Mauricio Reyes

167 papers A* 2B 3Journal 74Unranked 74

Year	Rank	Type	Title / Venue / Authors
2026	—	`ed.`	Interpretability of Machine Intelligence in Medical Image Computing - 8th International Workshop, iMIMIC 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 27, 2025, Proceedings iMIMIC@MICCAI Mauricio Reyes, Pedro Henriques Abreu, Jaime S. Cardoso
2026	A*	`conf`	VALIANT: Prompt Instability for Active Learning in Black-Box Medical Imaging. AAAI Dwarikanath Mahapatra, Behzad Bozorgtabar, Sudipta Roy, Imran Razzak, Mauricio Reyes
2025	J	`jnl`	AUDIT: An open-source Python library for AI model evaluation with use cases in MRI brain tumor segmentation. Comput. Methods Programs Biomed. Carlos Aumente-Maestro, Michael Müller, Beatriz Remeseiro, Jorge Díez, Mauricio Reyes
2025	J	`jnl`	Corrections to "Multi-Label Generalized Zero Shot Chest X-Ray Classification By Combining Image-Text Information With Feature Disentanglement". IEEE Trans. Medical Imaging Dwarikanath Mahapatra, Antonio Jimeno-Yepes, Behzad Bozorgtabar, Sudipta Roy, Zongyuan Ge, Mauricio Reyes
2025	—	`conf`	DeViDe: Faceted Medical Knowledge to Enhance Vision Foundation Model Pretraining for Radiology. BIBM Haozhe Luo, Ziyu Zhou, Ming Hou, Corentin Royer, Mauricio Reyes, Anjany Sekuboyina, Bjoern Menze
2025	J	`jnl`	From Claims to Evidence: A Unified Framework and Critical Analysis of CNN vs. Transformer vs. Mamba in Medical Image Segmentation. CoRR Pooya Mohammadi Kazaj, Giovanni Baj, Yazdan Salimi, Anselm W. Stark, Waldo Valenzuela, George CM. Siontis, Habib Zaidi, Mauricio Reyes, Christoph Graeni, Isaac Shiri
2025	—	`conf`	Hybrid Explanation-Guided Learning for Transformer-Based Chest X-Ray Diagnosis. iMIMIC@MICCAI Shelley Zixin Shu, Haozhe Luo, Alexander Poellinger, Mauricio Reyes
2025	J	`jnl`	Hybrid Explanation-Guided Learning for Transformer-Based Chest X-Ray Diagnosis. CoRR Shelley Zixin Shu, Haozhe Luo, Alexander Poellinger, Mauricio Reyes
2025	—	`conf`	In the Picture: Medical Imaging Datasets, Artifacts, and their Living Review. FAccT Amelia Jiménez-Sánchez, Natalia Rozalia Avlona, Sarah de Boer, Víctor M. Campello, Aasa Feragen, Enzo Ferrante, Melanie Ganz, Judy Wawira Gichoya, Camila González, Steff Groefsema, Alessa Hering, Adam Hulman, Leo Joskowicz, Dovile Juodelyte, Melih Kandemir, Thijs Kooi, Jorge del Pozo Lérida, Livie Yumeng Li, André G. C. Pacheco, Tim Rädsch, Mauricio Reyes, Théo Sourget, Bram van Ginneken, David Wen, Nina Weng, Jack Junchi Xu, Hubert Dariusz Zajac, Maria A. Zuluaga, Veronika Cheplygina
2025	J	`jnl`	In the Picture: Medical Imaging Datasets, Artifacts, and their Living Review. CoRR Amelia Jiménez-Sánchez, Natalia Rozalia Avlona, Sarah de Boer, Víctor M. Campello, Aasa Feragen, Enzo Ferrante, Melanie Ganz, Judy Wawira Gichoya, Camila González, Steff Groefsema, Alessa Hering, Adam Hulman, Leo Joskowicz, Dovile Juodelyte, Melih Kandemir, Thijs Kooi, Jorge del Pozo Lérida, Livie Yumeng Li, André G. C. Pacheco, Tim Rädsch, Mauricio Reyes, Théo Sourget, Bram van Ginneken, David Wen, Nina Weng, Jack Junchi Xu, Hubert Dariusz Zajac, Maria A. Zuluaga, Veronika Cheplygina
2025	—	`ed.`	Medical Image Computing and Computer Assisted Intervention - MICCAI 2024 Workshops - ISIC 2024, iMIMIC 2024, EARTH 2024, DeCaF 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 6-10, 2024, Proceedings ISIC/iMIMIC/EARTH/DeCaF@MICCAI M. Emre Celebi, Mauricio Reyes, Zhen Chen, Xiaoxiao Li
2025	J	`jnl`	Multi-Label Generalized Zero Shot Chest X-Ray Classification by Combining Image-Text Information With Feature Disentanglement. IEEE Trans. Medical Imaging Dwarikanath Mahapatra, Antonio Jimeno-Yepes, Behzad Bozorgtabar, Sudipta Roy, Zongyuan Ge, Mauricio Reyes
2025	—	`conf`	On the Interplay of Human-AI Alignment, Fairness, and Performance Trade-Offs in Medical Imaging. MICCAI (14) Haozhe Luo, Ziyu Zhou, Shelley Zixin Shu, Aurélie Pahud de Mortanges, Robert Berke, Mauricio Reyes
2025	J	`jnl`	On the Interplay of Human-AI Alignment,Fairness, and Performance Trade-offs in Medical Imaging. CoRR Haozhe Luo, Ziyu Zhou, Shelley Zixin Shu, Aurélie Pahud de Mortanges, Robert Berke, Mauricio Reyes
2025	J	`jnl`	ROXSI: Robust Cross-Sequence Semantic Interaction for Brain Tumor Segmentation on Multi-Sequence MR Images. IEEE J. Biomed. Health Informatics Zhuo Kuang, Zengqiang Yan, Aly Abayazeed, Franca Wagner, Li Yu, Mauricio Reyes
2025	J	`jnl`	The added value for MRI radiomics and deep-learning for glioblastoma prognostication compared to clinical and molecular information. CoRR Daniel Abler, O. Pusterla, A. Joye-Kühnis, Nicolaus Andratschke, Meritxell Bach, A. Bink, S. M. Christ, Patric Hagmann, B. Pouymayou, E. Pravatà, Piotr Radojewski, Mauricio Reyes, L. Ruinelli, Roger Schaer, Bram Stieltjes, G. Treglia, Waldo Valenzuela, Roland Wiest, S. Zoergiebel, Matthias Guckenberger, Stephanie Tanadini-Lang, Adrien Depeursinge
2025	J	`jnl`	The impact of U-Net architecture choices and skip connections on the robustness of segmentation across texture variations. Comput. Biol. Medicine Amith Kamath, Jonas Willmann, Nicolaus Andratschke, Mauricio Reyes
2025	J	`jnl`	XBench: A Comprehensive Benchmark for Visual-Language Explanations in Chest Radiography. CoRR Haozhe Luo, Shelley Zixin Shu, Ziyu Zhou, Sebastian Otalora, Mauricio Reyes
