Max A. Alekseyev

75 papers A* 1A 1B 4C 4Misc 1Journal 47Unranked 16
YearRankTypeTitle / Venue / Authors
2026 J jnl
Computing bounded solutions to linear Diophantine equations with the sum of divisors.
CoRR
Max A. Alekseyev
2026 J jnl
Maximizing the number of integer pairs summing to powers of 2 via graph labeling and solving restricted systems of linear (in)equations.
J. Comput. Syst. Sci.
Max A. Alekseyev
2024 B conf
A Family of Permutationally Invariant Quantum Codes.
ISIT
Arda Aydin, Max A. Alekseyev, Alexander Barg
2024 J jnl
A family of permutationally invariant quantum codes.
Quantum
Arda Aydin, Max A. Alekseyev, Alexander Barg
2024 J jnl
Enumeration of Payphone Permutations.
Am. Math. Mon.
Max A. Alekseyev
2024 C conf
On Computing Sets of Integers with Maximum Number of Pairs Summing to Powers of 2.
IWOCA
Max A. Alekseyev
2023 J jnl
A family of permutationally invariant quantum codes.
CoRR
Arda Aydin, Max A. Alekseyev, Alexander Barg
2023 J jnl
On computing sets of integers with maximum number of pairs summing to powers of 2.
CoRR
Max A. Alekseyev
2022 J jnl
Orienting Ordered Scaffolds: Complexity and Algorithms.
SN Comput. Sci.
Sergey Aganezov, Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
2020 J jnl
A unified ILP framework for core ancestral genome reconstruction problems.
Bioinform.
Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
2020 J jnl
Computing solutions to the congruence 1n+2n+⋯+nn≡p(modn).
Discret. Appl. Math.
Max A. Alekseyev, José María Grau, Antonio M. Oller-Marcén
2020 — conf
Linearization of Ancestral Genomes with Duplicated Genes.
BCB
Pavel Avdeyev, Max A. Alekseyev
2020 — ed.
Mathematical and Computational Oncology - Second International Symposium, ISMCO 2020, San Diego, CA, USA, October 8-10, 2020, Proceedings
ISMCO
George Bebis, Max A. Alekseyev, Heyrim Cho, Jana Gevertz, María Rodríguez Martínez
2019 — conf
A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems.
AlCoB
Pavel Avdeyev, Maria Atamanova, Max A. Alekseyev
2019 J jnl
Orienting Ordered Scaffolds: Complexity and Algorithms.
CoRR
Sergey Aganezov, Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
2018 — conf
A Rapid Exact Solution for the Guided Genome Halving Problem.
BCB
Anton Nekhai, Maria Atamanova, Pavel Avdeyev, Max A. Alekseyev
2018 J jnl
Combinatorial Scoring of Phylogenetic Trees and Networks Based on Homoplasy-Free Characters.
J. Comput. Biol.
Nikita Alexeev, Max A. Alekseyev
2018 — conf
Implicit Transpositions in DCJ Scenarios.
BCB
Pavel Avdeyev, Shuai Jiang, Max A. Alekseyev
2018 J jnl
On partitions into squares of distinct integers whose reciprocals sum to 1.
CoRR
Max A. Alekseyev
2017 — conf
A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems Under DCJ.
RECOMB-CG
Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
2017 J jnl
CAMSA: a tool for comparative analysis and merging of scaffold assemblies.
BMC Bioinform.
Sergey Aganezov Jr., Max A. Alekseyev
2017 J jnl
Generalized Hultman Numbers and Cycle Structures of Breakpoint Graphs.
J. Comput. Biol.
Nikita Alexeev, Anna Pologova, Max A. Alekseyev
2017 — conf
On problem of orienting ordered scaffolds.
ICCABS
Sergey Aganezov Jr., Max A. Alekseyev
2017 — conf
Orientation of Ordered Scaffolds.
RECOMB-CG
Sergey Aganezov Jr., Max A. Alekseyev
2016 — conf
CAMSA: A tool for comparative analysis and merging of scaffold assemblies.
ICCABS
Sergey Aganezov Jr., Max A. Alekseyev
2016 Misc conf
Combinatorial Scoring of Phylogenetic Networks.
COCOON
Nikita Alexeev, Max A. Alekseyev
2016 J jnl
Combinatorial Scoring of Phylogenetic Networks.
CoRR
Nikita Alexeev, Max A. Alekseyev
2016 J jnl
Comparative genomics meets topology: a novel view on genome median and halving problems.
BMC Bioinform.
Nikita Alexeev, Pavel Avdeyev, Max A. Alekseyev
2016 J jnl
Computing the Inverses, their Power Sums, and Extrema for Euler's Totient and Other Multiplicative Functions.
J. Integer Seq.
Max A. Alekseyev
2016 J jnl
Making Walks Count: From Silent Circles to Hamiltonian Cycles.
CoRR
Max A. Alekseyev, Gerard P. Michon
2016 — conf
Multi-genome Scaffold Co-assembly Based on the Analysis of Gene Orders and Genomic Repeats.
ISBRA
Sergey Aganezov Jr., Max A. Alekseyev
2016 J jnl
Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss.
J. Comput. Biol.
Pavel Avdeyev, Shuai Jiang, Sergey Aganezov Jr., Fei Hu, Max A. Alekseyev
2016 J jnl
Transcriptome sequencing based annotation and homologous evidence based scaffolding of
BMC Genom.
Yu-Chen Liu, Sheng-Da Hsu, Chih-Hung Chou, Wei-Yun Huang, Yu-Hung Chen, Chia-Yu Liu, Guan-Jay Lyu, Shao-Zhen Huang, Sergey Aganezov Jr., Max A. Alekseyev, Chung-Der Hsiao, Hsien-Da Huang
2016 C conf
Weighted de Bruijn Graphs for the Menage Problem and Its Generalizations.
