Md. Shamsuzzoha Bayzid

34 papers A 2B 1C 2Misc 2Journal 22Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
An alignment-free method for phylogeny estimation using maximum likelihood.
BMC Bioinform.
Tasfia Zahin, Md. Hasin Abrar, Mizanur Rahman Jewel, Tahrina Tasnim, Md. Shamsuzzoha Bayzid, Atif Rahman
2025 J jnl
BioLLMNet: enhancing RNA-interaction prediction with a specialized cross-LLM transformation network.
Briefings Bioinform.
Abrar Rahman Abir, Md Toki Tahmid, Md. Shamsuzzoha Bayzid
2025 — conf
On the Robustness to Gene Tree Rooting (or Lack Thereof) of Triplet-Based Species Tree Estimation Methods.
RECOMB-CG
Tanjeem Azwad Zaman, Rabib Jahin Ibn Momin, Md. Shamsuzzoha Bayzid
2025 — conf
QT-WEAVER: Correcting Quartet Distribution Improves Phylogenomic Analyses Despite Gene Tree Estimation Error.
RECOMB-CG
Navid Bin Hasan, Sohaib, Md. Shamsuzzoha Bayzid
2024 — conf
Gene Tree Parsimony in the Presence of Gene Duplication, Loss, and Incomplete Lineage Sorting.
RECOMB-CG
Prottoy Saha, Md Shamiul Islam, Tasnim Rahman, Adiba Shaira, Kazi Noshin, Rezwana Reaz, Md. Shamsuzzoha Bayzid
2024 J jnl
Pair-EGRET: enhancing the prediction of protein-protein interaction sites through graph attention networks and protein language models.
Bioinform.
Ramisa Alam, Sazan Mahbub, Md. Shamsuzzoha Bayzid
2023 J jnl
BEENE: deep learning-based nonlinear embedding improves batch effect estimation.
Bioinform.
Md Ashiqur Rahman, Abdullah Aman Tutul, Mahfuza Sharmin, Md. Shamsuzzoha Bayzid
2023 J jnl
CD-MAWS: An Alignment-Free Phylogeny Estimation Method Using Cosine Distance on Minimal Absent Word Sets.
IEEE ACM Trans. Comput. Biol. Bioinform.
Naser Anjum, Raian Latif Nabil, Rakibul Islam Rafi, Md. Shamsuzzoha Bayzid, Mohammad Saifur Rahman
2023 J jnl
Inferring Optimal Species Trees in the Presence of Gene Duplication and Loss: Beyond Rooted Gene Trees.
J. Comput. Biol.
Md. Shamsuzzoha Bayzid
2023 J jnl
Quartet Fiduccia-Mattheyses revisited for larger phylogenetic studies.
Bioinform.
Sharmin Akter Mim, Md. Zarif Ul Alam, Rezwana Reaz, Md. Shamsuzzoha Bayzid, Mohammad Saifur Rahman
2022 J jnl
EGRET: edge aggregated graph attention networks and transfer learning improve protein-protein interaction site prediction.
Briefings Bioinform.
Sazan Mahbub, Md. Shamsuzzoha Bayzid
2022 — conf
Fast and Accurate Branch Support Calculation for Distance-Based Phylogenetic Placements.
RECOMB-CG
Navid Bin Hasan, Avijit Biswas, Metin Balaban, Siavash Mirarab, Md. Shamsuzzoha Bayzid
2022 J jnl
Multiobjective Formulation of Multiple Sequence Alignment for Phylogeny Inference.
IEEE Trans. Cybern.
Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Atif Hasan Rahman, Rifat Shahriyar, M. Sohel Rahman
2022 J jnl
PASTA with many application-aware optimization criteria for alignment based phylogeny inference.
Comput. Biol. Chem.
Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Naser Anjum Samudro, Mohammad Saifur Rahman, M. Sohel Rahman
2022 B conf
QT-GILD: Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data.
RECOMB
Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M. Sohel Rahman, Md. Shamsuzzoha Bayzid
2022 J jnl
Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data.
J. Comput. Biol.
Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M. Sohel Rahman, Md. Shamsuzzoha Bayzid
2021 A conf
3D-FFS: Faster 3D object detection with Focused Frustum Search in sensor fusion based networks.
