Matthieu-P. Schapranow

43 papers B 5C 4Misc 2Journal 10Unranked 21

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Temporal Fusion Nexus: A task-agnostic multi-modal embedding model for clinical narratives and irregular time series in post-kidney transplant care. CoRR Aditya Kumar, Simon Rauch, Mario A. Cypko, Marcel Ganesh Naik, Matthieu-P. Schapranow, Aadil Rashid, Fabian Halleck, Bilgin Osmanodja, Roland Roller, Lars Pape, Klemens Budde, Mario Schiffer, Oliver Amft
2025	J	`jnl`	High-precision information retrieval for rapid clinical guideline updates. npj Digit. Medicine Florian Borchert, Paul Wullenweber, Annika Oeser, Nina Kreuzberger, Torsten Karge, Thomas Langer, Nicole Skoetz, Lothar H. Wieler, Matthieu-P. Schapranow, Bert Arnrich
2024	J	`jnl`	Improving biomedical entity linking for complex entity mentions with LLM-based text simplification. Database J. Biol. Databases Curation Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow
2023	—	`conf`	A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation. ClinicalNLP@ACL Ignacio Llorca, Florian Borchert, Matthieu-P. Schapranow
2023	—	`conf`	Cross-Lingual Candidate Retrieval and Re-ranking for Biomedical Entity Linking. CLEF Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow
2023	B	`conf`	GGTWEAK: Gene Tagging with Weak Supervision for German Clinical Text. AIME Sandro Steinwand, Florian Borchert, Silvia Winkler, Matthieu-P. Schapranow
2023	—	`conf`	HPIDHC at NTCIR-17 MedNLP-SC: Data Augmentation and Ensemble Learning for Multilingual Adverse Drug Event Detection. NTCIR Smilla Fox, Martin Preiß, Florian Borchert, Aadil Rasheed, Matthieu-P. Schapranow
2023	—	`conf`	Resolving Elliptical Compounds in German Medical Text. BioNLP@ACL Niklas Kammer, Florian Borchert, Silvia Winkler, Gerard de Melo, Matthieu-P. Schapranow
2023	J	`jnl`	Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards. SN Comput. Sci. Matthieu-P. Schapranow, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils
2023	J	`jnl`	xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization. CoRR Florian Borchert, Ignacio Llorca, Roland Roller, Bert Arnrich, Matthieu-P. Schapranow
2022	B	`conf`	GGPONC 2.0 - The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers. LREC Florian Borchert, Christina Lohr, Luise Modersohn, Jonas Witt, Thomas Langer, Markus Follmann, Matthias Gietzelt, Bert Arnrich, Udo Hahn, Matthieu-P. Schapranow
2022	—	`conf`	HPI-DHC @ BioASQ DisTEMIST: Spanish Biomedical Entity Linking with Pre-trained Transformers and Cross-lingual Candidate Retrieval. CLEF (Working Notes) Florian Borchert, Matthieu-P. Schapranow
2021	—	`conf`	A Comparison of Concept Embeddings for German Clinical Corpora. BIBM Aadil Rasheed, Florian Borchert, Lasse Kohlmeyer, Richard Henkenjohann, Matthieu-P. Schapranow
2021	—	`conf`	An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software. IHAW Richard Henkenjohann, Benjamin Bergner, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils, Matthieu-P. Schapranow
2021	Misc	`conf`	Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence. AMIA Florian Borchert, Laura Meister, Thomas Langer, Markus Follmann, Bert Arnrich, Matthieu-P. Schapranow
2021	J	`jnl`	Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow
2021	J	`jnl`	Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow
2021	J	`jnl`	Using interpretability approaches to update "black-box" clinical prediction models: an external validation study in nephrology. Artif. Intell. Medicine Harry Freitas Da Cruz, Boris Pfahringer, Tom Martensen, Frederic Schneider, Alexander Meyer, Erwin P. Böttinger, Matthieu-P. Schapranow
2020	—	`conf`	GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines. LOUHI@EMNLP Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow
2020	J	`jnl`	GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines. CoRR Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow
2019	C	`conf`	An Information and Communication Platform Supporting Analytics for Elderly Care. ICT4AWE Orhan Konak, Harry Freitas Da Cruz, Marvin Thiele, David Golla, Matthieu-P. Schapranow
2019	B	`conf`	External Validation of a "Black-Box" Clinical Predictive Model in Nephrology: Can Interpretability Methods Help Illuminate Performance Differences? AIME Harry Freitas Da Cruz, Boris Pfahringer, Frederic Schneider, Alexander Meyer, Matthieu-P. Schapranow
