Matthew Sinclair

51 papers Journal 26Unranked 25
YearRankTypeTitle / Venue / Authors
2026 J jnl
Positional Segmentor-Guided Counterfactual Fine-Tuning for Spatially Localized Image Synthesis.
CoRR
Tian Xia, Matthew Sinclair, Andreas Schuh, Fabio De Sousa Ribeiro, Raghav Mehta, Rajat Rasal, Esther Puyol-Antón, Samuel Gerber, Kersten Petersen, Michiel Schaap, Ben Glocker
2025 J jnl
Scalable Agentic Reasoning for Designing Biologics Targeting Intrinsically Disordered Proteins.
CoRR
Matthew Sinclair, Moeen Meigooni, Archit Vasan, Ozan Gökdemir, Xinran Lian, Heng Ma, Yadu N. Babuji, Alexander Brace, Khalid Hossain, Carlo Siebenschuh, Thomas S. Brettin, Kyle Chard, Christopher S. Henry, Venkatram Vishwanath, Rick L. Stevens, Ian T. Foster, Arvind Ramanathan
2025 — conf
Segmentor-Guided Counterfactual Fine-Tuning for Locally Coherent and Targeted Image Synthesis.
MICCAI (2)
Tian Xia, Matthew Sinclair, Andreas Schuh, Fabio De Sousa Ribeiro, Raghav Mehta, Rajat Rasal, Esther Puyol-Antón, Samuel Gerber, Kersten Petersen, Michiel Schaap, Ben Glocker
2025 J jnl
Segmentor-Guided Counterfactual Fine-Tuning for Locally Coherent and Targeted Image Synthesis.
CoRR
Tian Xia, Matthew Sinclair, Andreas Schuh, Fabio De Sousa Ribeiro, Raghav Mehta, Rajat Rasal, Esther Puyol-Antón, Samuel Gerber, Kersten Petersen, Michiel Schaap, Ben Glocker
2025 J jnl
Vector Representations of Vessel Trees.
CoRR
James Batten, Michiel Schaap, Matthew Sinclair, Ying Bai, Ben Glocker
2024 — conf
Finite Volume Informed Graph Neural Network for Myocardial Perfusion Simulation.
MIDL
Raoul Sallé de Chou, Matthew Sinclair, Sabrina R. Lynch, Nan Xiao, Laurent Najman, Irene E. Vignon-Clementel, Hugues Talbot
2024 — conf
Image-To-Tree with Recursive Prompting.
ISBI
James Batten, Matthew Sinclair, Ying Bai, Ben Glocker, Michiel Schaap
2024 — conf
Improved 3D Whole Heart Geometry from Sparse CMR Slices.
CMRxRecon/MBAS/STACOM@MICCAI
Yiyang Xu, Hao Xu, Matthew Sinclair, Esther Puyol-Antón, Steven A. Niederer, Amedeo Chiribiri, Steven E. Williams, Michelle C. Williams, Alistair A. Young
2024 J jnl
Improved 3D Whole Heart Geometry from Sparse CMR Slices.
CoRR
Yiyang Xu, Hao Xu, Matthew Sinclair, Esther Puyol-Antón, Steven A. Niederer, Amedeo Chiribiri, Steven E. Williams, Michelle C. Williams, Alistair A. Young
2023 J jnl
Image To Tree with Recursive Prompting.
CoRR
James Batten, Matthew Sinclair, Ben Glocker, Michiel Schaap
2023 J jnl
Pay Attention to the Atlas: Atlas-Guided Test-Time Adaptation Method for Robust 3D Medical Image Segmentation.
CoRR
Jingjie Guo, Weitong Zhang, Matthew Sinclair, Daniel Rueckert, Chen Chen
2022 J jnl
Atlas-ISTN: Joint segmentation, registration and atlas construction with image-and-spatial transformer networks.
Medical Image Anal.
Matthew Sinclair, Andreas Schuh, Karl Hahn, Kersten Petersen, Ying Bai, James Batten, Michiel Schaap, Ben Glocker
2022 J jnl
CAS-Net: Conditional Atlas Generation and Brain Segmentation for Fetal MRI.
CoRR
Liu Li, Qiang Ma, Matthew Sinclair, Antonios Makropoulos, Joseph V. Hajnal, A. David Edwards, Bernhard Kainz, Daniel Rueckert, Amir Alansary
2022 — conf
MaxStyle: Adversarial Style Composition for Robust Medical Image Segmentation.
MICCAI (5)
Chen Chen, Zeju Li, Cheng Ouyang, Matthew Sinclair, Wenjia Bai, Daniel Rueckert
2022 J jnl
MaxStyle: Adversarial Style Composition for Robust Medical Image Segmentation.
