Mattia Prosperi

99 papers A* 1A 1C 1Misc 5Journal 51Unranked 38

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A topic modeling analysis of stigma dimensions, social, and related behavioral circumstances in clinical notes among patients with HIV. Int. J. Medical Informatics Ziyi Chen, Yiyang Liu, Mattia Prosperi, Krishna Vaddiparti, Robert L. Cook, Jiang Bian, Yi Guo, Yonghui Wu
2026	J	`jnl`	Multi-site analysis of COVID-19 and new-onset diabetes reveals need for improved sensitivity of EHR-based COVID-19 phenotypes - a DiCAYA Network analysis. J. Am. Medical Informatics Assoc. Lorna E. Thorpe, Jasmin Divers, Annemarie Hirsch, Brian S. Schwartz, Bo Cai, Jihad S. Obeid, Angela Liese, Tessa Crume, Anna Bellatorre, Jiang Bian, Yi Guo, Sarah Bost, Tianchen Lyu, Matthew T. Mefford, Matt Zhou, Eva Lustigova, Levon H. Utidjian, Mitchell Maltenfort, Patrick Hanley, Meda E. Pavkov, Marc B. Rosenman, Andrea R. Titus, Charles Bailey, Christopher B. Forrest, Levon Utidjian, Mitch Maltenfort, Amy Shah, Eneida A. Mendonça, G. Todd Alonso, Sara J. Deakyne Davies, H. Timothy Bunnell, Anne Kazak, Melody Kitzmiller, Manmohan Kamboj, Dimitri A. Christakis, Daksha Ranade, Annemarie G. Hirsch, Joseph J. Dewalle, H. Lester Kirchner, Meredith Lewis, Dione G. Mercer, Cara M. Nordberg, Amy Poissant, Brian E. Dixon, Shaun J. Grannis, Katie S. Allen, Anna Roberts, Nimish Valvi, Jeff Warvel, Ashley Wiensch, Tamara S. Hannon, Kristi Reynolds, John Chang, Don McCarthy, Rong Wei, Hui Zhou, Marc Rosenman, Lu Zhang, George Lales, Anthony Wong, Allison Zelinski, Yuan Luo, Mark Weiner, Pedro Rivera, Thomas Carton, Elizabeth Nauman, Harold P. Lehmann, Meredith Akerman, Rebecca Anthopolos, Stefanie Bendik, Sarah Conderino, Andrew Fair, Jessica Guillaume, Shahidul Islam, Alan Jacobson, David C. Lee, Chinyere Okpara, Anand Rajan, Andrea Titus, Dana Dabelea, Theresa Anderson, Rebecca Conway, Toan Ong, Jack Pattee, Shawna Burgett, Hui Shao, Elizabeth A. Shenkman, Sarah J. Bost, William T. Donahoo, William R. Hogan, Piaopiao Li, Mattia Prosperi, Yonghui Wu, Angela D. Liese, Lisa Knight, Caroline Rudisill, Jessica Stucker, Deborah Bowlby, Elaine Apperson, Alex Ewing, Giuseppina Imperatore, Deborah Rolka, Hui Xie, Ibrahim Zaganjor
2025	J	`jnl`	A Topic Modeling Analysis of Stigma Dimensions, Social, and Related Behavioral Circumstances in Clinical Notes Among Patients with HIV. CoRR Ziyi Chen, Yiyang Liu, Mattia Prosperi, Krishna Vaddiparti, Robert L. Cook, Jiang Bian, Yi Guo, Yonghui Wu
2025	—	`conf`	Causal machine learning to investigate the effectiveness of vancomycin as the empiric treatment choice in patients hospitalized with community acquired pneumonia. ICHI Fabrizio Pecoraro, Scott A. Cohen, Mattia Prosperi
2025	—	`conf`	Comparative Evaluation of Clinical Large Language Models and Machine Learning to Predict Antimicrobial Resistance in Hospital-Onset Sepsis. AIME (1) Scott A. Cohen, Ziyi Chen, Jiang Bian, Christina Boucher, Yonghui Wu, Mattia Prosperi
2025	—	`conf`	Enabling Transcriptome Classification in Micro-cohorts with Pathway-Anchoring and Single-Subject Studies. AIME (2) Mahdieh Shabanian, Nima Pouladi, Liam S. Wilson, Mattia Prosperi, Yves A. Lussier
2025	J	`jnl`	Evaluation of Causal Reasoning for Large Language Models in Contextualized Clinical Scenarios of Laboratory Test Interpretation. CoRR Balu Bhasuran, Mattia Prosperi, Karim Hanna, John Petrilli, Caretia JeLayne Washington, Zhe He
