Maxwell Lewis Neal

23 papers Misc 5Journal 13Unranked 5

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	OMEX metadata specification (version 1.2). J. Integr. Bioinform. John H. Gennari, Matthias König, Goksel Misirli, Maxwell Lewis Neal, David P. Nickerson, Dagmar Waltemath
2021	J	`jnl`	libOmexMeta: enabling semantic annotation of models to support FAIR principles. Bioinform. Ciaran M. Welsh, David P. Nickerson, Anand K. Rampadarath, Maxwell Lewis Neal, Herbert M. Sauro, John H. Gennari
2020	J	`jnl`	Open modeling and exchange (OMEX) metadata specification version 1.0. J. Integr. Bioinform. Maxwell Lewis Neal, John H. Gennari, Dagmar Waltemath, David P. Nickerson, Matthias König
2019	J	`jnl`	Harmonizing semantic annotations for computational models in biology. Briefings Bioinform. Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath
2019	J	`jnl`	Model annotation and discovery with the Physiome Model Repository. BMC Bioinform. Dewan M. Sarwar, Reza Kalbasi, John H. Gennari, Brian E. Carlson, Maxwell Lewis Neal, Bernard de Bono, Koray Atalag, Peter J. Hunter, David P. Nickerson
2019	J	`jnl`	SemGen: a tool for semantics-based annotation and composition of biosimulation models. Bioinform. Maxwell Lewis Neal, Christopher T. Thompson, Karam G. Kim, Ryan C. James, Daniel L. Cook, Brian E. Carlson, John H. Gennari
2019	—	`conf`	The Ontology of Physics for Biology - A Companion to Basic Formal Ontology. ICBO Daniel L. Cook, John H. Gennari, Maxwell Lewis Neal
2017	—	`conf`	Extending the Ontology of Physics for Biology with Thermodynamics. ICBO Daniel L. Cook, John H. Gennari, Maxwell Lewis Neal
2016	—	`conf`	Qualitative Causal Analyses of Biosimulation Models. ICBO/BioCreative Maxwell Lewis Neal, John H. Gennari, Daniel L. Cook
2014	J	`jnl`	A C library for retrieving specific reactions from the BioModels database. Bioinform. Maxwell Lewis Neal, Michal Galdzicki, J. T. Gallimore, Herbert M. Sauro
2014	J	`jnl`	A Reappraisal of How to Build Modular, Reusable Models of Biological Systems. PLoS Comput. Biol. Maxwell Lewis Neal, Michael T. Cooling, Lucian P. Smith, Christopher T. Thompson, Herbert M. Sauro, Brian E. Carlson, Daniel L. Cook, John H. Gennari
2013	—	`conf`	An OWL knowledge base for classifying and querying collections of physiological models: A prototype human physiome. ICBO Maxwell Lewis Neal, Daniel L. Cook, John H. Gennari
2013	Misc	`conf`	Innovative Use of Ontologies: Association of Physiological Pathways to Corresponding Computational Models and Disparate Data Types. AMIA Nazanin Tabesh-Saleki, Brian E. Carlson, Christopher T. Thompson, Maxwell Lewis Neal, Daniel L. Cook, Mary Shimoyama
2013	J	`jnl`	JSim, an open-source modeling system for data analysis. F1000Research Erik Butterworth, Bartholomew Jardine, Gary M. Raymond, Maxwell Lewis Neal, James B. Bassingthwaighte
2013	J	`jnl`	Ontology of physics for biology: representing physical dependencies as a basis for biological processes. J. Biomed. Semant. Daniel L. Cook, Maxwell Lewis Neal, Fred L. Bookstein, John H. Gennari
2013	J	`jnl`	Representing physiological processes and their participants with PhysioMaps. J. Biomed. Semant. Daniel L. Cook, Maxwell Lewis Neal, Robert Hoehndorf, Georgios V. Gkoutos, John H. Gennari
2011	—	`conf`	HeartCyc: A Cardiac Cycle Process Ontology Based in the Ontology of Physics for Biology. ICBO Daniel L. Cook, Michal Galdzicki, Maxwell Lewis Neal, José L. V. Mejino Jr., John H. Gennari
2011	J	`jnl`	Multiple ontologies in action: Composite annotations for biosimulation models. J. Biomed. Informatics John H. Gennari, Maxwell Lewis Neal, Michal Galdzicki, Daniel L. Cook
2010	J	`jnl`	Current progress in patient-specific modeling. Briefings Bioinform. Maxwell Lewis Neal, Roy Kerckhoffs
2009	Misc	`conf`	Advances in Semantic Representation for Multiscale Biosimulation: A Case Study in Merging Models. Pacific Symposium on Biocomputing Maxwell Lewis Neal, John H. Gennari, Theo Arts, Daniel L. Cook
2008	Misc	`conf`	Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology. AMIA Daniel L. Cook, José L. V. Mejino Jr., Maxwell Lewis Neal, John H. Gennari
2008	Misc	`conf`	Integration of Multi-Scale Biosimulation Models via Light-Weight Semantics. Pacific Symposium on Biocomputing John H. Gennari, Maxwell Lewis Neal, Brian E. Carlson, Daniel L. Cook
2006	Misc	`conf`	Ontology-Based Representation of Simulation Models of Physiology. AMIA Daniel L. Rubin, David Grossman, Maxwell Lewis Neal, Daniel L. Cook, James B. Bassingthwaighte, Mark A. Musen