CoRR
Chen Chen, Zeju Li, Cheng Ouyang, Matthew Sinclair, Wenjia Bai, Daniel Rueckert
2021 — conf
CAS-Net: Conditional Atlas Generation and Brain Segmentation for Fetal MRI.
UNSURE/PIPPI@MICCAI
Liu Li, Matthew Sinclair, Antonios Makropoulos, Joseph V. Hajnal, A. David Edwards, Bernhard Kainz, Daniel Rueckert, Amir Alansary
2021 — conf
Detecting Hypo-plastic Left Heart Syndrome in Fetal Ultrasound via Disease-Specific Atlas Maps.
MICCAI (7)
Samuel Budd, Matthew Sinclair, Thomas G. Day, Athanasios Vlontzos, Jeremy Tan, Tianrui Liu, Jacqueline Matthew, Emily Skelton, John M. Simpson, Reza Razavi, Ben Glocker, Daniel Rueckert, Emma C. Robinson, Bernhard Kainz
2021 J jnl
Detecting Hypo-plastic Left Heart Syndrome in Fetal Ultrasound via Disease-specific Atlas Maps.
CoRR
Samuel Budd, Matthew Sinclair, Thomas G. Day, Athanasios Vlontzos, Jeremy Tan, Tianrui Liu, Jacqueline Matthew, Emily Skelton, John M. Simpson, Reza Razavi, Ben Glocker, Daniel Rueckert, Emma C. Robinson, Bernhard Kainz
2020 J jnl
Atlas-ISTN: Joint Segmentation, Registration and Atlas Construction with Image-and-Spatial Transformer Networks.
CoRR
Matthew Sinclair, Andreas Schuh, Karl Hahn, Kersten Petersen, Ying Bai, James Batten, Michiel Schaap, Ben Glocker
2020 J jnl
Automated quantification of myocardial tissue characteristics from native T1 mapping using neural networks with Bayesian inference for uncertainty-based quality-control.
CoRR
Esther Puyol-Antón, Bram Ruijsink, Christian F. Baumgartner, Matthew Sinclair, Ender Konukoglu, Reza Razavi, Andrew P. King
2019 — conf
Confident Head Circumference Measurement from Ultrasound with Real-Time Feedback for Sonographers.
MICCAI (4)
Samuel Budd, Matthew Sinclair, Bishesh Khanal, Jacqueline Matthew, David Lloyd, Alberto Gómez, Nicolas Toussaint, Emma C. Robinson, Bernhard Kainz
2019 J jnl
Confident Head Circumference Measurement from Ultrasound with Real-time Feedback for Sonographers.
CoRR
Samuel Budd, Matthew Sinclair, Bishesh Khanal, Jacqueline Matthew, David Lloyd, Alberto Gómez, Nicolas Toussaint, Emma C. Robinson, Bernhard Kainz
2019 J jnl
Weakly Supervised Estimation of Shadow Confidence Maps in Fetal Ultrasound Imaging.
IEEE Trans. Medical Imaging
Qingjie Meng, James Housden, Jacqueline Matthew, Daniel Rueckert, Julia A. Schnabel, Bernhard Kainz, Matthew Sinclair, Veronika A. Zimmer, Benjamin Hou, Martin Rajchl, Nicolas Toussaint, Ozan Oktay, Jo Schlemper, Alberto Gómez
2018 — conf
3D Fetal Skull Reconstruction from 2DUS via Deep Conditional Generative Networks.
MICCAI (1)
Juan J. Cerrolaza, Yuanwei Li, Carlo Biffi, Alberto Gómez, Matthew Sinclair, Jacqueline Matthew, Caronline Knight, Bernhard Kainz, Daniel Rueckert
2018 — conf
A Comprehensive Approach for Learning-Based Fully-Automated Inter-slice Motion Correction for Short-Axis Cine Cardiac MR Image Stacks.
MICCAI (1)
Giacomo Tarroni, Ozan Oktay, Matthew Sinclair, Wenjia Bai, Andreas Schuh, Hideaki Suzuki, Antonio de Marvao, Declan P. O'Regan, Stuart A. Cook, Daniel Rueckert
2018 J jnl
A Comprehensive Approach for Learning-based Fully-Automated Inter-slice Motion Correction for Short-Axis Cine Cardiac MR Image Stacks.
CoRR
Giacomo Tarroni, Ozan Oktay, Matthew Sinclair, Wenjia Bai, Andreas Schuh, Hideaki Suzuki, Antonio de Marvao, Declan P. O'Regan, Stuart A. Cook, Daniel Rueckert
2018 — conf
Automatic Shadow Detection in 2D Ultrasound Images.
DATRA/PIPPI@MICCAI
Qingjie Meng, Christian F. Baumgartner, Matthew Sinclair, James Housden, Martin Rajchl, Alberto Gómez, Benjamin Hou, Nicolas Toussaint, Veronika A. M. Zimmer, Jeremy Tan, Jacqueline Matthew, Daniel Rueckert, Julia A. Schnabel, Bernhard Kainz
2018 — conf
Automatic left ventricular outflow tract classification for accurate cardiac MR planning.