2025	J	`jnl`	Leveraging large language models to predict antibiotic resistance in Bioinform. Conrad Testagrose, Sakshi Pandey, Mohammadali Serajian, Simone Marini, Mattia Prosperi, Christina Boucher
2025	J	`jnl`	SARITA: a large language model for generating the S1 subunit of the SARS-CoV-2 spike protein. Briefings Bioinform. Simone Rancati, Giovanna Nicora, Laura Bergomi, Tommaso Mario Buonocore, Daniel M. Czyz, Enea Parimbelli, Riccardo Bellazzi, Marco Salemi, Mattia Prosperi, Simone Marini
2025	J	`jnl`	SDSL-Mobile: Enabling space-efficient data structures for mobile applications. SoftwareX Alexander Barquero, Anisha Wadhwani, Tyler Pencinger, Aaron Hong, Jaime Ruiz, Mattia Prosperi, Christina Boucher
2025	J	`jnl`	Variational temporal deconfounder network for individualized treatment effect estimation with longitudinal observational data. J. Biomed. Informatics Hao Dai, Yu Huang, Yuxi Liu, Xing He, Jingchuan Guo, Mattia Prosperi, Jiang Bian
2025	—	`conf`	What to consider when developing a new molecular HIV surveillance tool: Perspectives of key stakeholders working in HIV prevention and treatment. ICHI Shantrel S. Canidate, Hannah R. Gracy, Sean McIntosh, Yiyang Liu, Rebecca Fisk-Hoffman, Shannon Rich, Carla Mavian, Robert L. Cook, Mattia Prosperi, Marco Salemi
2024	—	`conf`	An Average-Case Efficient Two-Stage Algorithm for Enumerating All Longest Common Substrings of Minimum Length $k$ Between Genome Pairs. ICHI Mattia Prosperi, Simone Marini, Christina Boucher
2024	J	`jnl`	DeepDynaForecast: Phylogenetic-informed graph deep learning for epidemic transmission dynamic prediction. PLoS Comput. Biol. Chaoyue Sun, Ruogu Fang, Marco Salemi, Mattia Prosperi, Brittany Rife Magalis
2024	J	`jnl`	Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders. Briefings Bioinform. Simone Rancati, Giovanna Nicora, Mattia Prosperi, Riccardo Bellazzi, Marco Salemi, Simone Marini
2024	—	`conf`	Identifying Symptoms of Delirium from Clinical Narratives Using Natural Language Processing. ICHI Aokun Chen, Daniel Paredes, Zehao Yu, Xiwei Lou, Roberta Brunson, Jamie N. Thomas, Kimberly A. Martinez, Robert J. Lucero, Tanja Magoc, Laurence M. Solberg, Urszula Alina Snigurska, Sarah E. Ser, Mattia Prosperi, Jiang Bian, Ragnhildur I. Bjarnadottir, Yonghui Wu
2024	—	`conf`	Learning on Forecasting HIV Epidemic Based on Individuals' Contact Networks. BIOSTEC (2) Chaoyue Sun, Yiyang Liu, Christina Parisi, Rebecca Fisk-Hoffman, Marco Salemi, Ruogu Fang, Brandi Danforth, Mattia Prosperi, Simone Marini
2024	—	`conf`	Predicting HIV Diagnosis Among Emerging Adults Using Electronic Health Records and Health Survey Data in All of Us Research Program. BIBM Balu Bhasuran, Yiyang Liu, Mattia Prosperi, Karen MacDonell, Sylvie Naar, Zhe He
2024	—	`conf`	Prediction of A. Baumannii Amikacin Resistance in Clinical Metagenomics. MIE Michael Aaron G. Sy, Mattia Prosperi, Mohammadali Serajian, Christina Boucher, Panayotis Takis Benos, Simone Marini
2024	J	`jnl`	Scalable Bioinform. Mohammadali Serajian, Simone Marini, Jarno N. Alanko, Noelle R. Noyes, Mattia Prosperi, Christina Boucher
2023	J	`jnl`	Application of a practice-based approach in variable selection for a prediction model development study of hospital-induced delirium. BMC Medical Informatics Decis. Mak. Urszula Alina Snigurska, Sarah E. Ser, Laurence M. Solberg, Mattia Prosperi, Tanja Magoc, Zhaoyi Chen, Jiang Bian, Ragnhildur I. Bjarnadottir, Robert J. Lucero
