Mehdi Sadeghi

44 papers B 1Journal 43
YearRankTypeTitle / Venue / Authors
2024 J jnl
Single-cell multi-omics analysis identifies context-specific gene regulatory gates and mechanisms.
Briefings Bioinform.
Seyed Amir Malekpour, Laleh Haghverdi, Mehdi Sadeghi
2023 J jnl
wpLogicNet: logic gate and structure inference in gene regulatory networks.
Bioinform.
Seyed Amir Malekpour, Maryam Shahdoust, Rosa Aghdam, Mehdi Sadeghi
2022 J jnl
A new survival analysis model in adjuvant Tamoxifen-treated breast cancer patients using manifold-based semi-supervised learning.
J. Comput. Sci.
Ramazan Teimouri Yansari, Mitra Mirzarezaee, Mehdi Sadeghi, Babak Nadjar Araabi
2022 J jnl
Determining the adjusted initial treatment dose of warfarin anticoagulant medicine using kernel-based support vector regression.
Comput. Methods Programs Biomed.
Rouhollah Maghsoudi, Mitra Mirzarezaee, Mehdi Sadeghi, Babak Nadjar Araabi
2022 J jnl
Prospects and challenges of cancer systems medicine: from genes to disease networks.
Briefings Bioinform.
Mohammad Reza Karimi, Amir-Hossein Karimi, Shamsozoha Abolmaali, Mehdi Sadeghi, Ulf Schmitz
2020 J jnl
A Network-Based Comparison Between Molecular Apocrine Breast Cancer Tumor and Basal and Luminal Tumors by Joint Graphical Lasso.
IEEE ACM Trans. Comput. Biol. Bioinform.
Maryam S. Daneshpour, Hossein Mahjub, Hamid Pezeshk, Mehdi Sadeghi
2020 J jnl
Inter-protein residue covariation information unravels physically interacting protein dimers.
BMC Bioinform.
Sara Salmanian, Hamid Pezeshk, Mehdi Sadeghi
2020 J jnl
LogicNet: probabilistic continuous logics in reconstructing gene regulatory networks.
BMC Bioinform.
Seyed Amir Malekpour, Amir Reza Alizad-Rahvar, Mehdi Sadeghi
2018 J jnl
Assessing the impact of exact reads on reducing the error rate of read mapping.
BMC Bioinform.
Farzaneh Salari, Fatemeh Zare-Mirakabad, Mehdi Sadeghi, Hassan Rokni-Zadeh
2018 J jnl
Modeling the probability distribution of the bacterial burst size via a game-theoretic approach.
J. Bioinform. Comput. Biol.
Seyed Amir Malekpour, Parsa Pakzad, Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Ruzbeh Tusserkani, Bahram Goliaei, Mehdi Sadeghi
2018 J jnl
Visualization in the integrated SimPhoNy multiscale simulation framework.
Comput. Phys. Commun.
Joan Adler, Sampo Kulju, Jari Hyväluoma, Keijo Mattila, Kit Choi, Ioannis Tziakos, Didrik Pinte, G. A. García, Y. Makushok, V. Makushok, J. Lama, G. Román-Pérez, Adham Hashibon, Mehdi Sadeghi, Nathan Franklin, Amihai Silverman
2017 J jnl
Confident gene activity prediction based on single histone modification H2BK5ac in human cell lines.
BMC Bioinform.
Fereshteh Chitsazian, Mehdi Sadeghi, Elahe Elahi
2017 J jnl
HIV-1-infected T-cells dynamics and prognosis: An evolutionary game model.
Comput. Methods Programs Biomed.
Bahareh Khazaei, Javad Salimi Sartakhti, Mohammad Hossein Manshaei, Quanyan Zhu, Mehdi Sadeghi, Seyed Rasoul Mousavi
2017 J jnl
PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities.
BMC Bioinform.
Seyed Amir Malekpour, Hamid Pezeshk, Mehdi Sadeghi
2016 J jnl
Honey bee-inspired algorithms for SNP haplotype reconstruction problem.
J. Exp. Theor. Artif. Intell.
Maryam Pourkamali Anaraki, Mehdi Sadeghi
2016 J jnl
Seismic vulnerability assessment and risk modelling of telecommunication systems.
Int. J. Crit. Infrastructures
Naghmeh Pakdel-Lahiji, Morteza Bastami, Mehdi Sadeghi
2015 J jnl
Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach.
J. Bioinform. Comput. Biol.
Mohammad-Hadi Foroughmand-Araabi, Bahram Goliaei, Kasra Alishahi, Mehdi Sadeghi, Sama Goliaei
2015 J jnl
Erratum to: Inferring interaction type in gene regulatory networks using co-expression data.
Algorithms Mol. Biol.
Pegah Khosravi, Vahid H. Gazestani, Leila Pirhaji, Brian Law, Mehdi Sadeghi, Gary D. Bader, Bahram Goliaei
2015 J jnl
Increased robustness of early embryogenesis through collective decision-making by key transcription factors.
BMC Syst. Biol.
Ali Sharifi-Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J. Araúzo-Bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi
2015 J jnl
Inferring interaction type in gene regulatory networks using co-expression data.
Algorithms Mol. Biol.