IROS
Aniruddha Ganguly, Tasin Ishmam, Khandker Aftarul Islam, Md Zahidur Rahman, Md. Shamsuzzoha Bayzid
2021 J jnl
3D-FFS: Faster 3D object detection with Focused Frustum Search in sensor fusion based networks.
CoRR
Aniruddha Ganguly, Tasin Ishmam, Khandker Aftarul Islam, Md Zahidur Rahman, Md. Shamsuzzoha Bayzid
2021 J jnl
Biological computation and computational biology: survey, challenges, and discussion.
Artif. Intell. Rev.
Zaineb Chelly Dagdia, Pavel Avdeyev, Md. Shamsuzzoha Bayzid
2021 J jnl
SSG-LUGIA: Single Sequence based Genome Level Unsupervised Genomic Island Prediction Algorithm.
Briefings Bioinform.
Nabil Ibtehaz, Ishtiaque Ahmed, Md. Sabbir Ahmed, M. Sohel Rahman, Rajeev K. Azad, Md. Shamsuzzoha Bayzid
2021 J jnl
wQFM: highly accurate genome-scale species tree estimation from weighted quartets.
Bioinform.
Mahim Mahbub, Zahin Wahab, Rezwana Reaz, Mohammad Saifur Rahman, Md. Shamsuzzoha Bayzid
2020 C conf
A Multi-objective Metaheuristic Approach for Accurate Species Tree Estimation.
BIBE
Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Sakshar Chakravarty, Mohammad Saifur Rahman, M. Sohel Rahman
2020 J jnl
Align-gram : Rethinking the Skip-gram Model for Protein Sequence Analysis.
CoRR
Nabil Ibtehaz, S. M. Shakhawat Hossain Sourav, Md. Shamsuzzoha Bayzid, M. Sohel Rahman
2020 J jnl
SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction.
Bioinform.
Mostofa Rafid Uddin, Sazan Mahbub, Mohammad Saifur Rahman, Md. Shamsuzzoha Bayzid
2019 A conf
A 'phylogeny-aware' multi-objective optimization approach for computing MSA.
GECCO
Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Atif Hasan Rahman, Rifat Shahriyar, M. Sohel Rahman
2018 J jnl
Gene tree parsimony for incomplete gene trees: addressing true biological loss.
Algorithms Mol. Biol.
Md. Shamsuzzoha Bayzid, Tandy J. Warnow
2017 C conf
Gene Tree Parsimony for Incomplete Gene Trees.
WABI
Md. Shamsuzzoha Bayzid, Tandy J. Warnow
2014 J jnl
ASTRAL: genome-scale coalescent-based species tree estimation.
Bioinform.
Siavash Mirarab, Rezwana Reaz, Md. Shamsuzzoha Bayzid, Théo Zimmermann, M. Shel Swenson, Tandy J. Warnow
2013 Misc conf
Inferring Optimal Species Trees Under Gene Duplication and Loss.
Pacific Symposium on Biocomputing
Md. Shamsuzzoha Bayzid, Siavash Mirarab, Tandy J. Warnow
2013 J jnl
Naive binning improves phylogenomic analyses.
Bioinform.
Md. Shamsuzzoha Bayzid, Tandy J. Warnow
2012 J jnl
Estimating Optimal Species Trees from Incomplete Gene Trees Under Deep Coalescence.
J. Comput. Biol.
Md. Shamsuzzoha Bayzid, Tandy J. Warnow
2010 Misc conf
Discovering Pairwise Compatibility Graphs.
COCOON
Muhammad Nur Yanhaona, Md. Shamsuzzoha Bayzid, Md. Saidur Rahman
2010 J jnl
Discovering Pairwise Compatibility Graphs.
Discret. Math. Algorithms Appl.
Muhammad Nur Yanhaona, Md. Shamsuzzoha Bayzid, Md. Saidur Rahman
2008 — conf
A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction.
BMEI (1)
Abdullah Al Mueen, Md. Shamsuzzoha Bayzid, Md. Maksudul Alam, Md. Saidur Rahman