2023	J	`jnl`	Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer's disease and related dementias. Int. J. Medical Informatics Zhaoyi Chen, Hansi Zhang, Xi Yang, Songzi Wu, Xing He, Jie Xu, Jingchuan Guo, Mattia Prosperi, Fei Wang, Hua Xu, Yong Chen, Hui Hu, Steven DeKosky, Matthew Farrer, Yi Guo, Yonghui Wu, Jiang Bian
2023	J	`jnl`	DR-VIDAL - Doubly Robust Variational Information-theoretic Deep Adversarial Learning for Counterfactual Prediction and Treatment Effect Estimation on Real World Data. CoRR Shantanu Ghosh, Zheng Feng, Jiang Bian, Kevin Butler, Mattia Prosperi
2023	J	`jnl`	Identifying Symptoms of Delirium from Clinical Narratives Using Natural Language Processing. CoRR Aokun Chen, Daniel Paredes, Zehao Yu, Xiwei Lou, Roberta Brunson, Jamie N. Thomas, Kimberly A. Martinez, Robert J. Lucero, Tanja Magoc, Laurence M. Solberg, Urszula Alina Snigurska, Sarah E. Ser, Mattia Prosperi, Jiang Bian, Ragnhildur I. Bjarnadottir, Yonghui Wu
2023	J	`jnl`	MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing. Nucleic Acids Res. Nathalie Bonin, Enrique Doster, Hannah Worley, Lee J. Pinnell, Jonathan E. Bravo, Peter Ferm, Simone Marini, Mattia Prosperi, Noelle R. Noyes, Paul S. Morley, Christina Boucher
2023	—	`conf`	Optimizing Dynamic Antibiotic Treatment Strategies against Invasive Methicillin-Resistant Staphylococcus Aureus Infections using Causal Survival Forests and G-Formula on Statewide Electronic Health Record Data. CDPD Inyoung Jun, Scott A. Cohen, Sarah E. Ser, Simone Marini, Robert J. Lucero, Jiang Bian, Mattia Prosperi
2023	—	`conf`	Preface: The 2023 ACM SIGKDD Workshop on Causal Discovery, Prediction and Decision. CDPD Thuc Duy Le, Jiuyong Li, Robert Osazuwa Ness, Sofia Triantafillou, Shohei Shimizu, Peng Cui, Kun Kuang, Jian Pei, Fei Wang, Mattia Prosperi
2023	—	`conf`	Quantification of Racial Disparity on Urinary Tract Infection Recurrence and Treatment Resistance in Florida using Algorithmic Fairness Methods. ICHI Inyoung Jun, Sarah E. S. Leary, Jie Xu, Jiang Bian, Mattia Prosperi
2023	—	`conf`	Real-World Effectiveness of Lung Cancer Screening Using Deep Learning-Based Counterfactual Prediction. MedInfo Zheng Feng, Zhaoyi Chen, Yi Guo, Mattia Prosperi, Hiren J. Mehta, Dejana Braithwaite, Yonghui Wu, Jiang Bian
2023	—	`ed.`	The KDD'23 Workshop on Causal Discovery, Prediction and Decision, 07 August 2023, Long Beach, CA, USA CDPD Thuc Duy Le, Jiuyong Li, Robert Osazuwa Ness, Sofia Triantafillou, Shohei Shimizu, Peng Cui, Kun Kuang, Jian Pei, Fei Wang, Mattia Prosperi
2023	J	`jnl`	The role of health system penetration rate in estimating the prevalence of type 1 diabetes in children and adolescents using electronic health records. J. Am. Medical Informatics Assoc. Piaopiao Li, Tianchen Lyu, Khalid Alkhuzam, Eliot Spector, William T. Donahoo, Sarah Bost, Yonghui Wu, William R. Hogan, Mattia Prosperi, Desmond A. Schatz, Mark A. Atkinson, Michael J. Haller, Elizabeth A. Shenkman, Yi Guo, Jiang Bian, Hui Shao
2022	J	`jnl`	A scoping review of semantic integration of health data and information. Int. J. Medical Informatics Hansi Zhang, Tianchen Lyu, Pengfei Yin, Sarah Bost, Xing He, Yi Guo, Mattia Prosperi, William R. Hogan, Jiang Bian
2022	—	`conf`	An interleaved hardware-accelerated k-mer parser. BIBM Franco Milicchio, Marco Oliva, Mattia Prosperi
2022	—	`conf`	Annotations of Virus Data for Knowledge Enrichment. ICHI Patrizia Vizza, Giuseppe Tradigo, Pietro H. Guzzi, Barbara Puccio, Mattia Prosperi, Carlo Torti, Pierangelo Veltri