Pegah Khosravi, Vahid H. Gazestani, Leila Pirhaji, Brian Law, Mehdi Sadeghi, Bahram Goliaei, Gary D. Bader
2015 J jnl
Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms.
BMC Bioinform.
Mohieddin Jafari, Mehdi Mirzaie, Mehdi Sadeghi
2014 J jnl
ARYANA: Aligning Reads by Yet Another Approach.
BMC Bioinform.
Milad Gholami, Aryan Arbabi, Ali Sharifi-Zarchi, Hamidreza Chitsaz, Mehdi Sadeghi
2014 J jnl
Efficient fast heuristic algorithms for minimum error correction haplotyping from SNP fragments.
Int. J. Comput. Biol. Drug Des.
Maryam Pourkamali Anaraki, Mehdi Sadeghi
2014 J jnl
Learning by abstraction: Hierarchical classification model using evidential theoretic approach and Bayesian ensemble model.
Neurocomputing
Mahdi Pakdaman Naeini, Behzad Moshiri, Babak Nadjar Araabi, Mehdi Sadeghi
2014 J jnl
Network-based approach reveals Y chromosome influences prostate cancer susceptibility.
Comput. Biol. Medicine
Pegah Khosravi, Vahid H. Gazestani, Yazdan Asgari, Brian Law, Mehdi Sadeghi, Bahram Goliaei
2014 J jnl
Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals.
Biosyst.
Mahdi Heydari, Sayed-Amir Marashi, Ruzbeh Tusserkani, Mehdi Sadeghi
2014 J jnl
Using artificial immunity network for face verification.
Int. Arab J. Inf. Technol.
Mehdi Sadeghi, Keivan Maghooli, Mohammad Shahram Moein
2014 J jnl
Using data fusion for scoring reliability of protein-protein interactions.
J. Bioinform. Comput. Biol.
Alireza Vazifedoost, Maseud Rahgozar, Behzad Moshiri, Mehdi Sadeghi, Hon Nian Chua, See-Kiong Ng, Limsoon Wong
2013 J jnl
Evaluation of Fuzzy Linear Programming Application in Energy Models.
Int. J. Energy Optim. Eng.
Mehdi Sadeghi, Hossein Mirshojaeian Hosseini
2011 J jnl
A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM.
Comput. Biol. Chem.
Kaveh Kavousi, Behzad Moshiri, Mehdi Sadeghi, Babak Nadjar Araabi, Ali Akbar Moosavi-Movahedi
2011 J jnl
Modeling and implementing an agent-based system for prediction of protein relative solvent accessibility.
Expert Syst. Appl.
Alireza Meshkin, Nasser Ghasem-Aghaee, Mehdi Sadeghi
2010 J jnl
A pairwise residue contact area-based mean force potential for discrimination of native protein structure.
BMC Bioinform.
Shahriar Arab, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk, Armita Sheari
2010 J jnl
Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces Cerevisiae.
BMC Syst. Biol.
Mitra Mirzarezaee, Babak Nadjar Araabi, Mehdi Sadeghi
2010 J jnl
Tag SNP selection via a genetic algorithm.
J. Biomed. Informatics
Ghasem Mahdevar, Javad Zahiri, Mehdi Sadeghi, Abbas Nowzari-Dalini, Hayedeh Ahrabian
2009 B conf
F.C.A: Designing a fuzzy clustering algorithm for haplotype assembly.
FUZZ-IEEE
M-Hossein Moeinzadeh, Ehsan Asgarian, Morteza Mohammad Noori, Mehdi Sadeghi, Sara Sharifian-R
2009 J jnl
Global haplotype partitioning for maximal associated SNP pairs.
BMC Bioinform.
Ali Katanforoush, Mehdi Sadeghi, Hamid Pezeshk, Elahe Elahi
2009 J jnl
New scoring schema for finding motifs in DNA Sequences.
BMC Bioinform.
Fatemeh Zare-Mirakabad, Hayedeh Ahrabian, Mehdi Sadeghi, Abbas Nowzari-Dalini, Bahram Goliaei
2009 J jnl
STON: A novel method for protein three-dimensional structure comparison.
Comput. Biol. Medicine
Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi, Amir Massoud Rahimi, Heydar Maboudi Afkham, Shahriar Arab
2008 J jnl
A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins.
BMC Bioinform.
Armita Sheari, Mehdi Kargar, Ali Katanforoush, Shahriar Arab, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Sayed-Amir Marashi
2008 J jnl
Impact of residue accessible surface area on the prediction of protein secondary structures.
BMC Bioinform.
Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk, Sayed-Amir Marashi
2008 J jnl
PROSIGN: A method for protein secondary structure assignment based on three-dimensional coordinates of consecutive C
Comput. Biol. Chem.
Sayed-Rzgar Hosseini, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Mahnaz Habibi
2007 J jnl
A method for protein accessibility prediction based on residue types and conformational states.
Comput. Biol. Chem.
Roghayeh Zarei, Shahriar Arab, Mehdi Sadeghi
2006 J jnl
Impact of RNA structure on the prediction of donor and acceptor splice sites.
BMC Bioinform.
Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi
2006 J jnl
Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks.
Comput. Biol. Chem.
Sayed-Amir Marashi, Hani Goodarzi, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk