Max Kotlyar

14 papers A* 1Journal 10
YearRankTypeTitle / Venue / Authors
2023 J jnl
MirDIP 5.2: tissue context annotation and novel microRNA curation.
Nucleic Acids Res.
Anne-Christin Hauschild, Chiara Pastrello, Gitta Kirana Anindya Ekaputeri, Dylan Bethune-Waddell, Mark Abovsky, Zuhaib Ahmed, Max Kotlyar, Richard Lu, Igor Jurisica
2022 J jnl
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis.
Nucleic Acids Res.
Max Kotlyar, Chiara Pastrello, Zuhaib Ahmed, Justin Chee, Zofia Varyova, Igor Jurisica
2020 — ch.
Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID).
Protein-Protein Interaction Networks
Chiara Pastrello, Max Kotlyar, Igor Jurisica
2020 J jnl
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.
Database J. Biol. Databases Curation
Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras
2020 J jnl
pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species.
Nucleic Acids Res.
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Max Kotlyar, Richard Lu, Christian A. Cumbaa, Proton Rahman, Vinod Chandran, Igor Jurisica
2019 J jnl
IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species.
Nucleic Acids Res.
Max Kotlyar, Chiara Pastrello, Zara Malik, Igor Jurisica
2019 — ch.
Protein-Protein Interaction Databases.
Encyclopedia of Bioinformatics and Computational Biology (1)
Max Kotlyar, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica
2018 A* conf
SDREGION: Fast Spotting of Changing Communities in Biological Networks.
KDD
Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica
2016 J jnl
Integrated interactions database: tissue-specific view of the human and model organism interactomes.
Nucleic Acids Res.
Max Kotlyar, Chiara Pastrello, Nicholas Sheahan, Igor Jurisica
2016 — ch.
Machine Learning for In Silico Modeling of Tumor Growth.
Machine Learning for Health Informatics
Fleur Jeanquartier, Claire Jean-Quartier, Max Kotlyar, Tomás Tokár, Anne-Christin Hauschild, Igor Jurisica, Andreas Holzinger
2015 J jnl
Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data.
PLoS Comput. Biol.
Kristen Fortney, Joshua Griesman, Max Kotlyar, Chiara Pastrello, Marc Angeli, Ming-Sound Tsao, Igor Jurisica
2013 J jnl
NetwoRx: connecting drugs to networks and phenotypes in
Nucleic Acids Res.
Kristen Fortney, Wing Xie, Max Kotlyar, Joshua Griesman, Yulia Kotseruba, Igor Jurisica
2011 J jnl
NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs.
Internet Math.
Amira Djebbari, Muhammad Ali, David Otasek, Max Kotlyar, Kristen Fortney, Serene Wong, Anthony Hrvojic, Igor Jurisica
2006 J jnl
Predicting Protein-Protein Interactions by Association Mining.
Inf. Syst. Frontiers
Max Kotlyar, Igor Jurisica