2022	J	`jnl`	Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions. Artif. Intell. Medicine Mattia Prosperi, Christina Boucher, Jiang Bian, Simone Marini
2022	J	`jnl`	Biases in using social media data for public health surveillance: A scoping review. Int. J. Medical Informatics Yunpeng Zhao, Xing He, Zheng Feng, Sarah Bost, Mattia Prosperi, Yonghui Wu, Yi Guo, Jiang Bian
2022	Misc	`conf`	Complementing ICD Codes with Nurses' Assessment Data Can Improve the Identification of Patients with Hearing and Visual Impairments. AMIA Urszula Alina Snigurska, Sarah E. Ser, Mattia Prosperi, Ragnhildur I. Bjarnadottir, Robert Lucero
2022	Misc	`conf`	DR-VIDAL - Doubly Robust Variational Information-theoretic Deep Adversarial Learning for Counterfactual Prediction and Treatment Effect Estimation. AMIA Shantanu Ghosh, Zheng Feng, Jiang Bian, Kevin Butler, Mattia Prosperi
2022	J	`jnl`	Finding Overlapping Rmaps via Clustering. IEEE ACM Trans. Comput. Biol. Bioinform. Kingshuk Mukherjee, Daniel Dole-Muinos, Massimiliano Rossi, Ayomide Ajayi, Mattia Prosperi, Christina Boucher
2022	—	`conf`	Identification of Social and Racial Disparities in Risk of HIV Infection in Florida using Causal AI Methods. BIBM Mattia Prosperi, Jie Xu, Jingchuan Serena Guo, Jiang Bian, Wei-Han William Chen, Shantrel Canidate, Simone Marini, Mo Wang
2022	J	`jnl`	Joint Application of the Target Trial Causal Framework and Machine Learning Modeling to Optimize Antibiotic Therapy: Use Case on Acute Bacterial Skin and Skin Structure Infections due to Methicillin-resistant Staphylococcus aureus. CoRR Inyoung Jun, Simone Marini, Christina Boucher, J. Glenn Morris, Jiang Bian, Mattia Prosperi
2022	J	`jnl`	Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics. Bioinform. Simone Marini, Carla Mavian, Alberto Riva, Mattia Prosperi, Marco Salemi, Brittany Rife Magalis
2022	J	`jnl`	Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing. Briefings Bioinform. Simone Marini, Rodrigo A. Mora, Christina Boucher, Noelle Robertson Noyes, Mattia Prosperi
2022	—	`conf`	Transmission cluster characteristics of global, regional, and lineage-specific SARS-CoV-2 phylogenies. BIBM Mattia Prosperi, Brittany Rife Magalis, Simone Marini, Marco Salemi
2022	J	`jnl`	Variational Temporal Deconfounder for Individualized Treatment Effect Estimation from Longitudinal Observational Data. CoRR Zheng Feng, Mattia Prosperi, Jiang Bian
2021	J	`jnl`	Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions. CoRR Mattia Prosperi, Simone Marini, Christina Boucher, Jiang Bian
2021	J	`jnl`	Bagged random causal networks for interventional queries on observational biomedical datasets. J. Biomed. Informatics Mattia Prosperi, Yi Guo, Jiang Bian
2021	—	`conf`	Causal AI with Real World Data: Do Statins Protect from Alzheimer's Disease Onset? ICMHI Mattia Prosperi, Shantanu Ghosh, Zhaoyi Chen, Marco Salemi, Tianchen Lyu, Jinying Zhao, Jiang Bian
2021	J	`jnl`	Challenges in replicating secondary analysis of electronic health records data with multiple computable phenotypes: A case study on methicillin-resistant Int. J. Medical Informatics Inyoung Jun, Shannan N. Rich, Zhaoyi Chen, Jiang Bian, Mattia Prosperi
2021	Misc	`conf`	Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets. AMIA Yunpeng Zhao, Pengfei Yin, Yongqiu Li, Xing He, Jingcheng Du, Cui Tao, Yi Guo, Mattia Prosperi, Pierangelo Veltri, Xi Yang, Yonghui Wu, Jiang Bian
