Mattia D'Antonio

15 papers B 1Journal 11Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
A GDPR-compliant solution for analysis of large-scale genomics datasets on HPC cloud infrastructure.
J. Big Data
Silvia Gioiosa, Beatrice Chiavarini, Mattia D'Antonio, Giuseppe Trotta, Balasubramanian Chandramouli, Juan Mata Naranjo, Giuseppa Muscianisi, Mirko Cestari, Elisa Rossi
2025 J jnl
An Extract, Transform, Load foundation for Biobank Data Interoperability.
ACM J. Data Inf. Qual.
Antonella Cruoglio, Federica Rossi, Davide Fragnito, Ramona Palombo, Alice Massacci, Martina Betti, Mattia D'Antonio, Massimiliano Borsani, Claudia Miele, Gennaro Ciliberto, Marialuisa Lavitrano, Matteo Pallocca
2023 J jnl
Development of a somatic variant registry in a National Cancer Center: towards Molecular Real World Data preparedness.
J. Biomed. Informatics
Martina Betti, Chiara Maria Salzano, Alice Massacci, Mattia D'Antonio, Isabella Grassucci, Benedetta Marcozzi, Marco Canfora, Elisa Melucci, Simonetta Buglioni, Beatrice Casini, Enzo Gallo, Edoardo Pescarmona, Gennaro Ciliberto, Matteo Pallocca
2017 — conf
Characterization of Genomic Data Using Graph Databases.
PARCO
Mattia D'Antonio, Paolo D'Onorio De Meo, Claudio Cacciari, Giuseppe Fiameni
2017 — conf
I-media-cities, a searchable platform on moving images with automatic and manual annotations.
VSMM
Simona Caraceni, Michele Carpenè, Mattia D'Antonio, Giuseppe Fiameni, Antonella Guidazzoli, Silvano Imboden, Maria Chiara Liguori, Margherita Montanari, Giuseppe Trotta, Gabriella Scipione, Davy Hanegreefs
2017 J jnl
MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data.
Bioinform.
Bruno Fosso, Monica Santamaria, Mattia D'Antonio, Domenica Lovero, Giacomo Corrado, Enrico Vizza, N. Pássaro, Anna Rosa Garbuglia, M. R. Capobianchi, Marco Crescenzi, Gabriel Valiente, Graziano Pesole
2014 — conf
ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data.
HPCS
Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò, Giovanni Erbacci, Matteo Pallocca, Graziano Pesole
2013 J jnl
SpliceAid-F: a database of human splicing factors and their RNA-binding sites.
Nucleic Acids Res.
Matteo Giulietti, Francesco Piva, Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Tiziana Castrignanò, Anna Maria D'Erchia, Ernesto Picardi, Federico Zambelli, Giovanni Principato, Giulio Pavesi, Graziano Pesole
2013 J jnl
WEP: a high-performance analysis pipeline for whole-exome data.
BMC Bioinform.
Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Berardino Elmi, Matteo Pallocca, Nico Sanna, Ernesto Picardi, Graziano Pesole, Tiziana Castrignanò
2012 J jnl
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.
Nucleic Acids Res.
Paolo D'Onorio De Meo, Mattia D'Antonio, Francesca Griggio, Renato Lupi, Massimiliano Borsani, Giulio Pavesi, Tiziana Castrignanò, Graziano Pesole, Carmela Gissi
2011 J jnl
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.
Nucleic Acids Res.
Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole
2011 J jnl
ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.
Bioinform.
Ernesto Picardi, Mattia D'Antonio, Danilo Carrabino, Tiziana Castrignanò, Graziano Pesole
2009 J jnl
Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells.
Database J. Biol. Databases Curation
Francesco Chiani, Camilla Iannone, Rodolfo Negri, Daniele Paoletti, Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò
2008 J jnl
ASPicDB: A database resource for alternative splicing analysis.
Bioinform.
Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Alberto Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole
2008 B conf
HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers.
CCGRID
Paolo D'Onorio De Meo, Danilo Carrabino, Mattia D'Antonio, Annarita D'Addabbo, Sabino Liuni, Flavio Mignone, Graziano Pesole, Nicola Ancona