ISBI
Ilkay Öksüz, Bram Ruijsink, Esther Puyol-Antón, Matthew Sinclair, Daniel Rueckert, Julia A. Schnabel, Andrew P. King
2018 — conf
Deep learning with ultrasound physics for fetal skull segmentation.
ISBI
Juan J. Cerrolaza, Matthew Sinclair, Yuanwei Li, Alberto Gómez, Enzo Ferrante, Jacqueline Matthew, Chandni Gupta, Caroline L. Knight, Daniel Rueckert
2018 — conf
Fast Multiple Landmark Localisation Using a Patch-Based Iterative Network.
MICCAI (1)
Yuanwei Li, Amir Alansary, Juan J. Cerrolaza, Bishesh Khanal, Matthew Sinclair, Jacqueline Matthew, Chandni Gupta, Caroline L. Knight, Bernhard Kainz, Daniel Rueckert
2018 J jnl
Fast Multiple Landmark Localisation Using a Patch-based Iterative Network.
CoRR
Yuanwei Li, Amir Alansary, Juan J. Cerrolaza, Bishesh Khanal, Matthew Sinclair, Jacqueline Matthew, Chandni Gupta, Caroline L. Knight, Bernhard Kainz, Daniel Rueckert
2018 — conf
Fetal Skull Reconstruction via Deep Convolutional Autoencoders.
EMBC
Juan J. Cerrolaza, Yuanwei Li, Carlo Biffi, Alberto Gómez, Jacqueline Matthew, Matthew Sinclair, Chandni Gupta, Caroline L. Knight, Daniel Rueckert
2018 — conf
Fully automated myocardial strain estimation from cine MRI using convolutional neural networks.
ISBI
Esther Puyol-Antón, Bram Ruijsink, Wenjia Bai, Hélène Langet, Mathieu De Craene, Julia A. Schnabel, Paolo Piro, Andrew P. King, Matthew Sinclair
2018 — conf
Human-level Performance On Automatic Head Biometrics In Fetal Ultrasound Using Fully Convolutional Neural Networks.
EMBC
Matthew Sinclair, Christian F. Baumgartner, Jacqueline Matthew, Wenjia Bai, Juan Cerrolaza Martinez, Yuanwei Li, Sandra Smith, Caroline L. Knight, Bernhard Kainz, Joseph V. Hajnal, Andrew P. King, Daniel Rueckert
2018 J jnl
Human-level Performance On Automatic Head Biometrics In Fetal Ultrasound Using Fully Convolutional Neural Networks.
CoRR
Matthew Sinclair, Christian F. Baumgartner, Jacqueline Matthew, Wenjia Bai, Juan Cerrolaza Martinez, Yuanwei Li, Sandra Smith, Caroline L. Knight, Bernhard Kainz, Joseph V. Hajnal, Andrew P. King, Daniel Rueckert
2018 J jnl
Myocardial strain computed at multiple spatial scales from tagged magnetic resonance imaging: Estimating cardiac biomarkers for CRT patients.
Medical Image Anal.
Matthew Sinclair, Devis Peressutti, Esther Puyol-Antón, Wenjia Bai, Simone Rivolo, Jessica Webb, Simon Claridge, Thomas Jackson, David Nordsletten, Myrianthi Hadjicharalambous, Eric Kerfoot, Christopher Aldo Rinaldi, Daniel Rueckert, Andrew P. King
2018 — conf
Standard Plane Detection in 3D Fetal Ultrasound Using an Iterative Transformation Network.
MICCAI (1)
Yuanwei Li, Bishesh Khanal, Benjamin Hou, Amir Alansary, Juan J. Cerrolaza, Matthew Sinclair, Jacqueline Matthew, Chandni Gupta, Caroline L. Knight, Bernhard Kainz, Daniel Rueckert
2018 J jnl
Standard Plane Detection in 3D Fetal Ultrasound Using an Iterative Transformation Network.
CoRR
Yuanwei Li, Bishesh Khanal, Benjamin Hou, Amir Alansary, Juan J. Cerrolaza, Matthew Sinclair, Jacqueline Matthew, Chandni Gupta, Caroline L. Knight, Bernhard Kainz, Daniel Rueckert
2018 J jnl
Weakly Supervised Estimation of Shadow Confidence Maps in Ultrasound Imaging.
CoRR
Qingjie Meng, Matthew Sinclair, Veronika A. M. Zimmer, Benjamin Hou, Martin Rajchl, Nicolas Toussaint, Alberto Gómez, James Housden, Jacqueline Matthew, Daniel Rueckert, Julia A. Schnabel, Bernhard Kainz
2018 — conf
Weakly Supervised Localisation for Fetal Ultrasound Images.