2021	J	`jnl`	Deep propensity network using a sparse autoencoder for estimation of treatment effects. J. Am. Medical Informatics Assoc. Shantanu Ghosh, Jiang Bian, Yi Guo, Mattia Prosperi
2021	—	`conf`	Experimental Survey on Power Dissipation of k-mer-Handling Data Structures for Mobile Bioinformatics. BIBM Franco Milicchio, Mattia Prosperi
2021	J	`jnl`	Exploring the feasibility of using real-world data from a large clinical data research network to simulate clinical trials of Alzheimer's disease. npj Digit. Medicine Zhaoyi Chen, Hansi Zhang, Yi Guo, Thomas J. George, Mattia Prosperi, William R. Hogan, Zhe He, Elizabeth A. Shenkman, Fei Wang, Jiang Bian
2021	J	`jnl`	Fast and exact quantification of motif occurrences in biological sequences. BMC Bioinform. Mattia Prosperi, Simone Marini, Christina Boucher
2021	—	`conf`	KARGA: Multi-platform Toolkit for k-mer-based Antibiotic Resistance Gene Analysis of High-throughput Sequencing Data. BHI Mattia Prosperi, Simone Marini
2021	J	`jnl`	The application of artificial intelligence and data integration in COVID-19 studies: a scoping review. J. Am. Medical Informatics Assoc. Yi Guo, Yahan Zhang, Tianchen Lyu, Mattia Prosperi, Fei Wang, Hua Xu, Jiang Bian
2020	J	`jnl`	An ontology-based documentation of data discovery and integration process in cancer outcomes research. BMC Medical Informatics Decis. Mak. Hansi Zhang, Yi Guo, Mattia Prosperi, Jiang Bian
2020	J	`jnl`	Assessing mental health signals among sexual and gender minorities using Twitter data. Health Informatics J. Yunpeng Zhao, Yi Guo, Xing He, Yonghui Wu, Xi Yang, Mattia Prosperi, Yanghua Jin, Jiang Bian
2020	J	`jnl`	Assessing the effect of data integration on predictive ability of cancer survival models. Health Informatics J. Yi Guo, Jiang Bian, François Modave, Qian Li, Thomas J. George, Mattia Prosperi, Elizabeth Shenkman
2020	J	`jnl`	Assessing the practice of data quality evaluation in a national clinical data research network through a systematic scoping review in the era of real-world data. J. Am. Medical Informatics Assoc. Jiang Bian, Tianchen Lyu, Alexander T. Loiacono, Tonatiuh Mendoza Viramontes, Gloria P. Lipori, Yi Guo, Yonghui Wu, Mattia Prosperi, Thomas J. George, Christopher A. Harle, Elizabeth A. Shenkman, William R. Hogan
2020	J	`jnl`	Causal inference and counterfactual prediction in machine learning for actionable healthcare. Nat. Mach. Intell. Mattia Prosperi, Yi Guo, Matthew Sperrin, James S. Koopman, Jae S. Min, Xing He, Shannan N. Rich, Mo Wang, Iain E. Buchan, Jiang Bian
2020	J	`jnl`	Identification of important factors in an inpatient fall risk prediction model to improve the quality of care using EHR and electronic administrative data: A machine-learning approach. Int. J. Medical Informatics David S. Lindberg, Mattia Prosperi, Ragnhildur I. Bjarnadottir, Jaime Thomas, Marsha Crane, Zhaoyi Chen, Kristen Shear, Laurence M. Solberg, Urszula Alina Snigurska, Yonghui Wu, Yunpeng Xia, Robert J. Lucero
2020	C	`conf`	Integrating Crowdsourcing and Active Learning for Classification of Work-Life Events from Tweets. IEA/AIE Yunpeng Zhao, Mattia Prosperi, Tianchen Lyu, Yi Guo, Le Zhou, Jiang Bian
2020	J	`jnl`	Integrating Crowdsourcing and Active Learning for Classification of Work-Life Events from Tweets. CoRR Yunpeng Zhao, Mattia Prosperi, Tianchen Lyu, Yi Guo, Jiang Bian
2020	J	`jnl`	Mining Twitter to assess the determinants of health behavior toward human papillomavirus vaccination in the United States. J. Am. Medical Informatics Assoc. Hansi Zhang, Christopher Wheldon, Adam G. Dunn, Cui Tao, Jinhai Huo, Rui Zhang, Mattia Prosperi, Yi Guo, Jiang Bian
