Matthew J. Clarkson

173 papers A* 3A 2B 4Journal 116Unranked 48

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Correction: Deep hashing for global registration of preoperative CT and video images for laparoscopic liver surgery. Int. J. Comput. Assist. Radiol. Surg. Hanyuan Zhang, Sandun Bulathsinhala, Brian R. Davidson, Matthew J. Clarkson, João Ramalhinho
2026	J	`jnl`	Flow Matching-enabled Test-Time Refinement for Unsupervised Cardiac MR Registration. CoRR Yunguan Fu, Wenjia Bai, Wen Yan, Matthew J. Clarkson, Rhodri H. Davies, Yipeng Hu
2026	J	`jnl`	FoundationPose-Initialized 3D-2D Liver Registration for Surgical Augmented Reality. CoRR Hanyuan Zhang, Lucas He, Runlong He, Abdolrahim Kadkhodamohammadi, Danail Stoyanov, Brian R. Davidson, Evangelos B. Mazomenos, Matthew J. Clarkson
2026	J	`jnl`	SurgFusion-Net: Diversified Adaptive Multimodal Fusion Network for Surgical Skill Assessment. CoRR Runlong He, Freweini M. Tesfai, Matthew Boal, Nazir Sirajudeen, Dimitrios Anastasiou, Jialang Xu, Mobarak I. Hoque, Philip J. Edwards, John D. Kelly, Ashwin Sridhar, Abdolrahim Kadkhodamohammadi, Dhivya Chandrasekaran, Matthew J. Clarkson, Danail Stoyanov, Nader Francis, Evangelos B. Mazomenos
2025	J	`jnl`	3D reconstruction in endonasal pituitary surgery. Int. J. Comput. Assist. Radiol. Surg. Dannielle Lee, Laurent Mennillo, Emalee Burrows, Jia-En Chen, Danyal Z. Khan, Joachim Starup-Hansen, Danail Stoyanov, Matthew J. Clarkson, Hani J. Marcus, Sophia Bano
2025	J	`jnl`	A surgical approach to building impactful artificial intelligence. npj Digit. Medicine Simon C. Williams, Danyal Z. Khan, Sophia Bano, Ann Blandford, Matthew J. Clarkson, Enrico Costanza, Evangelos B. Mazomenos, Danail Stoyanov, Peter McCulloch, Hani J. Marcus
2025	J	`jnl`	An objective comparison of methods for augmented reality in laparoscopic liver resection by preoperative-to-intraoperative image fusion from the MICCAI2022 challenge. Medical Image Anal. Sharib Ali, Yamid Espinel, Yueming Jin, Peng Liu, Bianca Güttner, Xukun Zhang, Lihua Zhang, Thomas Dowrick, Matthew J. Clarkson, Shiting Xiao, Yifan Wu, Yijun Yang, Lei Zhu, Dai Sun, Lan Li, Micha Pfeiffer, Shahid Farid, Lena Maier-Hein, Emmanuel Buc, Adrien Bartoli
2025	J	`jnl`	Augmented reality system for endoscopic pituitary surgery with automatic registration. Int. J. Comput. Assist. Radiol. Surg. Aure Enkaoua, João Ramalhinho, Mobarakol Islam, Hani J. Marcus, Matthew J. Clarkson
2025	J	`jnl`	CineMA: A Foundation Model for Cine Cardiac MRI. CoRR Yunguan Fu, Weixi Yi, Charlotte Manisty, Anish N. Bhuva, Thomas A. Treibel, James C. Moon, Matthew J. Clarkson, Rhodri H. Davies, Yipeng Hu
2025	J	`jnl`	Competing for Pixels: A Self-Play Algorithm for Weakly-Supervised Semantic Segmentation. IEEE Trans. Pattern Anal. Mach. Intell. Shaheer U. Saeed, Shiqi Huang, João Ramalhinho, Iani J. M. B. Gayo, Nina Montaña Brown, Ester Bonmati, Stephen P. Pereira, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
2025	J	`jnl`	Controllable illumination invariant GAN for diverse temporally-consistent surgical video synthesis. Medical Image Anal. Long Chen, Mobarak I. Hoque, Zhe Min, Matthew J. Clarkson, Thomas Dowrick
2025	J	`jnl`	Deep hashing for global registration of preoperative CT and video images for laparoscopic liver surgery. Int. J. Comput. Assist. Radiol. Surg. Hanyuan Zhang, Sandun Bulathsinhala, Brian R. Davidson, Matthew J. Clarkson, João Ramalhinho
2025	—	`conf`	Endo-FASt3r: Endoscopic Foundation Model Adaptation for Structure from Motion. MICCAI (11) Mona Sheikh Zeinoddin, Mobarak I. Hoque, Zafer Tandogdu, Greg Shaw, Matthew J. Clarkson, Evangelos B. Mazomenos, Danail Stoyanov
2025	J	`jnl`	Endo-FASt3r: Endoscopic Foundation model Adaptation for Structure from motion. CoRR Mona Sheikh Zeinoddin, Mobarakol Islam, Zafer Tandogdu, Greg Shaw, Matthew J. Clarkson, Evangelos B. Mazomenos, Danail Stoyanov
2025	—	`conf`	EndoSfM3D: Learning to 3D Reconstruct Any Endoscopic Surgery Scene Using Self-supervised Foundation Model. EMA4MICCAI Changhao Zhang, Matthew J. Clarkson, Mobarak I. Hoque
2025	J	`jnl`	EndoSfM3D: Learning to 3D Reconstruct Any Endoscopic Surgery Scene using Self-supervised Foundation Model. CoRR Changhao Zhang, Matthew J. Clarkson, Mobarak I. Hoque
2025	J	`jnl`	MambaNetLK: Enhancing Colonoscopy Point Cloud Registration with Mamba. CoRR Linzhe Jiang, Jiayuan Huang, Sophia Bano, Matthew J. Clarkson, Zhehua Mao, Mobarak I. Hoque
2025	J	`jnl`	PitVQA++: Vector Matrix-Low-Rank Adaptation for Open-Ended Visual Question Answering in Pituitary Surgery. CoRR Runlong He, Danyal Z. Khan, Evangelos B. Mazomenos, Hani J. Marcus, Danail Stoyanov, Matthew J. Clarkson, Mobarakol Islam
2025	J	`jnl`	Reasoning in machine vision: learning to think fast and slow. CoRR Shaheer U. Saeed, Yipei Wang, Veeru Kasivisvanathan, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu, Daniel C. Alexander
2025	J	`jnl`	Subsampled Randomized Fourier GaLore for Adapting Foundation Models in Depth-Driven Liver Landmark Segmentation. CoRR Yun-Chen Lin, Jiayuan Huang, Hanyuan Zhang, Sergi Kavtaradze, Matthew J. Clarkson, Mobarak I. Hoque
2025	J	`jnl`	SurgAnt-ViVQA: Learning to Anticipate Surgical Events through GRU-Driven Temporal Cross-Attention. CoRR Shreyas C. Dhake, Jiayuan Huang, Runlong He, Danyal Z. Khan, Evangelos B. Mazomenos, Sophia Bano, Hani J. Marcus, Danail Stoyanov, Matthew J. Clarkson, Mobarak I. Hoque
2025	J	`jnl`	SurgicalVLM-Agent: Towards an Interactive AI Co-Pilot for Pituitary Surgery. CoRR Jiayuan Huang, Runlong He, Danyal Z. Khan, Evangelos B. Mazomenos, Danail Stoyanov, Hani J. Marcus, Matthew J. Clarkson, Mobarakol Islam
2025	J	`jnl`	SwinCVS: a unified approach to classifying critical view of safety structures in laparoscopic cholecystectomy. Int. J. Comput. Assist. Radiol. Surg. Franciszek M. Nowak, Evangelos B. Mazomenos, Brian R. Davidson, Matthew J. Clarkson
2025	J	`jnl`	TUS-REC2024: A Challenge to Reconstruct 3D Freehand Ultrasound Without External Tracker. CoRR Qi Li, Shaheer U. Saeed, Yuliang Huang, Mingyuan Luo, Zhongnuo Yan, Jiongquan Chen, Xin Yang, Dong Ni, Nektarios Winter, Phuc Nguyen, Lucas Steinberger, Caelan Haney, Yuan Zhao, Mingjie Jiang, Bowen Ren, SiYeoul Lee, Seonho Kim, Minkyung Seo, Minwoo Kim, Yimeng Dou, Zhiwei Zhang, Yin Li, Tomy Varghese, Dean C. Barratt, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2024	J	`jnl`	Active learning using adaptable task-based prioritisation. Medical Image Anal. Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
2024	J	`jnl`	An objective comparison of methods for augmented reality in laparoscopic liver resection by preoperative-to-intraoperative image fusion. CoRR Sharib Ali, Yamid Espinel, Yueming Jin, Peng Liu, Bianca Güttner, Xukun Zhang, Lihua Zhang, Thomas Dowrick, Matthew J. Clarkson, Shiting Xiao, Yifan Wu, Yijun Yang, Lei Zhu, Dai Sun, Lan Li, Micha Pfeiffer, Shahid Farid, Lena Maier-Hein, Emmanuel Buc, Adrien Bartoli
2024	J	`jnl`	Automated Surgical Skill Assessment in Endoscopic Pituitary Surgery using Real-time Instrument Tracking on a High-fidelity Bench-top Phantom. CoRR Adrito Das, Bilal Sidiqi, Laurent Mennillo, Zhehua Mao, Mikael Brudfors, Miguel Xochicale, Danyal Z. Khan, Nicola Newall, John G. Hanrahan, Matthew J. Clarkson, Danail Stoyanov, Hani J. Marcus, Sophia Bano
2024	J	`jnl`	Can engineers represent surgeons in usability studies? Comparison of results from evaluating augmented reality guidance for laparoscopic surgery. Comput. Graph. Soojeong Yoo, João Ramalhinho, Thomas Dowrick, Murali Somasundaram, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Ann Blandford
2024	J	`jnl`	Competing for pixels: a self-play algorithm for weakly-supervised segmentation. CoRR Shaheer U. Saeed, Shiqi Huang, João Ramalhinho, Iani J. M. B. Gayo, Nina Montaña Brown, Ester Bonmati, Stephen P. Pereira, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
2024	—	`conf`	DARES: Depth Anything in Robotic Endoscopic Surgery with Self-supervised Vector-LoRA of the Foundation Model. ECCV Workshops (11) Mona Sheikh Zeinoddin, Chiara Lena, Jiongqi Qu, Luca Carlini, Mattia Magro, Seunghoi Kim, Elena De Momi, Sophia Bano, Matthew Grech-Sollars, Evangelos B. Mazomenos, Daniel C. Alexander, Danail Stoyanov, Matthew J. Clarkson, Mobarakol Islam
2024	J	`jnl`	DARES: Depth Anything in Robotic Endoscopic Surgery with Self-supervised Vector-LoRA of the Foundation Model. CoRR Mona Sheikh Zeinoddin, Chiara Lena, Jiongqi Qu, Luca Carlini, Mattia Magro, Seunghoi Kim, Elena De Momi, Sophia Bano, Matthew Grech-Sollars, Evangelos B. Mazomenos, Daniel C. Alexander, Danail Stoyanov, Matthew J. Clarkson, Mobarakol Islam
2024	—	`conf`	HUP-3D: A 3D Multi-view Synthetic Dataset for Assisted-Egocentric Hand-Ultrasound-Probe Pose Estimation. MICCAI (1) Manuel Birlo, Razvan Caramalau, Philip J. Edwards, Brian Dromey, Matthew J. Clarkson, Danail Stoyanov
2024	J	`jnl`	HUP-3D: A 3D multi-view synthetic dataset for assisted-egocentric hand-ultrasound pose estimation. CoRR Manuel Birlo, Razvan Caramalau, Philip J. Edwards, Brian Dromey, Matthew J. Clarkson, Danail Stoyanov
2024	J	`jnl`	Illumination Histogram Consistency Metric for Quantitative Assessment of Video Sequences. CoRR Long Chen, Mobarakol Islam, Matthew J. Clarkson, Thomas Dowrick
2024	J	`jnl`	Latent disentanglement in mesh variational autoencoders improves the diagnosis of craniofacial syndromes and aids surgical planning. Comput. Methods Programs Biomed. Simone Foti, Alexander J. Rickart, Bongjin Koo, Eimear O' Sullivan, Lara S. van de Lande, Athanasios Papaioannou, Roman Khonsari, Danail Stoyanov, N. U. Owase Jeelani, Silvia Schievano, David J. Dunaway, Matthew J. Clarkson
2024	J	`jnl`	Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. IEEE Trans. Biomed. Eng. Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2024	—	`conf`	Nonrigid Reconstruction of Freehand Ultrasound Without a Tracker. MICCAI (4) Qi Li, Ziyi Shen, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2024	J	`jnl`	Nonrigid Reconstruction of Freehand Ultrasound without a Tracker. CoRR Qi Li, Ziyi Shen, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2024	J	`jnl`	PitSurgRT: real-time localization of critical anatomical structures in endoscopic pituitary surgery. Int. J. Comput. Assist. Radiol. Surg. Zhehua Mao, Adrito Das, Mobarakol Islam, Danyal Z. Khan, Simon C. Williams, John G. Hanrahan, Anouk Borg, Neil L. Dorward, Matthew J. Clarkson, Danail Stoyanov, Hani J. Marcus, Sophia Bano