DLMIA/ML-CDS@MICCAI
Nicolas Toussaint, Bishesh Khanal, Matthew Sinclair, Alberto Gómez, Emily Skelton, Jacqueline Matthew, Julia A. Schnabel
2018 J jnl
Weakly Supervised Localisation for Fetal Ultrasound Images.
CoRR
Nicolas Toussaint, Bishesh Khanal, Matthew Sinclair, Alberto Gómez, Emily Skelton, Jacqueline Matthew, Julia A. Schnabel
2017 J jnl
A framework for combining a motion atlas with non-motion information to learn clinically useful biomarkers: Application to cardiac resynchronisation therapy response prediction.
Medical Image Anal.
Devis Peressutti, Matthew Sinclair, Wenjia Bai, Thomas Jackson, Jacobus Ruijsink, David Nordsletten, Liya Asner, Myrianthi Hadjicharalambous, Christopher Aldo Rinaldi, Daniel Rueckert, Andrew P. King
2017 J jnl
A multimodal spatiotemporal cardiac motion atlas from MR and ultrasound data.
Medical Image Anal.
Esther Puyol-Antón, Matthew Sinclair, Bernhard Gerber, Mihaela Silvia Amzulescu, Hélène Langet, Mathieu De Craene, Paul Aljabar, Paolo Piro, Andrew P. King
2017 — conf
Ensembles of Multiple Models and Architectures for Robust Brain Tumour Segmentation.
BrainLes@MICCAI
Konstantinos Kamnitsas, Wenjia Bai, Enzo Ferrante, Steven McDonagh, Matthew Sinclair, Nick Pawlowski, Martin Rajchl, Matthew C. H. Lee, Bernhard Kainz, Daniel Rueckert, Ben Glocker
2017 J jnl
Ensembles of Multiple Models and Architectures for Robust Brain Tumour Segmentation.
CoRR
Konstantinos Kamnitsas, Wenjia Bai, Enzo Ferrante, Steven G. McDonagh, Matthew Sinclair, Nick Pawlowski, Martin Rajchl, Matthew C. H. Lee, Bernhard Kainz, Daniel Rueckert, Ben Glocker
2017 — conf
Fully Automated Segmentation-Based Respiratory Motion Correction of Multiplanar Cardiac Magnetic Resonance Images for Large-Scale Datasets.
MICCAI (2)
Matthew Sinclair, Wenjia Bai, Esther Puyol-Antón, Ozan Oktay, Daniel Rueckert, Andrew P. King
2017 J jnl
Human-level CMR image analysis with deep fully convolutional networks.
CoRR
Wenjia Bai, Matthew Sinclair, Giacomo Tarroni, Ozan Oktay, Martin Rajchl, Ghislain Vaillant, Aaron M. Lee, Nay Aung, Elena Lukaschuk, Mihir M. Sanghvi, Filip Zemrak, Kenneth Fung, José Miguel Paiva, Valentina Carapella, Young Jin Kim, Hideaki Suzuki, Bernhard Kainz, Paul M. Matthews, Steffen E. Petersen, Stefan K. Piechnik, Stefan Neubauer, Ben Glocker, Daniel Rueckert
2017 — conf
Multiview Machine Learning Using an Atlas of Cardiac Cycle Motion.
STACOM@MICCAI
Esther Puyol-Antón, Matthew Sinclair, Bernhard Gerber, Mihaela Silvia Amzulescu, Hélène Langet, Mathieu De Craene, Paul Aljabar, Julia A. Schnabel, Paolo Piro, Andrew P. King
2017 — conf
Semi-supervised Learning for Network-Based Cardiac MR Image Segmentation.
MICCAI (2)
Wenjia Bai, Ozan Oktay, Matthew Sinclair, Hideaki Suzuki, Martin Rajchl, Giacomo Tarroni, Ben Glocker, Andrew P. King, Paul M. Matthews, Daniel Rueckert
2016 — conf
Learning Optimal Spatial Scales for Cardiac Strain Analysis Using a Motion Atlas.
STACOM@MICCAI
Matthew Sinclair, Devis Peressutti, Esther Puyol-Antón, Wenjia Bai, David Nordsletten, Myrianthi Hadjicharalambous, Eric Kerfoot, Tom Jackson, Simon Claridge, C. Aldo Rinaldi, Daniel Rueckert, Andrew P. King
2013 — conf
Modelling Parameter Role on Accuracy of Cardiac Perfusion Quantification.
FIMH
Niloufar Zarinabad Nooralipour, Amedeo Chiribiri, Gilion L. T. F. Hautvast, Andreas Schuster, Matthew Sinclair, Jeroen P. H. M. van den Wijngaard, Nicolas Smith, Jos A. E. Spaan, Maria Siebes, Marcel Breeuwer, Eike Nagel