2024	J	`jnl`	A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge. CoRR Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew, Alexandre Hutton, Roland Wiest, Johannes Kaesmacher, Uta Hanning, Arsany Hakim, Richard Zubal, Waldo Valenzuela, David Robben, Diana Maria Sima, Vincenzo Anania, Arne Brys, James A. Meakin, Anne Mickan, Gabriel Broocks, Christian Heitkamp, Shengbo Gao, Kongming Liang, Ziji Zhang, Md Mahfuzur Rahman Siddiquee, Andriy Myronenko, Pooya Ashtari, Sabine Van Huffel, Hyun-su Jeong, Chiho Yoon, Chulhong Kim, Jiayu Huo, Sébastien Ourselin, Rachel Sparks, Albert Clèrigues, Arnau Oliver, Xavier Lladó, Liam F. Chalcroft, Ioannis Pappas, Jeroen Bertels, Ewout Heylen, Juliette Moreau, Nima Hatami, Carole Frindel, Abdul Qayyum, Moona Mazher, Domenec Puig, Shao-Chieh Lin, Chun-Jung Juan, Tianxi Hu, Lyndon Boone, Maged Goubran, Yi-Jui Liu, Susanne Wegener, Florian Kofler, Ivan Ezhov, Suprosanna Shit, Moritz Roman Hernandez Petzsche, Bjoern H. Menze, Jan S. Kirschke, Benedikt Wiestler
2024	J	`jnl`	ALFREDO: Active Learning with FeatuRe disEntangelement and DOmain adaptation for medical image classification. Medical Image Anal. Dwarikanath Mahapatra, Ruwan B. Tennakoon, Yasmeen M. George, Sudipta Roy, Behzad Bozorgtabar, Zongyuan Ge, Mauricio Reyes
2024	—	`conf`	AutoDoseRank: Automated Dosimetry-Informed Segmentation Ranking for Radiotherapy. CaPTion@MICCAI Zahira Mercado, Amith Kamath, Robert Poel, Jonas Willmann, Ekin Ermis, Elena Riggenbach, Lucas Mose, Nicolaus Andratschke, Mauricio Reyes
2024	A*	`conf`	Combining Graph Transformers Based Multi-Label Active Learning and Informative Data Augmentation for Chest Xray Classification. AAAI Dwarikanath Mahapatra, Behzad Bozorgtabar, Zongyuan Ge, Mauricio Reyes, Jean-Philippe Thiran
2024	—	`conf`	Comparing the Performance of Radiation Oncologists versus a Deep Learning Dose Predictor to Estimate Dosimetric Impact of Segmentation Variations for Radiotherapy. MIDL Amith Kamath, Zahira Maur, Robert Poel, Jonas Willmann, Ekin Ermis, Elena Riggenbach, Nicolaus Andratschke, Mauricio Reyes
2024	—	`conf`	DWARF: Disease-Weighted Network for Attention Map Refinement. ISIC/iMIMIC/EARTH/DeCaF@MICCAI Haozhe Luo, Aurélie Pahud de Mortanges, Oana Inel, Mauricio Reyes
2024	J	`jnl`	DWARF: Disease-weighted network for attention map refinement. CoRR Haozhe Luo, Aurélie Pahud de Mortanges, Oana Inel, Abraham Bernstein, Mauricio Reyes
2024	J	`jnl`	GANDALF: Graph-based transformer and Data Augmentation Active Learning Framework with interpretable features for multi-label chest Xray classification. Medical Image Anal. Dwarikanath Mahapatra, Behzad Bozorgtabar, Zongyuan Ge, Mauricio Reyes
2024	—	`conf`	INFORMER- Interpretability Founded Monitoring of Medical Image Deep Learning Models. UNSURE@MICCAI Shelley Zixin Shu, Aurélie Pahud de Mortanges, Alexander Poellinger, Dwarikanath Mahapatra, Mauricio Reyes
2024	J	`jnl`	ISLES 2024: The first longitudinal multimodal multi-center real-world dataset in (sub-)acute stroke. CoRR Evamaria Olga Riedel, Ezequiel de la Rosa, The Anh Baran, Moritz Roman Hernandez Petzsche, Hakim Baazaoui, Kaiyuan Yang, David Robben, Joaquin Oscar Seia, Roland Wiest, Mauricio Reyes, Ruisheng Su, Claus Zimmer, Tobias Boeckh-Behrens, Maria Berndt, Bjoern H. Menze, Benedikt Wiestler, Susanne Wegener, Jan S. Kirschke
2024	J	`jnl`	ISLES'24: Improving final infarct prediction in ischemic stroke using multimodal imaging and clinical data. CoRR Ezequiel de la Rosa, Ruisheng Su, Mauricio Reyes, Roland Wiest, Evamaria Olga Riedel, Florian Kofler, Kaiyuan Yang, Hakim Baazaoui, David Robben, Susanne Wegener, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze
2024	J	`jnl`	Orchestrating explainable artificial intelligence for multimodal and longitudinal data in medical imaging. npj Digit. Medicine Aurélie Pahud de Mortanges, Haozhe Luo, Shelley Zixin Shu, Amith Kamath, Yannick Suter, Mohamed Shelan, Alexander Poellinger, Mauricio Reyes
2024	J	`jnl`	Prior knowledge-guided vision-transformer-based unsupervised domain adaptation for intubation prediction in lung disease at one week. Comput. Medical Imaging Graph. Junlin Yang, John Anderson Garcia Henao, Nicha C. Dvornek, Jianchun He, Danielle V. Bower, Arno Depotter, Herkus Bajercius, Aurélie Pahud de Mortanges, Chenyu You, Christopher Gange, Roberta Eufrasia Ledda, Mario Silva, Charles S. Dela Cruz, Wolf Hautz, Harald M. Bonel, Mauricio Reyes, Lawrence H. Staib, Alexander Poellinger, James S. Duncan
2024	J	`jnl`	SaRF: Saliency regularized feature learning improves MRI sequence classification. Comput. Methods Programs Biomed. Suhang You, Roland Wiest, Mauricio Reyes
2023	—	`conf`	ASTRA: Atomic Surface Transformations for Radiotherapy Quality Assurance. EMBC Amith Kamath, Robert Poel, Jonas Willmann, Ekin Ermis, Nicolaus Andratschke, Mauricio Reyes
2023	—	`conf`	Class Specific Feature Disentanglement and Text Embeddings for Multi-label Generalized Zero Shot CXR Classification. MICCAI (2) Dwarikanath Mahapatra, Antonio José Jimeno-Yepes, Shiba Kuanar, Sudipta Roy, Behzad Bozorgtabar, Mauricio Reyes, Zongyuan Ge
2023	—	`conf`	Do We Really Need that Skip-Connection? Understanding Its Interplay with Task Complexity. MICCAI (4) Amith Kamath, Jonas Willmann, Nicolaus Andratschke, Mauricio Reyes
2023	—	`conf`	Dose Guidance for Radiotherapy-Oriented Deep Learning Segmentation. MICCAI (9) Elias Rüfenacht, Robert Poel, Amith Kamath, Ekin Ermis, Stefan Scheib, Michael K. Fix, Mauricio Reyes
2023	J	`jnl`	Graph Node Based Interpretability Guided Sample Selection for Active Learning. IEEE Trans. Medical Imaging Dwarikanath Mahapatra, Alexander Poellinger, Mauricio Reyes
2023	—	`conf`	How Sensitive Are Deep Learning Based Radiotherapy Dose Prediction Models To Variability In Organs At Risk Segmentation? ISBI Amith Kamath, Robert Poel, Jonas Willmann, Nicolaus Andratschke, Mauricio Reyes
2023	—	`ed.`	Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops - MTSAIL 2023, LEAF 2023, AI4Treat 2023, MMMI 2023, REMIA 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8-12, 2023, Proceedings MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI Jonghye Woo, Alessa Hering, Wilson Silva, Xiang Li, Huazhu Fu, Xiaofeng Liu, Fangxu Xing, Sanjay Purushotham, Tejas Sudharshan Mathai, Pritam Mukherjee, Max De Grauw, Regina Beets-Tan, Valentina Corbetta, Elmar Kotter, Mauricio Reyes, Christian F. Baumgartner, Quanzheng Li, Richard M. Leahy, Bin Dong, Hao Chen, Yuankai Huo, Jinglei Lv, Xinxing Xu, Xiaomeng Li, Dwarikanath Mahapatra, Li Cheng, Caroline Petitjean, Benoît Presles
2023	J	`jnl`	PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion. Comput. Methods Programs Biomed. Elias Rüfenacht, Amith Kamath, Yannick Suter, Robert Poel, Ekin Ermis, Stefan Scheib, Mauricio Reyes
2023	—	`conf`	SaGTTA: Saliency Guided Test Time Augmentation for Medical Image Segmentation Across Vendor Domain Shift. ISBI Suhang You, Devavrat Tomar, Behzad Bozorgtabar, Mauricio Reyes
2023	—	`conf`	Towards Radiomics-Based Automated Disease Progression Assessment for Glioblastoma Patients. BrainLes/SWITCH@MICCAI Yannick Suter, Flurina Schuhmacher, Ekin Ermis, Urspeter Knecht, Philippe Schucht, Roland Wiest, Mauricio Reyes
2023	J	`jnl`	Understanding metric-related pitfalls in image analysis validation. CoRR Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein
2022	J	`jnl`	Dual-stream pyramid registration network. Medical Image Anal. Miao Kang, Xiaojun Hu, Weilin Huang, Matthew R. Scott, Mauricio Reyes
2022	J	`jnl`	ISLES 2022: A multi-center magnetic resonance imaging stroke lesion segmentation dataset. CoRR Moritz Roman Hernandez Petzsche, Ezequiel de la Rosa, Uta Hanning, Roland Wiest, Waldo Enrique Valenzuela Pinilla, Mauricio Reyes, Maria Inês Meyer, Sook-Lei Liew, Florian Kofler, Ivan Ezhov, David Robben, Alexandre Hutton, Tassilo Friedrich, Teresa Zarth, Johannes Bürkle, The Anh Baran, Bjoern H. Menze, Gabriel Broocks, Lukas Meyer, Claus Zimmer, Tobias Boeckh-Behrens, Maria Berndt, Benno Ikenberg, Benedikt Wiestler, Jan S. Kirschke
2022	—	`ed.`	Interpretability of Machine Intelligence in Medical Image Computing - 5th International Workshop, iMIMIC 2022, Held in Conjunction with MICCAI 2022, Singapore, Singapore, September 22, 2022, Proceedings iMIMIC@MICCAI Mauricio Reyes, Pedro Henriques Abreu, Jaime S. Cardoso
2022	J	`jnl`	Interpretability-Guided Inductive Bias For Deep Learning Based Medical Image. Medical Image Anal. Dwarikanath Mahapatra, Alexander Poellinger, Mauricio Reyes
2022	—	`conf`	Medical Image Super Resolution by Preserving Interpretable and Disentangled Features. ECCV Workshops (7) Dwarikanath Mahapatra, Behzad Bozorgtabar, Mauricio Reyes
2022	J	`jnl`	Metrics reloaded: Pitfalls and recommendations for image analysis validation. CoRR Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger
2022	—	`conf`	Multi-label Attention Map Assisted Deep Feature Learning for Medical Image Classification. ECCV Workshops (7) Dwarikanath Mahapatra, Mauricio Reyes
2022	—	`conf`	Reliability of Quantification Estimates in MR Spectroscopy: CNNs vs Traditional Model Fitting. MICCAI (8) Rudy Rizzo, Martyna Dziadosz, Sreenath P. Kyathanahally, Mauricio Reyes, Roland Kreis
2022	J	`jnl`	Self-Supervised Generalized Zero Shot Learning for Medical Image Classification Using Novel Interpretable Saliency Maps. IEEE Trans. Medical Imaging Dwarikanath Mahapatra, Zongyuan Ge, Mauricio Reyes
2021	J	`jnl`	Analyzing magnetic resonance imaging data from glioma patients using deep learning. Comput. Medical Imaging Graph. Bjoern H. Menze, Fabian Isensee, Roland Wiest, Benedikt Wiestler, Klaus H. Maier-Hein, Mauricio Reyes, Spyridon Bakas
2021	J	`jnl`	Combining unsupervised and supervised learning for predicting the final stroke lesion. CoRR Adriano Pinto, Sérgio Pereira, Raphael Meier, Roland Wiest, Victor Alves, Mauricio Reyes, Carlos A. Silva
2021	J	`jnl`	Combining unsupervised and supervised learning for predicting the final stroke lesion. Medical Image Anal. Adriano Pinto, Sérgio Pereira, Raphael Meier, Roland Wiest, Victor Alves, Mauricio Reyes, Carlos A. Silva
2021	J	`jnl`	Common Limitations of Image Processing Metrics: A Picture Story. CoRR Annika Reinke, Matthias Eisenmann, Minu Dietlinde Tizabi, Carole H. Sudre, Tim Rädsch, Michela Antonelli, Tal Arbel, Spyridon Bakas, M. Jorge Cardoso, Veronika Cheplygina, Keyvan Farahani, Ben Glocker, Doreen Heckmann-Nötzel, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Jens Kleesiek, Tahsin M. Kurç, Michal Kozubek, Bennett A. Landman, Geert Litjens, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Jens Petersen, Mauricio Reyes, Nicola Rieke, Bram Stieltjes, Ronald M. Summers, Sotirios A. Tsaftaris, Bram van Ginneken, Annette Kopp-Schneider, Paul Jäger, Lena Maier-Hein
2021	—	`conf`	Comparison of MR Preprocessing Strategies and Sequences for Radiomics-Based MGMT Prediction. BrainLes@MICCAI (2) Daniel Abler, Vincent Andrearczyk, Valentin Oreiller, Javier Barranco Garcia, Diem Vuong, Stephanie Tanadini-Lang, Matthias Guckenberger, Mauricio Reyes, Adrien Depeursinge
2021	J	`jnl`	Deep Learning-based Type Identification of Volumetric MRI Sequences. CoRR Jean Pablo Vieira de Mello, Thiago M. Paixão, Rodrigo Ferreira Berriel, Mauricio Reyes, Claudine Badue, Alberto F. De Souza, Thiago Oliveira-Santos