2024	—	`conf`	PitVQA: Image-Grounded Text Embedding LLM for Visual Question Answering in Pituitary Surgery. MICCAI (6) Runlong He, Mengya Xu, Adrito Das, Danyal Z. Khan, Sophia Bano, Hani J. Marcus, Danail Stoyanov, Matthew J. Clarkson, Mobarakol Islam
2024	J	`jnl`	PitVQA: Image-grounded Text Embedding LLM for Visual Question Answering in Pituitary Surgery. CoRR Runlong He, Mengya Xu, Adrito Das, Danyal Z. Khan, Sophia Bano, Hani J. Marcus, Danail Stoyanov, Matthew J. Clarkson, Mobarakol Islam
2024	J	`jnl`	Semi-weakly-supervised neural network training for medical image registration. CoRR Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
2024	J	`jnl`	Surgical-DeSAM: Decoupling SAM for Instrument Segmentation in Robotic Surgery. CoRR Yuyang Sheng, Sophia Bano, Matthew J. Clarkson, Mobarakol Islam
2024	J	`jnl`	Surgical-DeSAM: decoupling SAM for instrument segmentation in robotic surgery. Int. J. Comput. Assist. Radiol. Surg. Yuyang Sheng, Sophia Bano, Matthew J. Clarkson, Mobarakol Islam
2024	J	`jnl`	The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy. Int. J. Comput. Assist. Radiol. Surg. Iani J. M. B. Gayo, Shaheer U. Saeed, Ester Bonmati, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
2024	—	`conf`	Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR Images. ISBI Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
2024	J	`jnl`	Weakly supervised localisation of prostate cancer using reinforcement learning for bi-parametric MR images. CoRR Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
2023	J	`jnl`	3D Generative Model Latent Disentanglement via Local Eigenprojection. Comput. Graph. Forum Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
2023	J	`jnl`	3D Generative Model Latent Disentanglement via Local Eigenprojection. CoRR Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
2023	J	`jnl`	A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models. CoRR Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
2023	J	`jnl`	Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. CoRR Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
2023	—	`conf`	Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. MLMI@MICCAI (1) Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
2023	J	`jnl`	Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. CoRR Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed
2023	J	`jnl`	CAL-Tutor: A HoloLens 2 Application for Training in Obstetric Sonography and User Motion Data Recording. J. Imaging Manuel Birlo, Philip Eddie Edwards, Soojeong Yoo, Brian Dromey, Francisco Vasconcelos, Matthew J. Clarkson, Danail Stoyanov
2023	—	`conf`	Enhanced Surgeons: Understanding the Design of Augmented Reality Instructions for Keyhole Surgery. VR Workshops Christoph Davis, Soojeong Yoo, Matthew J. Clarkson, Stephen A. Thompson
2023	—	`conf`	Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. DGM4MICCAI Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
2023	J	`jnl`	Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. CoRR Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
2023	J	`jnl`	Latent Disentanglement in Mesh Variational Autoencoders Improves the Diagnosis of Craniofacial Syndromes and Aids Surgical Planning. CoRR Simone Foti, Alexander J. Rickart, Bongjin Koo, Eimear O' Sullivan, Lara S. van de Lande, Athanasios Papaioannou, Roman Khonsari, Danail Stoyanov, N. U. Owase Jeelani, Silvia Schievano, David J. Dunaway, Matthew J. Clarkson
2023	J	`jnl`	Long-term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. CoRR Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2023	—	`conf`	Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. ASMUS@MICCAI Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2023	J	`jnl`	Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. CoRR Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2023	—	`conf`	Procedurally Generated Colonoscopy and Laparoscopy Data for Improved Model Training Performance. DEMI@MICCAI Thomas Dowrick, Long Chen, João Ramalhinho, Juana González-Bueno Puyal, Matthew J. Clarkson
2023	J	`jnl`	Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. Medical Image Anal. Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
2023	A*	`conf`	SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery. NeurIPS Nina Montaña Brown, Shaheer U. Saeed, Ahmed Abdulaal, Thomas Dowrick, Yakup Kilic, Sophie Wilkinson, Jack Gao, Meghavi Mashar, Chloe He, Alkisti Stavropoulou, Emma Thomson, Zachary M. C. Baum, Simone Foti, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
2023	—	`conf`	The effect of luminance on depth perception in augmented reality guided laparoscopic surgery. Image-Guided Procedures Athena Reissis, Soojeong Yoo, Matthew J. Clarkson, Stephen A. Thompson