2020	—	`conf`	Multivariate Independence Set Search via Progressive Addition for Conditional Markov Acyclic Networks. BIBM Mattia Prosperi, Jiang Bian, Mo Wang
2020	—	`conf`	On the use of clinical based infection data for pandemic case studies. BIBM Giuseppe Tradigo, Patrizia Vizza, Gabriel Gabriele, Maria Mazzitelli, Carlo Torti, Mattia Prosperi, Pietro Hiram Guzzi, Pierangelo Veltri
2020	J	`jnl`	Portable nanopore analytics: are we there yet? Bioinform. Marco Oliva, Franco Milicchio, Kaden King, Grace Benson, Christina Boucher, Mattia Prosperi, Inanç Birol
2019	J	`jnl`	A data-driven and practice-based approach to identify risk factors associated with hospital-acquired falls: Applying manual and semi- and fully-automated methods. Int. J. Medical Informatics Robert James Lucero, David S. Lindberg, Elizabeth Fehlberg, Ragnhildur I. Bjarnadottir, Yin Li, Jeannie P. Cimiotti, Marsha Crane, Mattia Prosperi
2019	J	`jnl`	ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design. BMC Medical Informatics Decis. Mak. Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia Prosperi, Jinhai Huo, Jordan Alpert, Jiang Bian
2019	—	`conf`	An Integrated Approach for Efficient Multi-Omics Joint Analysis. BCB Massimiliano S. Tagliamonte, Sheldon G. Waugh, Mattia Prosperi, Volker Mai
2019	—	`conf`	Exploring Lung Cancer Screening Discussions on Twitter. MedInfo Yunpeng Zhao, Jinhai Huo, Mattia Prosperi, Yi Guo, Yongqiu Li, Jiang Bian
2019	J	`jnl`	Flexible design of multiple metagenomics classification pipelines with UGENE. Bioinform. Rebecca Rose, Olga Golosova, Dmitrii Sukhomlinov, Aleksey Tiunov, Mattia Prosperi
2019	J	`jnl`	Is it time to rethink institutional review boards for the era of big data? Nat. Mach. Intell. Mattia Prosperi, Jiang Bian
2019	J	`jnl`	Mining Twitter to Assess the Determinants of Health Behavior towards Human Papillomavirus Vaccination in the United States. CoRR Hansi Zhang, Christopher Wheldon, Adam G. Dunn, Cui Tao, Jinhai Huo, Rui Zhang, Mattia Prosperi, Yi Guo, Jiang Bian
2019	—	`conf`	Understanding Perceptions and Attitudes in Breast Cancer Discussions on Twitter. MedInfo François Modave, Yunpeng Zhao, Janice L. Krieger, Zhe He, Yi Guo, Jinhai Huo, Mattia Prosperi, Jiang Bian
2019	J	`jnl`	Understanding Perceptions and Attitudes in Breast Cancer Discussions on Twitter. CoRR François Modave, Yunpeng Zhao, Janice L. Krieger, Zhe He, Yi Guo, Jinhai Huo, Mattia Prosperi, Jiang Bian
2019	—	`conf`	Unexpected Predictors of Antibiotic Resistance in Housekeeping Genes of Staphylococcus Aureus. BCB Mattia Prosperi, Taj Azarian, Judith A. Johnson, Marco Salemi, Franco Milicchio, Marco Oliva
2018	—	`conf`	An Operational Deep Learning Pipeline for Classifying Life Events from Individual Tweets. SIMBig Xinsong Du, Jiang Bian, Mattia Prosperi
2018	J	`jnl`	Big data hurdles in precision medicine and precision public health. BMC Medical Informatics Decis. Mak. Mattia Prosperi, Jae Min, Jiang Bian, François Modave
2018	Misc	`conf`	Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials. AMIA Hansi Zhang, Zhe He, Xing He, Yi Guo, David R. Nelson, François Modave, Yonghui Wu, William R. Hogan, Mattia Prosperi, Jiang Bian