2021	—	`ed.`	Interpretability of Machine Intelligence in Medical Image Computing, and Topological Data Analysis and Its Applications for Medical Data - 4th International Workshop, iMIMIC 2021, and 1st International Workshop, TDA4MedicalData 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings iMIMIC/TDA4MedicalData@MICCAI Mauricio Reyes, Pedro Henriques Abreu, Jaime S. Cardoso, Mustafa Hajij, Ghada Zamzmi, Rahul Paul, Lokendra Thakur
2021	J	`jnl`	Interpretability-Driven Sample Selection Using Self Supervised Learning for Disease Classification and Segmentation. IEEE Trans. Medical Imaging Dwarikanath Mahapatra, Alexander Pollinger, Ling Shao, Mauricio Reyes
2021	J	`jnl`	Prediction of Stroke Lesion at 90-Day Follow-Up by Fusing Raw DSC-MRI With Parametric Maps Using Deep Learning. IEEE Access Adriano Pinto, Joana Amorim, Arsany Hakim, Victor Alves, Mauricio Reyes, Carlos A. Silva
2021	J	`jnl`	The predictive value of segmentation metrics on dosimetry in organs at risk of the brain. Medical Image Anal. Robert Poel, Elias Rüfenacht, Evelyn Hermann, Stefan Scheib, Peter Manser, Daniel M. Aebersold, Mauricio Reyes
2021	J	`jnl`	pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis. Comput. Methods Programs Biomed. Alain Jungo, Olivier Scheidegger, Mauricio Reyes, Fabian Balsiger
2020	J	`jnl`	Brain SegNet: 3D local refinement network for brain lesion segmentation. BMC Medical Imaging Xiaojun Hu, Weijian Luo, Jiliang Hu, Sheng Guo, Weilin Huang, Matthew R. Scott, Roland Wiest, Michael Dahlweid, Mauricio Reyes
2020	B	`conf`	Deep Learning-based Type Identification of Volumetric MRI Sequences. ICPR Jean Pablo Vieira de Mello, Thiago M. Paixão, Rodrigo Ferreira Berriel, Mauricio Reyes, Claudine Badue, Alberto F. De Souza, Thiago Oliveira-Santos
2020	B	`conf`	Interpretability vs. Complexity: The Friction in Deep Neural Networks. IJCNN José Pereira Amorim, Pedro H. Abreu, Mauricio Reyes, João A. M. Santos
2020	—	`conf`	Interpretability-Guided Content-Based Medical Image Retrieval. MICCAI (1) Wilson Silva, Alexander Pollinger, Jaime S. Cardoso, Mauricio Reyes
2020	—	`conf`	Learning Bloch Simulations for MR Fingerprinting by Invertible Neural Networks. MLMIR@MICCAI Fabian Balsiger, Alain Jungo, Olivier Scheidegger, Benjamin Marty, Mauricio Reyes
2020	J	`jnl`	Learning Bloch Simulations for MR Fingerprinting by Invertible Neural Networks. CoRR Fabian Balsiger, Alain Jungo, Olivier Scheidegger, Benjamin Marty, Mauricio Reyes
2020	—	`conf`	Overall Survival Prediction for Glioblastoma on Pre-treatment MRI Using Robust Radiomics and Priors. BrainLes@MICCAI (1) Yannick Suter, Urspeter Knecht, Roland Wiest, Mauricio Reyes
2020	J	`jnl`	Spatially regularized parametric map reconstruction for fast magnetic resonance fingerprinting. Medical Image Anal. Fabian Balsiger, Alain Jungo, Olivier Scheidegger, Pierre G. Carlier, Mauricio Reyes, Benjamin Marty
2020	—	`conf`	Towards MRI Progression Features for Glioblastoma Patients: From Automated Volumetry and Classical Radiomics to Deep Feature Learning. MLCN/RNO-AI@MICCAI Yannick Suter, Urspeter Knecht, Roland Wiest, Ekkehard Hewer, Philippe Schucht, Mauricio Reyes
2020	J	`jnl`	pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis. CoRR Alain Jungo, Olivier Scheidegger, Mauricio Reyes, Fabian Balsiger
2019	—	`conf`	Assessing Reliability and Challenges of Uncertainty Estimations for Medical Image Segmentation. MICCAI (2) Alain Jungo, Mauricio Reyes
2019	J	`jnl`	Assessing Reliability and Challenges of Uncertainty Estimations for Medical Image Segmentation. CoRR Alain Jungo, Mauricio Reyes
2019	J	`jnl`	Automatic detection of lesion load change in Multiple Sclerosis using convolutional neural networks with segmentation confidence. CoRR Richard McKinley, Lorenz Grunder, Rik Wepfer, Fabian Aschwanden, Tim Fischer, Christoph Friedli, Raphaela Muri, Christian Rummel, Rajeev Verma, Christian Weisstanner, Mauricio Reyes, Anke Salmen, Andrew Chan, Roland Wiest, Franca Wagner
2019	—	`ed.`	Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Revised Selected Papers, Part I BrainLes@MICCAI (1) Alessandro Crimi, Spyridon Bakas, Hugo J. Kuijf, Farahani Keyvan, Mauricio Reyes, Theo van Walsum
2019	—	`ed.`	Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Revised Selected Papers, Part II BrainLes@MICCAI (2) Alessandro Crimi, Spyridon Bakas, Hugo J. Kuijf, Farahani Keyvan, Mauricio Reyes, Theo van Walsum
2019	—	`conf`	Dual-Stream Pyramid Registration Network. MICCAI (2) Xiaojun Hu, Miao Kang, Weilin Huang, Matthew R. Scott, Roland Wiest, Mauricio Reyes
2019	J	`jnl`	Dual-Stream Pyramid Registration Network. CoRR Xiaojun Hu, Miao Kang, Weilin Huang, Matthew R. Scott, Roland Wiest, Mauricio Reyes
2019	J	`jnl`	Few-shot brain segmentation from weakly labeled data with deep heteroscedastic multi-task networks. CoRR Richard McKinley, Michael Rebsamen, Raphael Meier, Mauricio Reyes, Christian Rummel, Roland Wiest
2019	J	`jnl`	Informative sample generation using class aware generative adversarial networks for classification of chest Xrays. CoRR Behzad Bozorgtabar, Dwarikanath Mahapatra, Hendrik von Teng, Alexander Pollinger, Lukas Ebner, Jean-Philippe Thiran, Mauricio Reyes
2019	J	`jnl`	Informative sample generation using class aware generative adversarial networks for classification of chest Xrays. Comput. Vis. Image Underst. Behzad Bozorgtabar, Dwarikanath Mahapatra, Hendrik von Teng, Alexander Pollinger, Lukas Ebner, Jean-Philippe Thiran, Mauricio Reyes