2023	J	`jnl`	The value of Augmented Reality in surgery - A usability study on laparoscopic liver surgery. Medical Image Anal. João Ramalhinho, Soojeong Yoo, Thomas Dowrick, Bongjin Koo, Murali Somasundaram, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Ann Blandford, Matthew J. Clarkson
2023	—	`conf`	Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames. ISBI Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2022	A*	`conf`	3D Shape Variational Autoencoder Latent Disentanglement via Mini-Batch Feature Swapping for Bodies and Faces. CVPR Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
2022	J	`jnl`	Active learning using adaptable task-based prioritisation. CoRR Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
2022	J	`jnl`	Automatic Classification of Simulated Breast Tomosynthesis Whole Images for the Presence of Microcalcification Clusters Using Deep CNNs. J. Imaging Ana M. Mota, Matthew J. Clarkson, Pedro Almeida, Nuno Matela
2022	J	`jnl`	Automatic, global registration in laparoscopic liver surgery. Int. J. Comput. Assist. Radiol. Surg. Bongjin Koo, Maria R. Robu, Moustafa Allam, Micha Pfeiffer, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, Stefanie Speidel, David J. Hawkes, Danail Stoyanov, Matthew J. Clarkson
2022	J	`jnl`	Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. IEEE Trans. Medical Imaging Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu
2022	J	`jnl`	Cross-Modality Image Registration using a Training-Time Privileged Third Modality. CoRR Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu
2022	J	`jnl`	Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT. Int. J. Comput. Assist. Radiol. Surg. João Ramalhinho, Bongjin Koo, Nina Montaña Brown, Shaheer U. Saeed, Ester Bonmati, Kurinchi Gurusamy, Stephen P. Pereira, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
2022	—	`conf`	Detection of Microcalcifications in Digital Breast Tomosynthesis using Faster R-CNN and 3D Volume Rendering. BIOIMAGING Ana M. Mota, Matthew J. Clarkson, Pedro Almeida, Nuno Matela
2022	J	`jnl`	Gesture Recognition in Robotic Surgery With Multimodal Attention. IEEE Trans. Medical Imaging Beatrice van Amsterdam, Isabel Funke, Eddie Edwards, Stefanie Speidel, Justin Collins, Ashwin Sridhar, John D. Kelly, Matthew J. Clarkson, Danail Stoyanov
2022	J	`jnl`	Large scale simulation of labeled intraoperative scenes in unity. Int. J. Comput. Assist. Radiol. Surg. Thomas Dowrick, Brian R. Davidson, Kurinchi Gurusamy, Matthew J. Clarkson
2022	J	`jnl`	Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. CoRR Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu
2022	—	`conf`	SciKit-SurgeryGlenoid, an open source toolkit for glenoid version measurement. Image-Guided Procedures Asta Olafsdottir, David Butt, Addie Majed, Mark Falworth, Matthew J. Clarkson, Stephen A. Thompson
2022	J	`jnl`	Software tool for visualization of a probabilistic map of the epileptogenic zone from seizure semiologies. Frontiers Neuroinformatics Fernando Pérez-García, Ali Alim-Marvasti, Gloria Romagnoli, Matthew J. Clarkson, Rachel Sparks, John S. Duncan, Sébastien Ourselin
2022	—	`conf`	Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy. CaPTion@MICCAI Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
2022	J	`jnl`	Strategising template-guided needle placement for MR-targeted prostate biopsy. CoRR Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu
2022	—	`conf`	Towards Multi-modal Self-supervised Video and Ultrasound Pose Estimation for Laparoscopic Liver Surgery. ASMUS@MICCAI Nina Montaña Brown, João Ramalhinho, Bongjin Koo, Moustafa Allam, Brian R. Davidson, Kurinchi Gurusamy, Yipeng Hu, Matthew J. Clarkson
2022	J	`jnl`	Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames. CoRR Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2022	J	`jnl`	Utility of Optical See-Through Head Mounted Displays in Augmented Reality-Assisted Surgery: A systematic review. CoRR Manuel Birlo, P. J. Eddie Edwards, Matthew J. Clarkson, Danail Stoyanov
2022	J	`jnl`	Utility of optical see-through head mounted displays in augmented reality-assisted surgery: A systematic review. Medical Image Anal. Manuel Birlo, P. J. Eddie Edwards, Matthew J. Clarkson, Danail Stoyanov
2022	J	`jnl`	Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks. IEEE Trans. Medical Imaging Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt
2021	J	`jnl`	3D Shape Variational Autoencoder Latent Disentanglement via Mini-Batch Feature Swapping for Bodies and Faces. CoRR Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
2021	—	`conf`	Are fiducial registration error and target registration error correlated? SciKit-SurgeryFRED for teaching and research. Image-Guided Procedures Stephen A. Thompson, Thomas Dowrick, Mian Ahmad, Jeremy Opie, Matthew J. Clarkson
2021	—	`conf`	Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network. ASMUS@MICCAI Alexander Grimwood, João Ramalhinho, Zachary M. C. Baum, Nina Montaña Brown, Gavin J. Johnson, Yipeng Hu, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt, Ester Bonmati
2021	J	`jnl`	Gesture Recognition in Robotic Surgery: A Review. IEEE Trans. Biomed. Eng. Beatrice van Amsterdam, Matthew J. Clarkson, Danail Stoyanov
