PLoS Comput. Biol.
Jacopo Marino, Melanie I. Stefan, Sarah Blackford
2013 J jnl
Cooperative Binding.
PLoS Comput. Biol.
Melanie I. Stefan, Nicolas Le Novère
2011 J jnl
Ten Simple Rules for Getting Help from Online Scientific Communities.
PLoS Comput. Biol.
Giovanni Marco Dall'Olio, Jacopo Marino, Michael Schubert, Kevin L. Keys, Melanie I. Stefan, Colin S. Gillespie, Pierre Poulain, Khader Shameer, Robert Sugar, Brandon M. Invergo, Lars Juhl Jensen, Jaume Bertranpetit, Hafid Laayouni
2010 J jnl
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.
BMC Syst. Biol.
Chen Li, Marco Donizelli, Nicolas Rodriguez, Harish Dharuri, Lukas Endler, Vijayalakshmi Chelliah, Lu Li, Enuo He, Arnaud Henry, Melanie I. Stefan, Jacky L. Snoep, Michael Hucka, Nicolas Le Novère, Camille Laibe
2009 J jnl
Computing phenomenologic Adair-Klotz constants from microscopic MWC parameters.
BMC Syst. Biol.
Melanie I. Stefan, Stuart J. Edelstein, Nicolas Le Novère
2007 J jnl
Molecules for memory: modelling CaMKII.
BMC Syst. Biol.
Melanie I. Stefan, Nicolas Le Novère