2019	—	`ed.`	Interpretability of Machine Intelligence in Medical Image Computing and Multimodal Learning for Clinical Decision Support - Second International Workshop, iMIMIC 2019, and 9th International Workshop, ML-CDS 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 17, 2019, Proceedings iMIMIC/ML-CDS@MICCAI Kenji Suzuki, Mauricio Reyes, Tanveer F. Syeda-Mahmood, Ben Glocker, Roland Wiest, Yaniv Gur, Hayit Greenspan, Anant Madabhushi
2019	—	`conf`	Learning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation. MICCAI (2) Fabian Balsiger, Yannick Soom, Olivier Scheidegger, Mauricio Reyes
2019	J	`jnl`	Learning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation. CoRR Fabian Balsiger, Yannick Soom, Olivier Scheidegger, Mauricio Reyes
2019	—	`conf`	On the Spatial and Temporal Influence for the Reconstruction of Magnetic Resonance Fingerprinting. MIDL Fabian Balsiger, Olivier Scheidegger, Pierre G. Carlier, Benjamin Marty, Mauricio Reyes
2019	J	`jnl`	Simultaneous lesion and neuroanatomy segmentation in Multiple Sclerosis using deep neural networks. CoRR Richard McKinley, Rik Wepfer, Fabian Aschwanden, Lorenz Grunder, Raphaela Muri, Christian Rummel, Rajeev Verma, Christian Weisstanner, Mauricio Reyes, Anke Salmen, Andrew Chan, Franca Wagner, Roland Wiest
2019	J	`jnl`	Spatially Regularized Parametric Map Reconstruction for Fast Magnetic Resonance Fingerprinting. CoRR Fabian Balsiger, Alain Jungo, Olivier Scheidegger, Pierre G. Carlier, Mauricio Reyes, Benjamin Marty
2019	J	`jnl`	Supervised learning for bone shape and cortical thickness estimation from CT images for finite element analysis. Medical Image Anal. Vimal Chandran, Ghislain Maquer, Thomas Gerig, Philippe Zysset, Mauricio Reyes
2019	—	`conf`	Surface-Based Brain Morphometry for the Prediction of Fluid Intelligence in the Neurocognitive Prediction Challenge 2019. ABCD-NP@MICCAI Michael Rebsamen, Christian Rummel, Ines Mürner-Lavanchy, Mauricio Reyes, Roland Wiest, Richard McKinley
2018	—	`conf`	Automatic Brain Tumor Grading from MRI Data Using Convolutional Neural Networks and Quality Assessment. MLCN/DLF/iMIMIC@MICCAI Sérgio Pereira, Raphael Meier, Victor Alves, Mauricio Reyes, Carlos A. Silva
2018	J	`jnl`	Automatic brain tumor grading from MRI data using convolutional neural networks and quality assessment. CoRR Sérgio Pereira, Raphael Meier, Victor Alves, Mauricio Reyes, Carlos A. Silva
2018	—	`ed.`	Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - Third International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Quebec City, QC, Canada, September 14, 2017, Revised Selected Papers BrainLes@MICCAI Alessandro Crimi, Spyridon Bakas, Hugo J. Kuijf, Bjoern H. Menze, Mauricio Reyes
2018	—	`conf`	Deep Learning Versus Classical Regression for Brain Tumor Patient Survival Prediction. BrainLes@MICCAI (2) Yannick Suter, Alain Jungo, Michael Rebsamen, Urspeter Knecht, Evelyn Herrmann, Roland Wiest, Mauricio Reyes
2018	J	`jnl`	Deep Learning versus Classical Regression for Brain Tumor Patient Survival Prediction. CoRR Yannick Suter, Alain Jungo, Michael Rebsamen, Urspeter Knecht, Evelyn Herrmann, Roland Wiest, Mauricio Reyes
2018	—	`conf`	Efficient Active Learning for Image Classification and Segmentation Using a Sample Selection and Conditional Generative Adversarial Network. MICCAI (2) Dwarikanath Mahapatra, Behzad Bozorgtabar, Jean-Philippe Thiran, Mauricio Reyes
2018	J	`jnl`	Efficient Active Learning for Image Classification and Segmentation using a Sample Selection and Conditional Generative Adversarial Network. CoRR Dwarikanath Mahapatra, Behzad Bozorgtabar, Jean-Philippe Thiran, Mauricio Reyes
2018	—	`conf`	Enhancing Clinical MRI Perfusion Maps with Data-Driven Maps of Complementary Nature for Lesion Outcome Prediction. MICCAI (3) Adriano Pinto, Sérgio Pereira, Raphael Meier, Victor Alves, Roland Wiest, Carlos A. Silva, Mauricio Reyes
2018	J	`jnl`	Enhancing clinical MRI Perfusion maps with data-driven maps of complementary nature for lesion outcome prediction. CoRR Adriano Pinto, Sérgio Pereira, Raphael Meier, Victor Alves, Roland Wiest, Carlos A. Silva, Mauricio Reyes
2018	J	`jnl`	Enhancing interpretability of automatically extracted machine learning features: application to a RBM-Random Forest system on brain lesion segmentation. Medical Image Anal. Sérgio Pereira, Raphael Meier, Richard McKinley, Roland Wiest, Victor Alves, Carlos A. Silva, Mauricio Reyes
2018	—	`conf`	Fast and uncertainty-aware cerebral cortex morphometry estimation using random forest regression. ISBI Yannick Suter, Christian Rummel, Roland Wiest, Mauricio Reyes
2018	J	`jnl`	Highly Accurate Facial Nerve Segmentation Refinement From CBCT/CT Imaging Using a Super-Resolution Classification Approach. IEEE Trans. Biomed. Eng. Ping Lu, Livia Barazzetti, Vimal Chandran, Kate A. Gavaghan, Stefan Weber, Nicolas Gerber, Mauricio Reyes
2018	J	`jnl`	Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge. CoRR Spyridon Bakas, Mauricio Reyes, András Jakab, Stefan Bauer, Markus Rempfler, Alessandro Crimi, Russell Takeshi Shinohara, Christoph Berger, Sung Min Ha, Martin Rozycki, Marcel Prastawa, Esther Alberts, Jana Lipková, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Benedikt Wiestler, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Ujjwal Baid, Dongjin Kwon, Manu Agarwal, Mahbubul Alam, Alberto Albiol, Antonio Albiol, Alex Varghese, Tran Anh Tuan, Tal Arbel, Aaron Avery, Pranjal B., Subhashis Banerjee, Thomas Batchelder, Kayhan N. Batmanghelich, Enzo Battistella, Martin Bendszus, Eze Benson, José Bernal, George Biros, Mariano Cabezas, Siddhartha Chandra, Yi-Ju Chang, et al.