2021	J	`jnl`	Gesture Recognition in Robotic Surgery: a Review. CoRR Beatrice van Amsterdam, Matthew J. Clarkson, Danail Stoyanov
2021	J	`jnl`	Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware. Int. J. Comput. Assist. Radiol. Surg. Jonathan Shapey, Thomas Dowrick, Rémi Delaunay, Eleanor C. Mackle, Stephen A. Thompson, Mirek Janatka, Roland Guichard, Anastasis Georgoulas, David Pérez-Suárez, Robert Bradford, Shakeel R. Saeed, Sébastien Ourselin, Matthew J. Clarkson, Tom Vercauteren
2021	J	`jnl`	Machine Learning for Localizing Epileptogenic-Zone in the Temporal Lobe: Quantifying the Value of Multimodal Clinical-Semiology and Imaging Concordance. Frontiers Digit. Health Ali Alim-Marvasti, Fernando Pérez-García, Karan Dahele, Gloria Romagnoli, Beate Diehl, Rachel Sparks, Sébastien Ourselin, Matthew J. Clarkson, John S. Duncan
2021	—	`conf`	Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. ISBI Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
2021	J	`jnl`	Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation. CoRR Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
2021	J	`jnl`	Registration of Untracked 2D Laparoscopic Ultrasound to CT Images of the Liver Using Multi-Labelled Content-Based Image Retrieval. IEEE Trans. Medical Imaging João Ramalhinho, Henry F. J. Tregidgo, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Matthew J. Clarkson
2021	J	`jnl`	Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver. Int. J. Comput. Assist. Radiol. Surg. Nina Montaña Brown, João Ramalhinho, Moustafa Allam, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
2021	J	`jnl`	Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks. CoRR Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt
2021	J	`jnl`	Zero-Shot Super-Resolution With a Physically-Motivated Downsampling Kernel for Endomicroscopy. IEEE Trans. Medical Imaging Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren
2021	J	`jnl`	Zero-shot super-resolution with a physically-motivated downsampling kernel for endomicroscopy. CoRR Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren
2020	J	`jnl`	An Enhanced Visualization of DBT Imaging Using Blind Deconvolution and Total Variation Minimization Regularization. IEEE Trans. Medical Imaging Ana M. Mota, Matthew J. Clarkson, Pedro Almeida, Nuno Matela
2020	J	`jnl`	DeepReg: a deep learning toolkit for medical image registration. CoRR Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2020	J	`jnl`	DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
2020	J	`jnl`	Dimensions of ecological validity for usability evaluations in clinical settings. J. Biomed. Informatics Niels van Berkel, Matthew J. Clarkson, Guofang Xiao, Eren Dursun, Moustafa Allam, Brian R. Davidson, Ann Blandford
2020	J	`jnl`	Impact of total variation minimization in volume rendering visualization of breast tomosynthesis data. Comput. Methods Programs Biomed. Ana M. Mota, Matthew J. Clarkson, Pedro Almeida, Luis Peralta, Nuno Matela
2020	—	`conf`	Intraoperative Liver Surface Completion with Graph Convolutional VAE. UNSURE/GRAIL@MICCAI Simone Foti, Bongjin Koo, Thomas Dowrick, João Ramalhinho, Moustafa Allam, Brian R. Davidson, Danail Stoyanov, Matthew J. Clarkson
2020	J	`jnl`	Intraoperative Liver Surface Completion with Graph Convolutional VAE. CoRR Simone Foti, Bongjin Koo, Thomas Dowrick, João Ramalhinho, Moustafa Allam, Brian R. Davidson, Danail Stoyanov, Matthew J. Clarkson
2020	J	`jnl`	Introduction to Medical Image Registration with DeepReg, Between Old and New. CoRR Nina Montaña Brown, Yunguan Fu, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alex Grimwood, Zhe Min, Ester Bonmati, Tom Vercauteren, Matthew J. Clarkson, Yipeng Hu
2020	J	`jnl`	Learning from irregularly sampled data for endomicroscopy super-resolution: a comparative study of sparse and dense approaches. Int. J. Comput. Assist. Radiol. Surg. Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Daniele Ravì, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren
2020	A*	`conf`	Multi-Task Recurrent Neural Network for Surgical Gesture Recognition and Progress Prediction. ICRA Beatrice van Amsterdam, Matthew J. Clarkson, Danail Stoyanov
2020	J	`jnl`	Multi-Task Recurrent Neural Network for Surgical Gesture Recognition and Progress Prediction. CoRR Beatrice van Amsterdam, Matthew J. Clarkson, Danail Stoyanov
2020	J	`jnl`	Optimization of Breast Tomosynthesis Visualization through 3D Volume Rendering. J. Imaging Ana M. Mota, Matthew J. Clarkson, Pedro Almeida, Nuno Matela
2020	J	`jnl`	SciKit-Surgery: compact libraries for surgical navigation. Int. J. Comput. Assist. Radiol. Surg. Stephen A. Thompson, Thomas Dowrick, Mian Ahmad, Goufang Xiao, Bongjin Koo, Ester Bonmati, Kim Kahl, Matthew J. Clarkson
2019	—	`conf`	Generating Large Labeled Data Sets for Laparoscopic Image Processing Tasks Using Unpaired Image-to-Image Translation. MICCAI (5) Micha Pfeiffer, Isabel Funke, Maria R. Robu, Sebastian Bodenstedt, Leon Strenger, Sandy Engelhardt, Tobias Roß, Matthew J. Clarkson, Kurinchi Gurusamy, Brian R. Davidson, Lena Maier-Hein, Carina Riediger, Thilo Welsch, Jürgen Weitz, Stefanie Speidel
