Maxwell W. Libbrecht

21 papers A* 1C 1Journal 14Unranked 4
YearRankTypeTitle / Venue / Authors
2025 — conf
Generalized Attention Flow: Feature Attribution for Transformer Models via Maximum Flow.
ACL (1)
Behrooz Azarkhalili, Maxwell W. Libbrecht
2025 J jnl
Generalized Attention Flow: Feature Attribution for Transformer Models via Maximum Flow.
CoRR
Behrooz Azarkhalili, Maxwell W. Libbrecht
2025 — conf
Variational Graph Auto-encoder for Denoising Single-cell Hi-C Data.
MLCB
Neda Shokraneh Kenari, Maxwell W. Libbrecht
2024 J jnl
VSS-Hi-C: variance-stabilized signals for chromatin contacts.
Bioinform.
Neda Shokraneh Kenari, Faezeh Bayat, Maxwell W. Libbrecht
2023 J jnl
Integrative chromatin domain annotation through graph embedding of Hi-C data.
Bioinform.
Neda Shokraneh, Mariam Arab, Maxwell W. Libbrecht
2022 J jnl
Continuous chromatin state feature annotation of the human epigenome.
Bioinform.
Habib Daneshpajouh, Bowen Chen, Neda Shokraneh, Shohre Masoumi, Kay C. Wiese, Maxwell W. Libbrecht
2022 J jnl
DEEMD: Drug Efficacy Estimation Against SARS-CoV-2 Based on Cell Morphology With Deep Multiple Instance Learning.
IEEE Trans. Medical Imaging
M. Sadegh Saberian, Kathleen P. Moriarty, Andrea D. Olmstead, Christian Hallgrimson, François Jean, Ivan Robert Nabi, Maxwell W. Libbrecht, Ghassan Hamarneh
2022 J jnl
Latent Representation of the Human Pan-Celltype Epigenome Through a Deep Recurrent Neural Network.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kevin B. Dsouza, Adam Y. Li, Vijay K. Bhargava, Maxwell W. Libbrecht
2022 J jnl
SigTools: exploratory visualization for genomic signals.
Bioinform.
Shohre Masoumi, Maxwell W. Libbrecht, Kay C. Wiese
2021 J jnl
DEEMD: Drug Efficacy Estimation against SARS-CoV-2 based on cell Morphology with Deep multiple instance learning.
CoRR
M. Sadegh Saberian, Kathleen P. Moriarty, Andrea D. Olmstead, Ivan Robert Nabi, François Jean, Maxwell W. Libbrecht, Ghassan Hamarneh
2021 J jnl
INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis.
Algorithms Mol. Biol.
Hooman Zabeti, Nick C. Dexter, Amir Hosein Safari, Nafiseh Sedaghat, Maxwell W. Libbrecht, Leonid Chindelevitch
2021 — conf
Predicting drug resistance in
BCB
Amir Hosein Safari, Nafiseh Sedaghat, Hooman Zabeti, Alpha Forna, Leonid Chindelevitch, Maxwell W. Libbrecht
2021 J jnl
Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns.
PLoS Comput. Biol.
Maxwell W. Libbrecht, Rachel C. W. Chan, Michael M. Hoffman
2021 J jnl
Segmentation and genome annotation algorithms.
CoRR
Maxwell W. Libbrecht, Rachel C. W. Chan, Michael M. Hoffman
2021 J jnl
VSS: variance-stabilized signals for sequencing-based genomic signals.
Bioinform.
Faezeh Bayat, Maxwell W. Libbrecht
2020 C conf
An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis.
WABI
Hooman Zabeti, Nick C. Dexter, Amir Hosein Safari, Nafiseh Sedaghat, Maxwell W. Libbrecht, Leonid Chindelevitch
2018 — conf
Choosing Non-redundant Representative Subsets Of Protein Sequence Data Sets Using Submodular Optimization.
BCB
Maxwell W. Libbrecht, Jeffrey A. Bilmes, William Stafford Noble
2018 J jnl
Segway 2.0: Gaussian mixture models and minibatch training.
Bioinform.
Rachel C. W. Chan, Maxwell W. Libbrecht, Eric G. Roberts, Jeffrey A. Bilmes, William Stafford Noble, Michael M. Hoffman
2016 — —
Understanding human genome regulation through entropic graph-based regularization and submodular optimization.
Maxwell W. Libbrecht
2015 A* conf
Entropic Graph-based Posterior Regularization.
ICML
Maxwell W. Libbrecht, Michael M. Hoffman, Jeff A. Bilmes, William Stafford Noble
2014 J jnl
Comparative analysis of metazoan chromatin organization Open.
Nat.
Joshua Wing Kei Ho, Youngsook L. Jung, Tao Liu, Burak Han Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng'en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park