2018	—	`conf`	Magnetic Resonance Fingerprinting Reconstruction via Spatiotemporal Convolutional Neural Networks. MLMIR@MICCAI Fabian Balsiger, Amaresha Shridhar Konar, Shivaprasad Chikop, Vimal Chandran, Olivier Scheidegger, Sairam Geethanath, Mauricio Reyes
2018	J	`jnl`	Magnetic Resonance Fingerprinting Reconstruction via Spatiotemporal Convolutional Neural Networks. CoRR Fabian Balsiger, Amaresha Shridhar Konar, Shivaprasad Chikop, Vimal Chandran, Olivier Scheidegger, Sairam Geethanath, Mauricio Reyes
2018	—	`conf`	On the Effect of Inter-observer Variability for a Reliable Estimation of Uncertainty of Medical Image Segmentation. MICCAI (1) Alain Jungo, Raphael Meier, Ekin Ermis, Marcela Blatti-Moreno, Evelyn Herrmann, Roland Wiest, Mauricio Reyes
2018	J	`jnl`	On the Effect of Inter-observer Variability for a Reliable Estimation of Uncertainty of Medical Image Segmentation. CoRR Alain Jungo, Raphael Meier, Ekin Ermis, Marcela Blatti-Moreno, Evelyn Herrmann, Roland Wiest, Mauricio Reyes
2018	J	`jnl`	Patient-specific estimation of detailed cochlear shape from clinical CT images. Int. J. Comput. Assist. Radiol. Surg. Hans Martin Kjer, Jens Fagertun, Wilhelm Wimmer, Nicolas Gerber, Sergio Vera, Livia Barazzetti, Nerea Mangado Lopez, Mario Ceresa, Gemma Piella, Thomas Stark, Martin Stauber, Mauricio Reyes, Stefan Weber, Marco Caversaccio, Miguel Ángel González Ballester, Rasmus R. Paulsen
2018	J	`jnl`	Uncertainty-driven Sanity Check: Application to Postoperative Brain Tumor Cavity Segmentation. CoRR Alain Jungo, Raphael Meier, Ekin Ermis, Evelyn Herrmann, Mauricio Reyes
2018	—	`ed.`	Understanding and Interpreting Machine Learning in Medical Image Computing Applications - First International Workshops MLCN 2018, DLF 2018, and iMIMIC 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16-20, 2018, Proceedings MLCN/DLF/iMIMIC@MICCAI Danail Stoyanov, Zeike Taylor, Seyed Mostafa Kia, Ipek Oguz, Mauricio Reyes, Anne L. Martel, Lena Maier-Hein, Andre F. Marquand, Edouard Duchesnay, Tommy Löfstedt, Bennett A. Landman, M. Jorge Cardoso, Carlos A. Silva, Sérgio Pereira, Raphael Meier
2017	—	`ed.`	Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment - Fifth International Workshop, CMMI 2017, Second International Workshop, RAMBO 2017, and First International Workshop, SWITCH 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 14, 2017, Proceedings CMMI/RAMBO/SWITCH@MICCAI M. Jorge Cardoso, Tal Arbel, Fei Gao, Bernhard Kainz, Theo van Walsum, Kuangyu Shi, Kanwal K. Bhatia, Roman Peter, Tom Vercauteren, Mauricio Reyes, Adrian V. Dalca, Roland Wiest, Wiro J. Niessen, Bart J. Emmer
2017	J	`jnl`	Perturb-and-MPM: Quantifying Segmentation Uncertainty in Dense Multi-Label CRFs. CoRR Raphael Meier, Urspeter Knecht, Alain Jungo, Roland Wiest, Mauricio Reyes
2017	—	`conf`	Pooling-Free Fully Convolutional Networks with Dense Skip Connections for Semantic Segmentation, with Application to Brain Tumor Segmentation. BrainLes@MICCAI Richard McKinley, Alain Jungo, Roland Wiest, Mauricio Reyes
2017	—	`conf`	Towards Uncertainty-Assisted Brain Tumor Segmentation and Survival Prediction. BrainLes@MICCAI Alain Jungo, Richard McKinley, Raphael Meier, Urspeter Knecht, Luis Vera, Julián Pérez-Beteta, David Molina-García, Víctor M. Pérez-García, Roland Wiest, Mauricio Reyes
2016	—	`conf`	Advanced Design System for Infantile Cranium Shape Model Growth Prediction. MIAR Kamal Shahim, Mauricio Reyes, Ruben Simon, Philipp Jürgens, Christoph Blecher
2016	—	`ed.`	Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - First International Workshop, Brainles 2015, Held in Conjunction with MICCAI 2015, Munich, Germany, October 5, 2015, Revised Selected Papers Brainles@MICCAI Alessandro Crimi, Bjoern H. Menze, Oskar Maier, Mauricio Reyes, Heinz Handels
2016	—	`ed.`	Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - Second International Workshop, BrainLes 2016, with the Challenges on BRATS, ISLES and mTOP 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 17, 2016, Revised Selected Papers BrainLes@MICCAI Alessandro Crimi, Bjoern H. Menze, Oskar Maier, Mauricio Reyes, Stefan Winzeck, Heinz Handels
2016	—	`conf`	CRF-Based Brain Tumor Segmentation: Alleviating the Shrinking Bias. BrainLes@MICCAI Raphael Meier, Urspeter Knecht, Roland Wiest, Mauricio Reyes
2016	—	`conf`	High-Throughput Glomeruli Analysis of μ CT Kidney Images Using Tree Priors and Scalable Sparse Computation. MICCAI (2) Carlos Correa Shokiche, Philipp Baumann, Ruslan Hlushchuk, Valentin Djonov, Mauricio Reyes
2016	—	`conf`	Nabla-net: A Deep Dag-Like Convolutional Architecture for Biomedical Image Segmentation. BrainLes@MICCAI Richard McKinley, Rik Wepfer, Tom Gundersen, Franca Wagner, Andrew Chan, Roland Wiest, Mauricio Reyes
2016	—	`conf`	Super-Resolution Classification Improves Facial Nerve Segmentation from CBCT Imaging. CURAC Ping Lu, Livia Barazzetti, Vimal Chandran, Kate A. Gavaghan, Stefan Weber, Nicolas Gerber, Mauricio Reyes