2019	J	`jnl`	Generating large labeled data sets for laparoscopic image processing tasks using unpaired image-to-image translation. CoRR Micha Pfeiffer, Isabel Funke, Maria R. Robu, Sebastian Bodenstedt, Leon Strenger, Sandy Engelhardt, Tobias Roß, Matthew J. Clarkson, Kurinchi Gurusamy, Brian R. Davidson, Lena Maier-Hein, Carina Riediger, Thilo Welsch, Jürgen Weitz, Stefanie Speidel
2019	J	`jnl`	Learning from Irregularly Sampled Data for Endomicroscopy Super-resolution: A Comparative Study of Sparse and Dense Approaches. CoRR Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Daniele Ravì, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren
2019	—	`conf`	More Unlabelled Data or Label More Data? A Study on Semi-supervised Laparoscopic Image Segmentation. DART/MIL3ID@MICCAI Yunguan Fu, Maria R. Robu, Bongjin Koo, Crispin Schneider, Stijn van Laarhoven, Danail Stoyanov, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
2019	J	`jnl`	More unlabelled data or label more data? A study on semi-supervised laparoscopic image segmentation. CoRR Yunguan Fu, Maria R. Robu, Bongjin Koo, Crispin Schneider, Stijn van Laarhoven, Danail Stoyanov, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
2019	—	`conf`	Registration of Untracked 2D Laparoscopic Ultrasound Liver Images to CT Using Content-Based Retrieval and Kinematic Priors. SUSI/PIPPI@MICCAI João Ramalhinho, Henry F. J. Tregidgo, Moustafa Allam, Nikolina Travlou, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson
2018	J	`jnl`	A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images. Int. J. Comput. Assist. Radiol. Surg. João Ramalhinho, Maria R. Robu, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson
2018	J	`jnl`	Augmented Reality needle ablation guidance tool for Irreversible Electroporation in the pancreas. CoRR Timur Kuzhagaliyev, Neil T. Clancy, Mirek Janatka, Kevin Tchaka, Francisco Vasconcelos, Matthew J. Clarkson, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Danail Stoyanov
2018	—	`conf`	Augmented reality needle ablation guidance tool for irreversible electroporation in the pancreas. Image-Guided Procedures Timur Kuzhagaliyev, Neil T. Clancy, Mirek Janatka, Kevin Tchaka, Francisco Vasconcelos, Matthew J. Clarkson, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Danail Stoyanov
2018	J	`jnl`	Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks. IEEE Trans. Medical Imaging Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt
2018	J	`jnl`	Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending. Int. J. Comput. Assist. Radiol. Surg. Alejandro Granados, Vejay Vakharia, Roman Rodionov, Martin Schweiger, Sjoerd B. Vos, Aidan G. O'Keeffe, Kuo Li, Chengyuan Wu, Anna Miserocchi, Andrew W. McEvoy, Matthew J. Clarkson, John S. Duncan, Rachel Sparks, Sébastien Ourselin
2018	J	`jnl`	Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures. Int. J. Comput. Assist. Radiol. Surg. Ester Bonmati, Yipeng Hu, Eli Gibson, Laura Uribarri, Geri Keane, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt
2018	J	`jnl`	Global rigid registration of CT to video in laparoscopic liver surgery. Int. J. Comput. Assist. Radiol. Surg. Maria R. Robu, João Ramalhinho, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Danail Stoyanov, Matthew J. Clarkson
2018	J	`jnl`	In vivo estimation of target registration errors during augmented reality laparoscopic surgery. Int. J. Comput. Assist. Radiol. Surg. Stephen A. Thompson, Crispin Schneider, Michele Bosi, Kurinchi Gurusamy, Sébastien Ourselin, Brian R. Davidson, David J. Hawkes, Matthew J. Clarkson
2018	—	`conf`	Spectral Imaging Of Thermal Damage Induced During Microwave Ablation In The Liver. EMBC Neil T. Clancy, Kurinchi Gurusamy, Geoffrey Jones, Brian R. Davidson, Matthew J. Clarkson, David J. Hawkes, Danail Stoyanov
2017	—	`conf`	Breathing motion compensated registration of laparoscopic liver ultrasound to CT. Image-Guided Procedures João Ramalhinho, Maria Robu, Stephen A. Thompson, Philip J. Edwards, Crispin Schneider, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson
2017	—	`conf`	Deep residual networks for automatic segmentation of laparoscopic videos of the liver. Image-Guided Procedures Eli Gibson, Maria R. Robu, Stephen A. Thompson, Eddie Edwards, Crispin Schneider, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson
2017	J	`jnl`	Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy. IEEE Trans. Biomed. Eng. Yipeng Hu, Veeru Kasivisvanathan, Lucy A. M. Simmons, Matthew J. Clarkson, Stephen A. Thompson, Taimur T. Shah, Hashim Uddin Ahmed, Shonit Punwani, David J. Hawkes, Mark Emberton, Caroline M. Moore, Dean C. Barratt
2017	J	`jnl`	Intelligent viewpoint selection for efficient CT to video registration in laparoscopic liver surgery. Int. J. Comput. Assist. Radiol. Surg. Maria Robu, Philip J. Edwards, João Ramalhinho, Stephen A. Thompson, Brian R. Davidson, David J. Hawkes, Danail Stoyanov, Matthew J. Clarkson
