Matthew Scotch

37 papers Misc 8Journal 21Unranked 8
YearRankTypeTitle / Venue / Authors
2026 J jnl
From Ecological Connectivity to Outbreak Risk: A Heterogeneous Graph Network for Epidemiological Reasoning under Sparse Spatiotemporal Data.
CoRR
Haley Stone, Jing Du, Yang Yang, Ashna Desai, Rebecca Dawson, Hao Xue, David Heslop, Matthew Scotch, Andreas Züfle, C. Raina MacIntyre, Flora Salim
2025 — conf
A Probabilistic Framework for Imputing Genetic Distances in Spatiotemporal Pathogen Models.
SIGSPATIAL/GIS
Haley Stone, Jing Du, Hao Xue, Matthew Scotch, David J. Heslop, Andreas Züfle, C. Raina MacIntyre, Flora Salim
2025 J jnl
A Probabilistic Framework for Imputing Genetic Distances in Spatiotemporal Pathogen Models.
CoRR
Haley Stone, Jing Du, Hao Xue, Matthew Scotch, David J. Heslop, Andreas Züfle, C. Raina MacIntyre, Flora Salim
2025 — conf
EpiScale: Large-Scale Simulation of Infectious Disease Based on Human Mobility.
SIGSPATIAL/GIS
Ruochen Kong, Taylor Anderson, David J. Heslop, Matthew Scotch, Flora D. Salim, Chandini Raina MacIntyre, Andreas Züfle
2025 J jnl
Evaluating the Bias in LLMs for Surveying Opinion and Decision Making in Healthcare.
CoRR
Yonchanok Khaokaew, Flora D. Salim, Andreas Züfle, Hao Xue, Taylor Anderson, C. Raina MacIntyre, Matthew Scotch, David J. Heslop
2025 — conf
Simulated Infectious Diseases Datasets with Controlled Data Bias.
KDD (2)
Ruochen Kong, Taylor Anderson, Matthew Scotch, David J. Heslop, Yonchanok Khaokaew, Hao Xue, Li Xiong, Chandini Raina MacIntyre, Flora D. Salim, Andreas Züfle
2024 J jnl
Leveraging Simulation Data to Understand Bias in Predictive Models of Infectious Disease Spread.
ACM Trans. Spatial Algorithms Syst.
Andreas Züfle, Flora D. Salim, Taylor Anderson, Matthew Scotch, Li Xiong, Kacper Sokol, Hao Xue, Ruochen Kong, David J. Heslop, Hye-Young Paik, C. Raina MacIntyre
2023 J jnl
Foundational domains and competencies for baccalaureate health informatics education.
J. Am. Medical Informatics Assoc.
Saif S. Khairat, Sue S. Feldman, Arif Rana, Mohammad Faysel, Saptarshi Purkayastha, Matthew Scotch, Christina Eldredge
2022 Misc conf
Towards Standards for Undergraduate Health Informatics Education.
AMIA
Christina Eldredge, Saif Khairat, Sue S. Feldman, Matthew Scotch
2021 Misc conf
High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants.
AMIA
Rafaela S. Fontenele, Simona Kraberger, James Hadfield, Erin M. Driver, Devin Bowes, LaRinda A. Holland, Temitope O. Faleye, Sangeet Adhikari, Rahul Kumar, Rosa Inchausti, Wydale K. Holmes, Stephanie Deitrick, Philip Brown, Darrell Duty, Aruni Bhatnagar, Ray A. Yeager, Rochelle H. Holm, Kevin Dixon, Tim Constantine, Melissa A. Wilson, Efrem S. Lim, Xiaofang Jiang, Rolf U. Halden, Matthew Scotch, Arvind Varsani
2020 J jnl
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.
Bioinform.
Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch
2019 Misc conf
Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature.
PSB
Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
2019 — conf
SemEval-2019 Task 12: Toponym Resolution in Scientific Papers.
SemEval@NAACL-HLT
Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez
2018 — conf
Clinical NER and Relation Extraction using Bi-Char-LSTMs and Random Forest Classifiers.
Medication and Adverse Drug Event Detection
Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
2018 J jnl
Deep neural networks and distant supervision for geographic location mention extraction.