2015	J	`jnl`	Automatic multi-resolution shape modeling of multi-organ structures. Medical Image Anal. Juan J. Cerrolaza, Mauricio Reyes, Ronald M. Summers, Miguel Ángel González Ballester, Marius George Linguraru
2015	—	`conf`	Correction tool for Active Shape Model based lumbar muscle segmentation. EMBC Waldo Valenzuela, Stephen J. Ferguson, Dominika Ignasiak, Gaelle Diserens, Peter Vermathen, Chris Boesch, Mauricio Reyes
2015	—	`conf`	Facial nerve image enhancement from CBCT using supervised learning technique. EMBC Ping Lu, Livia Barazzetti, Vimal Chandran, Kate A. Gavaghan, Stefan Weber, Nicolas Gerber, Mauricio Reyes
2015	—	`conf`	Parameter Learning for CRF-Based Tissue Segmentation of Brain Tumors. Brainles@MICCAI Raphael Meier, Venetia Karamitsou, Simon Habegger, Roland Wiest, Mauricio Reyes
2015	—	`conf`	Prediction of Trabecular Bone Anisotropy from Quantitative Computed Tomography Using Supervised Learning and a Novel Morphometric Feature Descriptor. MICCAI (1) Vimal Chandran, Philippe Zysset, Mauricio Reyes
2015	—	`conf`	Segmenting the Ischemic Penumbra: A Decision Forest Approach with Automatic Threshold Finding. Brainles@MICCAI Richard McKinley, Levin Häni, Roland Wiest, Mauricio Reyes
2015	J	`jnl`	The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Trans. Medical Imaging Bjoern H. Menze, András Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin S. Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth R. Gerstner, Marc-André Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Herve Delingette, Çagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, José Antonio Mariz, Raphael Meier, Sérgio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael T. Ryan, Duygu Sarikaya, Lawrence H. Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno J. Sousa, Nagesh K. Subbanna, Gábor Székely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gözde B. Ünal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, Darko Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput
2014	—	`conf`	3D Face Reconstruction from Video Using 3D Morphable Model and Silhouette. SIBGRAPI Christian Baumberger, Mauricio Reyes, Mihai Constantinescu, Radu Olariu, Edilson de Aguiar, Thiago Oliveira-Santos
2014	—	`conf`	Generalized Multiresolution Hierarchical Shape Models via Automatic Landmark Clusterization. MICCAI (3) Juan J. Cerrolaza, Arantxa Villanueva, Mauricio Reyes, Rafael Cabeza, Miguel Ángel González Ballester, Marius George Linguraru
2014	—	`conf`	Interactive segmentation of MR images from brain tumor patients. ISBI Stefan Bauer, Nicole Porz, Raphael Meier, Alessia Pica, Johannes Slotboom, Roland Wiest, Mauricio Reyes
2014	—	`conf`	Patient Specific Simulation for Planning of Cochlear Implantation Surgery. CLIP@MICCAI Sergio Vera, Frederic Pérez, Clara Balust, Ramon Trueba, Jordi Rubió, Raul Calvo, Xavier Mazaira, Anandhan Dhanasingh, Livia Barazzetti, Mauricio Reyes, Mario Ceresa, Jens Fagertun, Hans Martin Kjer, Rasmus R. Paulsen, Miguel Ángel González Ballester
2014	—	`conf`	Patient-Specific Semi-supervised Learning for Postoperative Brain Tumor Segmentation. MICCAI (1) Raphael Meier, Stefan Bauer, Johannes Slotboom, Roland Wiest, Mauricio Reyes
2014	—	`conf`	Spatially Varying Registration Using Gaussian Processes. MICCAI (2) Thomas Gerig, Kamal Shahim, Mauricio Reyes, Thomas Vetter, Marcel Lüthi
2014	—	`conf`	Towards automatic MRI volumetry for treatment selection in acute ischemic stroke patients. EMBC Stefan Bauer, Pascal P. Gratz, Jan Gralla, Mauricio Reyes, Roland Wiest
2013	—	`conf`	Accuracy improvement in Cranio-Maxillofacial soft tissue simulation using a muscle embedded meshing approach. EMBC Kamal Shahim, Orcun Goksel, Philipp Jürgens, Mauricio Reyes
2013	J	`jnl`	Hierarchical segmentation-assisted multimodal registration for MR brain images. Comput. Medical Imaging Graph. Huanxiang Lu, Roland Beisteiner, Lutz-Peter Nolte, Mauricio Reyes
2013	—	`conf`	Integrated Spatio-Temporal Segmentation of Longitudinal Brain Tumor Imaging Studies. MCV Stefan Bauer, Jean Tessier, Oliver Krieter, Lutz-Peter Nolte, Mauricio Reyes
2013	J	`jnl`	Integrated segmentation of brain tumor images for radiotherapy and neurosurgery. Int. J. Imaging Syst. Technol. Stefan Bauer, Huanxiang Lu, Christian May, Lutz-Peter Nolte, Philippe Büchler, Mauricio Reyes
2013	—	`conf`	Prediction of Cranio-Maxillofacial Surgical Planning Using an Inverse Soft Tissue Modelling Approach. MICCAI (1) Kamal Shahim, Philipp Jürgens, Philippe C. Cattin, Lutz-Peter Nolte, Mauricio Reyes
2012	J	`jnl`	Capturing the multiscale anatomical shape variability with polyaffine transformation trees. Medical Image Anal. Christof Seiler, Xavier Pennec, Mauricio Reyes
2012	J	`jnl`	Evaluation of a portable image overlay projector for the visualisation of surgical navigation data: phantom studies. Int. J. Comput. Assist. Radiol. Surg. Kate A. Gavaghan, Thiago Oliveira-Santos, Matthias Peterhans, Mauricio Reyes, Hyungmin Kim, Sylvain Anderegg, Stefan Weber