2019	C	`conf`	MORPHER - A Platform to Support Modeling of Outcome and Risk Prediction in Health Research. BIBE Harry Freitas Da Cruz, Benjamin Bergner, Orhan Konak, Frederic Schneider, Philipp Bode, Conrad Lempert, Matthieu-P. Schapranow
2019	—	`conf`	Prediction of Acute Kidney Injury in Cardiac Surgery Patients: Interpretation using Local Interpretable Model-agnostic Explanations. HEALTHINF Harry Freitas Da Cruz, Frederic Schneider, Matthieu-P. Schapranow
2019	—	`conf`	Qualitative Comparison of Selected Indel Detection Methods for RNA-Seq Data. IWBBIO (1) Tamara Slosarek, Milena Kraus, Matthieu-P. Schapranow, Erwin P. Böttinger
2018	—	`conf`	DEAME - Differential Expression Analysis Made Easy. Poly/DMAH@VLDB Milena Kraus, Guenter Hesse, Tamara Slosarek, Marius Danner, Ajay Kesar, Akshay Bhushan, Matthieu-P. Schapranow
2016	—	`conf`	IMDBfs: Bridging the gap between in-memory database technology and file-based tools for life sciences. BIBM Matthieu-P. Schapranow, Milena Kraus, Marius Danner, Hasso Plattner
2016	—	`conf`	Towards an integrated health research process: A cloud-based approach. IEEE BigData Matthieu-P. Schapranow, Matthias Uflacker, Murat Sariyar, Sebastian C. Semler, Johannes Klaus Fichte, Dietmar Schielke, Kismet Ekinci, Thomas Zahn
2015	—	`ed.`	2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015, Washington, DC, USA, November 9-12, 2015 BIBM Jun Huan, Satoru Miyano, Amarda Shehu, Xiaohua Tony Hu, Bin Ma, Sanguthevar Rajasekaran, Vijay K. Gombar, Matthieu-P. Schapranow, Illhoi Yoo, Jiayu Zhou, Brian Chen, Vinay Pai, Brian G. Pierce
2015	—	`conf`	A Federated In-memory Database System for Life Sciences. BIRTE (Revised Selected Papers) Matthieu-P. Schapranow, Cindy Perscheid, Alf Wachsmann, Martin Siegert, Cornelius Bock, Friedrich Horschig, Franz Liedke, Janos Brauer, Hasso Plattner
2015	Misc	`conf`	Facing the genome data deluge: efficiently identifying genetic variants with in-memory database technology. SAC Cindy Fähnrich, Matthieu-P. Schapranow, Hasso Plattner
2015	—	`conf`	The Medical Knowledge Cockpit: Real-time analysis of big medical data enabling precision medicine. BIBM Matthieu-P. Schapranow, Milena Kraus, Cindy Perscheid, Cornelius Bock, Franz Liedke, Hasso Plattner
2014	—	`conf`	Applying In-Memory Technology for Automatic Template Filling in the Clinical Domain. CLEF (Working Notes) Konrad Herbst, Cindy Fähnrich, Mariana L. Neves, Matthieu-P. Schapranow
2014	C	`conf`	In-memory technology enables interactive drug response analysis. Healthcom Matthieu-P. Schapranow, Konrad Klinghammer, Cindy Fähnrich, Hasso Plattner
2014	—	`conf`	Towards integrating the detection of genetic variants into an in-memory database. IEEE BigData Cindy Fähnrich, Matthieu-P. Schapranow, Hasso Plattner
2013	—	`conf`	HIG - An in-memory database platform enabling real-time analyses of genome data. IEEE BigData Matthieu-P. Schapranow, Hasso Plattner
2012	J	`jnl`	Costs of authentic pharmaceuticals: research on qualitative and quantitative aspects of enabling anti-counterfeiting in RFID-aided supply chains. Pers. Ubiquitous Comput. Matthieu-P. Schapranow, Jürgen Müller, Alexander Zeier, Hasso Plattner
2011	—	`conf`	A Formal Model for Enabling RFID in Pharmaceutical Supply Chains. HICSS Matthieu-P. Schapranow, Alexander Zeier, Hasso Plattner
2011	C	`conf`	Security Extensions for Improving Data Security of Event Repositories in EPCglobal Networks. EUC Matthieu-P. Schapranow, Alexander Zeier, Hasso Plattner
2010	B	`conf`	A Dynamic Mutual RFID Authentication Model Preventing Unauthorized Third Party Access. NSS Matthieu-P. Schapranow, Alexander Zeier, Hasso Plattner
2010	B	`conf`	Enabling real-time charging for smart grid infrastructures using in-memory databases. LCN Matthieu-P. Schapranow, Ralph Kühne, Alexander Zeier, Hasso Plattner
2010	—	`conf`	RFID Event Data Processing: An Architecture for Storing and Searching. IWRT Matthieu-P. Schapranow, Jürgen Müller, Alexander Zeier, Hasso Plattner
2009	—	`conf`	Data Loading and Caching Strategies in Service-Oriented Enterprise Applications. SERVICES I Matthieu-P. Schapranow, Jens Krüger, Vadym Borovskiy, Alexander Zeier, Hasso Plattner