2017	—	`conf`	On pattern selection for laparoscope calibration. Image-Guided Procedures Stephen A. Thompson, Yannic Meuer, Eddie Edwards, João Ramalhinho, Maria Ruxandra Robu, Danail Stoyanov, Sébastien Ourselin, Brian R. Davidson, David J. Hawkes, Matthew J. Clarkson
2017	—	`conf`	Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks. MICCAI (1) Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt
2016	—	`conf`	Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound. CARE@MICCAI Ester Bonmati, Yipeng Hu, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt
2016	J	`jnl`	Hand-eye calibration for rigid laparoscopes using an invariant point. Int. J. Comput. Assist. Radiol. Surg. Stephen A. Thompson, Danail Stoyanov, Crispin Schneider, Kurinchi Gurusamy, Sébastien Ourselin, Brian R. Davidson, David J. Hawkes, Matthew J. Clarkson
2015	—	`conf`	Accuracy validation of an image guided laparoscopy system for liver resection. Image-Guided Procedures Stephen A. Thompson, Johannes Totz, Yi Song, Stian Flage Johnsen, Danail Stoyanov, Sébastien Ourselin, Kurinchi Gurusamy, Crispin Schneider, Brian R. Davidson, David J. Hawkes, Matthew J. Clarkson
2015	—	`conf`	Database-Based Estimation of Liver Deformation under Pneumoperitoneum for Surgical Image-Guidance and Simulation. MICCAI (2) Stian Flage Johnsen, Stephen A. Thompson, Matthew J. Clarkson, Marc Modat, Yi Song, Johannes Totz, Kurinchi Gurusamy, Brian R. Davidson, Zeike A. Taylor, David J. Hawkes, Sébastien Ourselin
2015	J	`jnl`	Detection and modelling of contacts in explicit finite-element simulation of soft tissue biomechanics. Int. J. Comput. Assist. Radiol. Surg. Stian Flage Johnsen, Zeike A. Taylor, Lianghao Han, Yipeng Hu, Matthew J. Clarkson, David J. Hawkes, Sébastien Ourselin
2015	J	`jnl`	Locally rigid, vessel-based registration for laparoscopic liver surgery. Int. J. Comput. Assist. Radiol. Surg. Yi Song, Johannes Totz, Steve Thompson, Stian Flage Johnsen, Dean C. Barratt, Crispin Schneider, Kurinchi Gurusamy, Brian R. Davidson, Sébastien Ourselin, David J. Hawkes, Matthew J. Clarkson
2015	J	`jnl`	NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics. Int. J. Comput. Assist. Radiol. Surg. Stian Flage Johnsen, Zeike A. Taylor, Matthew J. Clarkson, John H. Hipwell, Marc Modat, Björn Eiben, Lianghao Han, Yipeng Hu, Thomy Mertzanidou, David J. Hawkes, Sébastien Ourselin
2015	J	`jnl`	The NifTK software platform for image-guided interventions: platform overview and NiftyLink messaging. Int. J. Comput. Assist. Radiol. Surg. Matthew J. Clarkson, Gergely Zombori, Steve Thompson, Johannes Totz, Yi Song, Miklos Espak, Stian Flage Johnsen, David J. Hawkes, Sébastien Ourselin
2014	—	`conf`	2D-3D Pose Tracking of Rigid Instruments in Minimally Invasive Surgery. IPCAI Max Allan, Steve Thompson, Matthew J. Clarkson, Sébastien Ourselin, David J. Hawkes, John D. Kelly, Danail Stoyanov
2014	—	`conf`	A Computer Assisted Planning System for the Placement of sEEG Electrodes in the Treatment of Epilepsy. IPCAI Gergely Zombori, Roman Rodionov, Mark Nowell, Maria A. Zuluaga, Matthew J. Clarkson, Caroline Micallef, Beate Diehl, Tim Wehner, A. Miserochi, Andrew W. McEvoy, John S. Duncan, Sébastien Ourselin
2014	—	`conf`	Fast Semi-dense Surface Reconstruction from Stereoscopic Video in Laparoscopic Surgery. IPCAI Johannes Totz, Stephen A. Thompson, Danail Stoyanov, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Matthew J. Clarkson
2012	J	`jnl`	An event-based model for disease progression and its application in familial Alzheimer's disease and Huntington's disease. NeuroImage Hubert M. J. Fonteijn, Marc Modat, Matthew J. Clarkson, Josephine Barnes, Manja Lehmann, Nicola Z. Hobbs, Rachael I. Scahill, Sarah J. Tabrizi, Sébastien Ourselin, Nick C. Fox, Daniel C. Alexander
2012	—	`conf`	Cortical Folding Analysis on Patients with Alzheimer's Disease and Mild Cognitive Impairment. MICCAI (3) David M. Cash, Andrew Melbourne, Marc Modat, Manuel Jorge Cardoso, Matthew J. Clarkson, Nick C. Fox, Sébastien Ourselin
2012	—	`conf`	Explicit contact modeling for surgical computer guidance and simulation. Image-Guided Procedures Stian Flage Johnsen, Zeike A. Taylor, Matthew J. Clarkson, Stephen A. Thompson, M. Hu, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Sébastien Ourselin
2011	J	`jnl`	A comparison of voxel and surface based cortical thickness estimation methods. NeuroImage Matthew J. Clarkson, Manuel Jorge Cardoso, Gerard R. Ridgway, Marc Modat, Kelvin K. Leung, Jonathan D. Rohrer, Nick C. Fox, Sébastien Ourselin
2011	—	`conf`	An Event-Based Disease Progression Model and Its Application to Familial Alzheimer's Disease. IPMI Hubert M. J. Fonteijn, Matthew J. Clarkson, Marc Modat, Josephine Barnes, Manja Lehmann, Sébastien Ourselin, Nick C. Fox, Daniel C. Alexander
2011	—	`conf`	Cross-sectional analysis using voxel or surface based cortical thickness methods: A comparison study. ISBI Matthew J. Clarkson, Manuel Jorge Cardoso, Marc Modat, Gerard R. Ridgway, Kelvin K. Leung, Jonathan D. Rohrer, Nick C. Fox, Sébastien Ourselin
2011	J	`jnl`	LoAd: A locally adaptive cortical segmentation algorithm. NeuroImage Manuel Jorge Cardoso, Matthew J. Clarkson, Gerard R. Ridgway, Marc Modat, Nick C. Fox, Sébastien Ourselin