2012	J	`jnl`	Interest points localization for brain image using landmark-annotated atlas. Int. J. Imaging Syst. Technol. Huanxiang Lu, Lutz-Peter Nolte, Mauricio Reyes
2012	J	`jnl`	Multiscale Modeling for Image Analysis of Brain Tumor Studies. IEEE Trans. Biomed. Eng. Stefan Bauer, Christian May, Dimitra D. Dionysiou, Georgios S. Stamatakos, Philippe Büchler, Mauricio Reyes
2012	—	`conf`	Population-Based Design of Mandibular Plates Based on Bone Quality and Morphology. MICCAI (1) Habib Bousleiman, Christof Seiler, Tateyuki Iizuka, Lutz-Peter Nolte, Mauricio Reyes
2012	—	`conf`	Simultaneous Multiscale Polyaffine Registration by Incorporating Deformation Statistics. MICCAI (2) Christof Seiler, Xavier Pennec, Mauricio Reyes
2012	J	`jnl`	Skull-stripping for Tumor-bearing Brain Images CoRR Stefan Bauer, Lutz-Peter Nolte, Mauricio Reyes
2012	J	`jnl`	Statistical model based shape prediction from a combination of direct observations and various surrogates: Application to orthopaedic research. Medical Image Anal. Rémi Blanc, Christof Seiler, Gábor Székely, Lutz-Peter Nolte, Mauricio Reyes
2011	—	`conf`	Diffusion weighted imaging distortion correction using hybrid multimodal image registration. ISBI Huanxiang Lu, Philippe C. Cattin, Lutz-Peter Nolte, Mauricio Reyes
2011	B	`conf`	Femur specific polyaffine model to regularize the log-domain demons registration. Image Processing Christof Seiler, Xavier Pennec, Lucas E. Ritacco, Mauricio Reyes
2011	—	`conf`	Fully Automatic Segmentation of Brain Tumor Images Using Support Vector Machine Classification in Combination with Hierarchical Conditional Random Field Regularization. MICCAI (3) Stefan Bauer, Lutz-Peter Nolte, Mauricio Reyes
2011	—	`conf`	Geometry-Aware Multiscale Image Registration via OBBTree-Based Polyaffine Log-Demons. MICCAI (2) Christof Seiler, Xavier Pennec, Mauricio Reyes
2011	—	`conf`	Minimization of Intra-Operative Shaping of Orthopaedic Fixation Plates: A Population-Based Design. MICCAI (2) Habib Bousleiman, Lucas E. Ritacco, Lutz-Peter Nolte, Mauricio Reyes
2011	—	`conf`	Segmentation of brain tumor images based on atlas-registration combined with a Markov-Random-Field lesion growth model. ISBI Stefan Bauer, Lutz-Peter Nolte, Mauricio Reyes
2010	—	`conf`	Anatomically-Driven Soft-Tissue Simulation Strategy for Cranio-Maxillofacial Surgery Using Facial Muscle Template Model. MICCAI (1) Hyungmin Kim, Philipp Jürgens, Lutz-Peter Nolte, Mauricio Reyes
2010	—	`conf`	Automated Intervertebral Disc Detection from Low Resolution, Sparse MRI Images for the Planning of Scan Geometries. MLMI Xiao Dong, Huanxiang Lu, Yasuo Sakurai, Hitoshi Yamagata, Guoyan Zheng, Mauricio Reyes
2010	—	`conf`	Multi-modal diffeomorphic demons registration based on point-wise mutual information. ISBI Huanxiang Lu, Mauricio Reyes, Amira Serijovic, Stefan Weber, Yasuo Sakurai, Hitoshi Yamagata, Philippe C. Cattin
2010	J	`jnl`	Optimisation of orthopaedic implant design using statistical shape space analysis based on level sets. Medical Image Anal. Nina Kozic, Stefan Weber, Philippe Büchler, Christian Lutz, Nils Reimers, Miguel Ángel González Ballester, Mauricio Reyes
2010	—	`conf`	Parametric regression of 3D medical images through the exploration of non-parametric regression models. ISBI Christof Seiler, Xavier Pennec, Mauricio Reyes
2009	—	`conf`	Anatomical Variability of Organs Via Principal Factor Analysis from the Construction of an Abdominal Probabilistic Atlas. ISBI Mauricio Reyes, Miguel Ángel González Ballester, Zhixi Li, Nina Kozic, See Chin, Ronald M. Summers, Marius George Linguraru
2009	—	`conf`	Conditional Variability of Statistical Shape Models Based on Surrogate Variables. MICCAI (1) Rémi Blanc, Mauricio Reyes, Christof Seiler, Gábor Székely
2009	—	`ch.`	Hierarchical Markov Random Fields Applied to Model Soft Tissue Deformations on Graphics Hardware. Recent Advances in the 3D Physiological Human Christof Seiler, Philippe Büchler, Lutz-Peter Nolte, Mauricio Reyes, Rasmus R. Paulsen
2009	—	`conf`	Population-Specific Evaluation of Implant Bone Fitting Using PCA Shape Space and Level Sets. ISBI Nina Kozic, Miguel Ángel González Ballester, Philippe Büchler, Nils Reimers, Lutz-Peter Nolte, Marius George Linguraru, Mauricio Reyes
2008	—	`conf`	Statistical Shape Space Analysis Based on Level Sets. MIAR Nina Kozic, Miguel Ángel González Ballester, Moritz Tannast, Lutz-Peter Nolte, Mauricio Reyes
2007	—	`conf`	Statistical Shape Analysis via Principal Factor Analysis. ISBI Mauricio Reyes, Marius George Linguraru, Kostas Marias, Nicholas Ayache, Lutz-Peter Nolte, Miguel Ángel González Ballester
2005	—	`conf`	Respiratory Motion Correction in Emission Tomography Image Reconstruction. MICCAI (2) Mauricio Reyes, Grégoire Malandain, Pierre Malick Koulibaly, Miguel Ángel González Ballester, Jacques Darcourt