2018	J	`jnl`	Development of a personalized diagnostic model for kidney stone disease tailored to acute care by integrating large clinical, demographics and laboratory data: the diagnostic acute care algorithm - kidney stones (DACA-KS). BMC Medical Informatics Decis. Mak. Zhaoyi Chen, Victoria Y. Bird, Rupam Ruchi, Mark S. Segal, Jiang Bian, Saeed R. Khan, Marie-Carmelle Elie, Mattia Prosperi
2018	—	`conf`	Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph. BIBM Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia Prosperi, Jiang Bian
2018	—	`conf`	Third-generation sequencing data analytics on mobile devices: cache oblivious and out-of-core approaches as a proof-of-concept. FNC/MobiSPC Franco Milicchio, Marco Oliva, Christina Boucher, Mattia Prosperi
2017	—	`conf`	A new approach to disentangle genetic and epigenetic components on disease comorbidities: studying correlation between genotypic and phenotypic disease networks. FNC/MobiSPC Giuseppe Tradigo, Raffaele Vacca, Todd M. Manini, Victoria Y. Bird, Travis A. Gerke, Pierangelo Veltri, Mattia Prosperi
2017	—	`conf`	Efficient data structures for mobile de novo genome assembly by third-generation sequencing. FNC/MobiSPC Franco Milicchio, Mattia Prosperi
2017	—	`conf`	Explore Care Pathways of Colorectal Cancer Patients with Social Network Analysis. MedInfo Tianyao Huo, Thomas J. George Jr., Yi Guo, Zhe He, Mattia Prosperi, François Modave, Jiang Bian
2016	—	`conf`	Accessible Tourism for the Deaf via Mobile Apps. PETRA Franco Milicchio, Mattia Prosperi
2016	—	`conf`	G-quadruplex Structure Prediction and integration in the GenData2020 data model. BCB Giuseppe Tradigo, Francesca Cristiano, Stefano Alcaro, Sergio Greco, Gianluca Pollastri, Pierangelo Veltri, Mattia Prosperi
2016	—	`conf`	High-performance data structures for de novo assembly of genomes: cache oblivious generic programming. BCB Franco Milicchio, Giuseppe Tradigo, Pierangelo Veltri, Mattia Prosperi
2016	—	`conf`	On the identification of long non-coding RNAs from RNA-seq. BIBM Francesca Cristiano, Pierangelo Veltri, Mattia Prosperi, Giuseppe Tradigo
2016	—	`conf`	Predicting human-immunodeficiency virus rebound after therapy initiation/switch using genetic, laboratory, and clinical data. BCB Mattia Prosperi, Alejandro Pironti, Francesca Incardona, Giuseppe Tradigo, Maurizio Zazzi
2016	J	`jnl`	Visual programming for next-generation sequencing data analytics. BioData Min. Franco Milicchio, Rebecca Rose, Jiang Bian, Jae Min, Mattia Prosperi
2015	—	`conf`	Development and preliminary validation of a dynamic, patient-tailored method to detect abnormal laboratory test results. MedInfo Paolo Fraccaro, Benjamin Brown, Mattia Prosperi, Matthew Sperrin, Iain E. Buchan, Niels Peek
2014	Misc	`conf`	Using String Metrics to Identify Patient Journeys through Care Pathways. AMIA Richard Williams, Iain E. Buchan, Mattia Prosperi, John D. Ainsworth
2008	J	`jnl`	A bacterial colony growth algorithm for mobile robot localization. Auton. Robots Andrea Gasparri, Mattia Prosperi
2008	A*	`conf`	A bacterial colony growth framework for collaborative multi-robot localization. ICRA Andrea Gasparri, Mattia Prosperi
2008	—	`ch.`	Evolutionary Fuzzy Modelling for Drug Resistant HIV-1 Treatment Optimization. Engineering Evolutionary Intelligent Systems Mattia Prosperi, Giovanni Ulivi
2008	A	`conf`	Selecting anti-HIV therapies based on a variety of genomic and clinical factors. ISMB Michal Rosen-Zvi, André Altmann, Mattia Prosperi, Ehud Aharoni, Hani Neuvirth, Anders Sönnerborg, Eugen Schülter, Daniel Struck, Yardena Peres, Francesca Incardona, Rolf Kaiser, Maurizio Zazzi, Thomas Lengauer