Matti Pirinen

18 papers Journal 17Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
FINEMAP-miss: fine-mapping genome-wide association studies with missing genotype information.
Bioinform.
Joonas Kartau, Matti Pirinen
2024 J jnl
Exploring machine learning strategies for predicting cardiovascular disease risk factors from multi-omic data.
BMC Medical Informatics Decis. Mak.
Gabin Drouard, Juha Mykkänen, Jarkko Heiskanen, Joona Pohjonen, Saku Ruohonen, Katja Pahkala, Terho Lehtimäki, Xiaoling Wang, Miina Ollikainen, Samuli Ripatti, Matti Pirinen, Olli T. Raitakari, Jaakko Kaprio
2023 J jnl
linemodels: clustering effects based on linear relationships.
Bioinform.
Matti Pirinen
2021 J jnl
Comparison of nomogram with machine learning techniques for prediction of overall survival in patients with tongue cancer.
Int. J. Medical Informatics
Rasheed Omobolaji Alabi, Antti A. Mäkitie, Matti Pirinen, Mohammed Elmusrati, Ilmo Leivo, Alhadi Almangush
2021 J jnl
Machine learning in oral squamous cell carcinoma: Current status, clinical concerns and prospects for future - A systematic review.
Artif. Intell. Medicine
Rasheed Omobolaji Alabi, Omar Youssef, Matti Pirinen, Mohammed Elmusrati, Antti A. Mäkitie, Ilmo Leivo, Alhadi Almangush
2018 — conf
Differences in the Commonly used Genotype Imputation Algorithms and Their Imputation Accuracy Estimates.
eScience
Kalle Parn, Matti Pirinen, Mart Kals, Reedik Mägi, Veikko Salomaa, Michael Boehnke, Ira Hall, Nathan Stitziel, Nelson Freimer, Mark J. Daly, Aarno Palotie, Samuli Ripatti, Priit Palta
2017 J jnl
biMM: efficient estimation of genetic variances and covariances for cohorts with high-dimensional phenotype measurements.
Bioinform.
Matti Pirinen, Christian Benner, Pekka Marttinen, Marjo-Riitta Järvelin, Manuel A. Rivas, Samuli Ripatti
2016 J jnl
FINEMAP: efficient variable selection using summary data from genome-wide association studies.
Bioinform.
Christian Benner, Chris C. A. Spencer, Aki S. Havulinna, Veikko Salomaa, Samuli Ripatti, Matti Pirinen
2016 J jnl
Multiple Output Regression with Latent Noise.
J. Mach. Learn. Res.
Jussi Gillberg, Pekka Marttinen, Matti Pirinen, Antti J. Kangas, Pasi Soininen, Mehreen Ali, Aki S. Havulinna, Marjo-Riitta Järvelin, Mika Ala-Korpela, Samuel Kaski
2016 J jnl
metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis.
Bioinform.
Anna Cichonska, Juho Rousu, Pekka Marttinen, Antti J. Kangas, Pasi Soininen, Terho Lehtimäki, Olli T. Raitakari, Marjo-Riitta Järvelin, Veikko Salomaa, Mika Ala-Korpela, Samuli Ripatti, Matti Pirinen
2015 J jnl
Assessing allele-specific expression across multiple tissues from RNA-seq read data.
Bioinform.
Matti Pirinen, Tuuli Lappalainen, Noah A. Zaitlen, Emmanouil T. Dermitzakis, Peter Donnelly, Mark I. McCarthy, Manuel A. Rivas
2014 J jnl
Assessing multivariate gene-metabolome associations with rare variants using Bayesian reduced rank regression.
Bioinform.
Pekka Marttinen, Matti Pirinen, Antti-Pekka Sarin, Jussi Gillberg, Johannes Kettunen, Ida Surakka, Antti J. Kangas, Pasi Soininen, Paul F. O'Reilly, Marika Kaakinen, Mika Kähönen, Terho Lehtimäki, Mika Ala-Korpela, Olli T. Raitakari, Veikko Salomaa, Marjo-Riitta Järvelin, Samuli Ripatti, Samuel Kaski
2013 J jnl
Assessing association between protein truncating variants and quantitative traits.
Bioinform.
Manuel A. Rivas, Matti Pirinen, Matthew J. Neville, Kyle J. Gaulton, Loukas Moutsianas, Cecilia M. Lindgren, Fredrik Karpe, Mark I. McCarthy, Peter Donnelly
2013 J jnl
Bayesian Information Sharing Between Noise And Regression Models Improves Prediction of Weak Effects.
CoRR
Jussi Gillberg, Pekka Marttinen, Matti Pirinen, Antti J. Kangas, Pasi Soininen, Marjo-Riitta Järvelin, Mika Ala-Korpela, Samuel Kaski
2011 J jnl
Estimating Haplotype Frequencies by Combining Data from Large DNA Pools with Database Information.
IEEE ACM Trans. Comput. Biol. Bioinform.
Dario Gasbarra, Sangita Kulathinal, Matti Pirinen, Mikko J. Sillanpää
2009 J jnl
Estimating population haplotype frequencies from pooled SNP data using incomplete database information.
Bioinform.
Matti Pirinen
2007 J jnl
Estimating genealogies from linked marker data: a Bayesian approach.
BMC Bioinform.
Dario Gasbarra, Matti Pirinen, Mikko J. Sillanpää, Elja Arjas
2006 J jnl
Finding Consistent Gene Transmission Patterns on Large and Complex Pedigrees.
IEEE ACM Trans. Comput. Biol. Bioinform.
Matti Pirinen, Dario Gasbarra