Matthew E. Ritchie

20 papers Journal 20
YearRankTypeTitle / Venue / Authors
2024 J jnl
Flexiplex: a versatile demultiplexer and search tool for omics data.
Bioinform.
Oliver Cheng, Min Hao Ling, Changqing Wang, Shuyi Wu, Matthew E. Ritchie, Jonathan Göke, Noorul Amin, Nadia M. Davidson
2021 J jnl
NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data.
PLoS Comput. Biol.
Shian Su, Quentin Gouil, Marnie E. Blewitt, Dianne Cook, Peter F. Hickey, Matthew E. Ritchie
2020 J jnl
CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods.
Bioinform.
Shian Su, Luyi Tian, Xueyi Dong, Peter F. Hickey, Saskia Freytag, Matthew E. Ritchie
2019 J jnl
BiocPkgTools: Toolkit for mining the
F1000Research
Shian Su, Vincent J. Carey, Lori A. Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean Davis
2018 J jnl
scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data.
PLoS Comput. Biol.
Luyi Tian, Shian Su, Xueyi Dong, Daniela Amann-Zalcenstein, Christine Biben, Azadeh Seidi, Douglas J. Hilton, Shalin H. Naik, Matthew E. Ritchie
2017 J jnl
Combining multiple tools outperforms individual methods in gene set enrichment analyses.
Bioinform.
Monther Alhamdoosh, Milica Ng, Nicholas J. Wilson, Julie M. Sheridan, Huy Huynh, Michael J. Wilson, Matthew E. Ritchie
2017 J jnl
Glimma: interactive graphics for gene expression analysis.
Bioinform.
Shian Su, Charity W. Law, Casey Ah-Cann, Marie-Liesse Asselin-Labat, Marnie E. Blewitt, Matthew E. Ritchie
2014 J jnl
KRLMM: an adaptive genotype calling method for common and low frequency variants.
BMC Bioinform.
Ruijie Liu, Zhiyin Dai, Meredith Yeager, Rafael A. Irizarry, Matthew E. Ritchie
2012 J jnl
Allele-specific expression analysis methods for high-density SNP microarray data.
Bioinform.
Ruijie Liu, Ana-Teresa Maia, Roslin Russell, Carlos Caldas, Bruce A. Ponder, Matthew E. Ritchie
2011 J jnl
BeadArray Expression Analysis Using Bioconductor.
PLoS Comput. Biol.
Matthew E. Ritchie, Mark J. Dunning, Mike L. Smith, Wei Shi, Andy G. Lynch
2011 J jnl
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips.
BMC Bioinform.
Matthew E. Ritchie, Ruijie Liu, Benilton S. Carvalho, Rafael A. Irizarry
2010 J jnl
Data analysis issues for allele-specific expression using Illumina's GoldenGate assay.
BMC Bioinform.
Matthew E. Ritchie, Matthew S. Forrest, Antigone S. Dimas, Caroline Daelemans, Emmanouil T. Dermitzakis, Panagiotis Deloukas, Simon Tavaré
2009 J jnl
Illumina WG-6 BeadChip strips should be normalized separately.
BMC Bioinform.
Wei Shi, Ashish Banerjee, Matthew E. Ritchie, Steve Gerondakis, Gordon K. Smyth
2009 J jnl
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.
Bioinform.
Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry
2009 J jnl
Swift: primary data analysis for the Illumina Solexa sequencing platform.
Bioinform.
Nava Whiteford, Tom Skelly, Christina Curtis, Matthew E. Ritchie, Andrea Löhr, Alexander Wait Zaranek, Irina I. Abnizova, Clive Brown
2008 J jnl
BASH: a tool for managing BeadArray spatial artefacts.
Bioinform.
Jonathan M. Cairns, Mark J. Dunning, Matthew E. Ritchie, Roslin Russell, Andy G. Lynch
2008 J jnl
Statistical issues in the analysis of Illumina data.
BMC Bioinform.
Mark J. Dunning, Nuno L. Barbosa-Morais, Andy G. Lynch, Simon Tavaré, Matthew E. Ritchie
2007 J jnl
A comparison of background correction methods for two-colour microarrays.
Bioinform.
Matthew E. Ritchie, Jeremy David Silver, Alicia Oshlack, Melissa Holmes, Dileepa S. Diyagama, Andrew J. Holloway, Gordon K. Smyth
2007 J jnl
beadarray: R classes and methods for Illumina bead-based data.
Bioinform.
Mark J. Dunning, Mike L. Smith, Matthew E. Ritchie, Simon Tavaré
2006 J jnl
Empirical array quality weights in the analysis of microarray data.
BMC Bioinform.
Matthew E. Ritchie, Dileepa S. Diyagama, Jody Neilson, Ryan van Laar, Alexander Dobrovic, Andrew J. Holloway, Gordon K. Smyth