2011	—	`conf`	Longitudinal Cortical Thickness Estimation Using Khalimsky's Cubic Complex. MICCAI (2) Manuel Jorge Cardoso, Matthew J. Clarkson, Marc Modat, Sébastien Ourselin
2011	—	`conf`	On the Extraction of Topologically Correct Thickness Measurements Using Khalimsky's Cubic Complex. IPMI Manuel Jorge Cardoso, Matthew J. Clarkson, Marc Modat, Sébastien Ourselin
2011	B	`conf`	Topologically correct cortical segmentation using Khalimsky's cubic complex framework. Image Processing Manuel Jorge Cardoso, Matthew J. Clarkson, Marc Modat, Hugues Talbot, Michel Couprie, Sébastien Ourselin
2010	—	`conf`	A Framework for Using Diffusion Weighted Imaging to Improve Cortical Parcellation. MICCAI (1) Matthew J. Clarkson, Ian B. Malone, Marc Modat, Kelvin K. Leung, Natalie S. Ryan, Daniel C. Alexander, Nick C. Fox, Sébastien Ourselin
2010	J	`jnl`	Automated cross-sectional and longitudinal hippocampal volume measurement in mild cognitive impairment and Alzheimer's disease. NeuroImage Kelvin K. Leung, Josephine Barnes, Gerard R. Ridgway, Jonathan W. Bartlett, Matthew J. Clarkson, Kate E. Macdonald, Norbert Schuff, Nick C. Fox, Sébastien Ourselin
2010	—	`conf`	Combined Reconstruction and Registration of Digital Breast Tomosynthesis. Digital Mammography / IWDM Guang Yang, John H. Hipwell, Matthew J. Clarkson, Christine Tanner, Thomy Mertzanidou, Spencer Gunn, Sébastien Ourselin, David J. Hawkes, Simon R. Arridge
2010	J	`jnl`	Head size, age and gender adjustment in MRI studies: a necessary nuisance? NeuroImage Josephine Barnes, Gerard R. Ridgway, Jonathan W. Bartlett, Susie M. D. Henley, Manja Lehmann, Nicola Z. Hobbs, Matthew J. Clarkson, David G. MacManus, Sébastien Ourselin, Nick C. Fox
2010	—	`conf`	Increasing Power to Predict Mild Cognitive Impairment Conversion to Alzheimer's Disease Using Hippocampal Atrophy Rate and Statistical Shape Models. MICCAI (2) Kelvin K. Leung, Kai-Kai Shen, Josephine Barnes, Gerard R. Ridgway, Matthew J. Clarkson, Jurgen Fripp, Olivier Salvado, Fabrice Mériaudeau, Nick C. Fox, Pierrick Bourgeat
2010	—	`conf`	Locally weighted Markov random fields for cortical segmentation. ISBI Manuel Jorge Cardoso, Matthew J. Clarkson, Marc Modat, Gerard R. Ridgway, Sébastien Ourselin
2010	J	`jnl`	Progressive logopenic/phonological aphasia: Erosion of the language network. NeuroImage Jonathan D. Rohrer, Gerard R. Ridgway, Sebastian J. Crutch, Julia C. Hailstone, Johanna C. Goll, Matthew J. Clarkson, Simon Mead, Jonathan Beck, Cath Mummery, Sébastien Ourselin, Elizabeth K. Warrington, Martin Rossor, Jason D. Warren
2010	J	`jnl`	Robust atrophy rate measurement in Alzheimer's disease using multi-site serial MRI: Tissue-specific intensity normalization and parameter selection. NeuroImage Kelvin K. Leung, Matthew J. Clarkson, Jonathan W. Bartlett, Shona Clegg, Clifford R. Jack Jr., Michael W. Weiner, Nick C. Fox, Sébastien Ourselin
2009	J	`jnl`	Comparison of phantom and registration scaling corrections using the ADNI cohort. NeuroImage Matthew J. Clarkson, Sébastien Ourselin, Casper Nielsen, Kelvin K. Leung, Josephine Barnes, Jennifer L. Whitwell, Jeffrey L. Gunter, Derek L. G. Hill, Michael W. Weiner, Clifford R. Jack Jr., Nick C. Fox
2009	—	`conf`	Improved Maximum a Posteriori Cortical Segmentation by Iterative Relaxation of Priors. MICCAI (1) Manuel Jorge Cardoso, Matthew J. Clarkson, Gerard R. Ridgway, Marc Modat, Nick C. Fox, Sébastien Ourselin
2001	J	`jnl`	Using Photo-Consistency to Register 2D Optical Images of the Human Face to a 3D Surface Model. IEEE Trans. Pattern Anal. Mach. Intell. Matthew J. Clarkson, Daniel Rueckert, Derek L. G. Hill, David J. Hawkes
2000	B	`conf`	Multiple 2D video/3D medical image registration algorithm. Image Processing Matthew J. Clarkson, Daniel Rueckert, Derek L. G. Hill, David John Hawkes
2000	B	`conf`	Non-rigid registration using higher-order mutual information. Image Processing Daniel Rueckert, Matthew J. Clarkson, Derek L. G. Hill, David John Hawkes
2000	J	`jnl`	Stereo Augmented Reality in the Surgical Microscope. Presence Teleoperators Virtual Environ. Andrew P. King, Philip J. Edwards, Calvin R. Maurer Jr., Darryl A. de Cunha, Ronald P. Gaston, Matthew J. Clarkson, Derek L. G. Hill, David J. Hawkes, Michael R. Fenlon, Anthony J. Strong, Tim C. S. Cox, Michael J. Gleeson
2000	A	`conf`	Volume and Shape Preservation of Enhancing Lesions when Applying Non-rigid Registration to a Time Series of Contrast Enhancing MR Breast Images. MICCAI Christine Tanner, Julia A. Schnabel, Daniel Chung, Matthew J. Clarkson, Daniel Rueckert, Derek L. G. Hill, David J. Hawkes
1999	A	`conf`	Registration of Video Images to Tomographic Images by Optimising Mutual Information Using Texture Mapping. MICCAI Matthew J. Clarkson, Daniel Rueckert, Andrew P. King, Philip J. Edwards, Derek L. G. Hill, David J. Hawkes
1999	B	`conf`	Registration of multiple video images to preoperative CT for image-guided surgery. Image Processing Matthew J. Clarkson, Daniel Rueckert, Derek L. G. Hill, David John Hawkes