Bioinform.
Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
2018 J jnl
GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records.
Bioinform.
Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
2017 J jnl
Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.
PLoS Comput. Biol.
Daniel Magee, Marc A. Suchard, Matthew Scotch
2017 — conf
CSaRUS-CNN at AMIA-2017 Tasks 1, 2: Under Sampled CNN for Text Classification.
SMM4H@AMIA
Arjun Magge, Matthew Scotch, Graciela Gonzalez
2017 J jnl
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research.
Database J. Biol. Databases Curation
Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch
2016 J jnl
A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records.
J. Am. Medical Informatics Assoc.
Tasnia Tahsin, Davy Weissenbacher, Robert Rivera, Rachel Beard, Mari Firago, Garrick L. Wallstrom, Matthew Scotch, Graciela Gonzalez
2016 Misc conf
Session Introduction.
PSB
Michael J. Paul, Abeed Sarker, John S. Brownstein, Azadeh Nikfarjam, Matthew Scotch, Karen L. Smith, Graciela Gonzalez-Hernandez
2015 Misc conf
Analyses of Merging Clinical and Viral Genetic Data for Influenza Surveillance.
AMIA
Daniel Magee, Rachel Beard, Matthew Scotch
2015 J jnl
Knowledge-driven geospatial location resolution for phylogeographic models of virus migration.
Bioinform.
Davy Weissenbacher, Tasnia Tahsin, Rachel Beard, Mari Figaro, Robert Rivera, Matthew Scotch, Graciela Gonzalez
2014 J jnl
Comparison of ARIMA and Random Forest time series models for prediction of avian influenza H5N1 outbreaks.
BMC Bioinform.
Michael J. Kane, Natalie Price, Matthew Scotch, Peter Rabinowitz
2014 — conf
Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses.
BioNLP@ACL
Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick L. Wallstrom, Graciela Gonzalez
2013 Misc conf
Creating a MRSA Ontology to Support Categorization of MRSA Infections.
AMIA
Susana B. Martins, Samson W. Tu, Richard Martinello, Michael Rubin, Philip Foulis, Stephen Luther, Tyler Forbush, Matthew Scotch, Brad Doebbelling, Mary K. Goldstein
2013 J jnl
Using value of information to guide evaluation of decision supports for differential diagnosis: is it time for a new look?
BMC Medical Informatics Decis. Mak.
R. Braithwaite, Matthew Scotch
2011 J jnl
Enhancing phylogeography by improving geographical information from GenBank.
J. Biomed. Informatics
Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez
2011 J jnl
The Yale cTAKES extensions for document classification: architecture and application.
J. Am. Medical Informatics Assoc.
Vijay Garla, Vincent Lo Re III, Zachariah Dorey-Stein, Farah Kidwai, Matthew Scotch, Julie A. Womack, Amy Justice, Cynthia Brandt
2010 J jnl
Brief review: Use of statistical analysis in the biomedical informatics literature.
J. Am. Medical Informatics Assoc.
Matthew Scotch, Mona Duggal, Cynthia Brandt, Zhenqui Lin, Richard N. Shiffman
2008 J jnl
Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques.
J. Am. Medical Informatics Assoc.
Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung
2008 J jnl
Evaluation of SOVAT: An OLAP-GIS decision support system for community health assessment data analysis.
BMC Medical Informatics Decis. Mak.
Matthew Scotch, Bambang Parmanto, Valerie Monaco
2008 J jnl
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0.
J. Biomed. Informatics
Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch
2006 J jnl
Development of SOVAT: A numerical-spatial decision support system for community health assessment research.
Int. J. Medical Informatics
Matthew Scotch, Bambang Parmanto
2005 — conf
SOVAT: Spatial OLAP Visualization and Analysis Tool.
HICSS
Matthew Scotch, Bambang Parmanto
2002 Misc conf
The Companion Project - A Wearable Computing Device for the Patient for Reducing Medical Errors and Improving Patient Care.
AMIA
Matthew Scotch, George Hripcsak
2002 Misc conf
The sublanguage of cross-coverage.
AMIA
Peter D. Stetson, Stephen B. Johnson, Matthew Scotch, George Hripcsak