IWOCA
Max A. Alekseyev
2015 — conf
A Computational Method for the Rate Estimation of Evolutionary Transpositions.
IWBBIO (1)
Nikita Alexeev, Rustem Aidagulov, Max A. Alekseyev
2015 — conf
Estimation of the true evolutionary distance under the fragile breakage model.
ICCABS
Nikita Alexeev, Max A. Alekseyev
2015 — conf
Generalized Hultman Numbers and the Distribution of Multi-break Distances.
AlCoB
Nikita Alexeev, Anna Pologova, Max A. Alekseyev
2015 — conf
Implicit Transpositions in Shortest DCJ Scenarios.
AlCoB
Shuai Jiang, Max A. Alekseyev
2015 J jnl
On the Minimal Teaching Sets of Two-Dimensional Threshold Functions.
SIAM J. Discret. Math.
Max A. Alekseyev, Marina G. Basova, Nikolai Yu. Zolotykh
2015 J jnl
Scaffold assembly based on genome rearrangement analysis.
Comput. Biol. Chem.
Sergey Aganezov Jr., Nadia Sitdykova, Max A. Alekseyev
2015 J jnl
Weighted de Bruijn Graphs for the Menage Problem and Its Generalizations.
CoRR
Max A. Alekseyev
2014 J jnl
Computing the (number of) inverses of Euler's totient and other multiplicative functions.
CoRR
Max A. Alekseyev
2014 C conf
Linearization of Median Genomes under DCJ.
WABI
Shuai Jiang, Max A. Alekseyev
2014 J jnl
On Integral Points on Biquadratic Curves and Near-Multiples of Squares in Lucas Sequences.
J. Integer Seq.
Max A. Alekseyev, Szabolcs Tengely
2013 B conf
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads.
RECOMB
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2013 J jnl
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products.
J. Comput. Biol.
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2013 J jnl
BayesHammer: Bayesian clustering for error correction in single-cell sequencing.
BMC Genom.
Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev
2013 J jnl
On integral points on biquadratic curves and near multiples of squares in Lucas sequences.
CoRR
Max A. Alekseyev
2013 J jnl
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly.
J. Comput. Biol.
Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
2013 J jnl
Solving the Tower of Hanoi with Random Moves
CoRR
Max A. Alekseyev, Toby Berger
2013 J jnl
The average cardinality of the minimal teaching set of a threshold function on a two-dimensional rectangular grid.
CoRR
Max A. Alekseyev, Marina G. Basova, Nikolai Yu. Zolotykh
2012 J jnl
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
CoRR
Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev
2012 J jnl
On pairwise distances and median score of three genomes under DCJ
CoRR
Sergey Aganezov Jr., Max A. Alekseyev
2012 J jnl
On pairwise distances and median score of three genomes under DCJ.
BMC Bioinform.
Sergey Aganezov Jr., Max A. Alekseyev
2012 B conf
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly.
RECOMB
Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
2012 J jnl
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing.
J. Comput. Biol.
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2011 J jnl
On the Intersections of Fibonacci, Pell, and Lucas Numbers.
Integers
Max A. Alekseyev
2011 B conf
Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion of Transpositions.
RECOMB
Shuai Jiang, Max A. Alekseyev
2010 J jnl
Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications.
Commun. Inf. Syst.
Max A. Alekseyev, Qian Peng, Pavel A. Pevzner, Glenn Tesler
2010 — conf
Limited Lifespan of Fragile Regions in Mammalian Evolution.
RECOMB-CG
Max A. Alekseyev, Pavel A. Pevzner
2010 J jnl
On the Number of Two-Dimensional Threshold Functions.
SIAM J. Discret. Math.
Max A. Alekseyev
2010 J jnl
On the intersections of Fibonacci, Pell, and Lucas numbers.
CoRR
Max A. Alekseyev
2010 J jnl
Weighted genomic distance can hardly impose a bound on the proportion of transpositions
CoRR
Shuai Jiang, Max A. Alekseyev
2009 J jnl
Counting Permutations with Two Displacement Values: 11281 [2007, 259].
Am. Math. Mon.
Max A. Alekseyev, John Henry Steelman
2009 C conf
Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes.
WABI
Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner
2008 J jnl
Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes.
J. Comput. Biol.
Max A. Alekseyev
2008 J jnl
Multi-break rearrangements and chromosomal evolution.
Theor. Comput. Sci.
Max A. Alekseyev, Pavel A. Pevzner
2007 J jnl
Are There Rearrangement Hotspots in the Human Genome?
PLoS Comput. Biol.
Max A. Alekseyev, Pavel A. Pevzner
2007 J jnl
Colored de Bruijn Graphs and the Genome Halving Problem.
IEEE ACM Trans. Comput. Biol. Bioinform.
Max A. Alekseyev, Pavel A. Pevzner
2007 — conf
Multi-break Rearrangements: From Circular to Linear Genomes.
RECOMB-CG
Max A. Alekseyev
2007 J jnl
Problem 11281.
Am. Math. Mon.
Max A. Alekseyev, Emeric Deutsch
2007 J jnl
Whole Genome Duplications and Contracted Breakpoint Graphs.
SIAM J. Comput.
Max A. Alekseyev, Pavel A. Pevzner
2007 A* conf
Whole genome duplications, multi-break rearrangements, and genome halving problem.
SODA
Max A. Alekseyev, Pavel A. Pevzner
2004 — conf
Genome Halving Problem Revisited.
FSTTCS
Max A. Alekseyev, Pavel A. Pevzner
2002 A conf
Splicing graphs and EST assembly problem.
ISMB
Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner