Matthew Andres Moreno

38 papers A 1Journal 29Unranked 8

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A Scalable Trie Building Algorithm for High-Throughput Phyloanalysis of Wafer-Scale Digital Evolution Experiments. CoRR Vivaan Singhvi, Joey Wagner, Emily L. Dolson, Luis Zaman, Matthew Andres Moreno
2025	J	`jnl`	Downstream: efficient cross-platform algorithms for fixed-capacity stream downsampling. CoRR Connor Yang, Joey Wagner, Emily L. Dolson, Luis Zaman, Matthew Andres Moreno
2025	J	`jnl`	Ecology, Spatial Structure, and Selection Pressure Induce Strong Signatures in Phylogenetic Structure. Artif. Life Matthew Andres Moreno, Santiago Rodriguez Papa, Emily L. Dolson
2025	J	`jnl`	Extending a Phylogeny-based Method for Detecting Signatures of Multi-level Selection for Applications in Artificial Life. CoRR Matthew Andres Moreno, Sanaz Hasanzadeh Fard, Luis Zaman, Emily L. Dolson
2024	J	`jnl`	A Guide to Tracking Phylogenies in Parallel and Distributed Agent-based Evolution Models. CoRR Matthew Andres Moreno, Anika Ranjan, Emily L. Dolson, Luis Zaman
2024	J	`jnl`	Algorithms for Efficient, Compact Online Data Stream Curation. CoRR Matthew Andres Moreno, Santiago Rodriguez Papa, Emily L. Dolson
2024	J	`jnl`	Analysis of Phylogeny Tracking Algorithms for Serial and Multiprocess Applications. CoRR Matthew Andres Moreno, Santiago Rodriguez Papa, Emily L. Dolson
2024	J	`jnl`	Case Study of Novelty, Complexity, and Adaptation in a Multicellular System. CoRR Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria
2024	J	`jnl`	DendroPy 5: a mature Python library for phylogenetic computing. J. Open Source Softw. Matthew Andres Moreno, Mark T. Holder, Jeet Sukumaran
2024	J	`jnl`	Ecology, Spatial Structure, and Selection Pressure Induce Strong Signatures in Phylogenetic Structure. CoRR Matthew Andres Moreno, Santiago Rodriguez Papa, Emily L. Dolson
2024	J	`jnl`	Empirical: A scientific software library for research, education, and public engagement. J. Open Source Softw. Anya E. Vostinar, Alexander Lalejini, Charles Ofria, Emily L. Dolson, Matthew Andres Moreno
2024	J	`jnl`	Methods to Estimate Cryptic Sequence Complexity. CoRR Matthew Andres Moreno
2024	J	`jnl`	Phylotrack: C++ and Python libraries for in silico phylogenetic tracking. CoRR Emily L. Dolson, Santiago Rodriguez Papa, Matthew Andres Moreno
2024	—	`conf`	Runtime phylogenetic analysis enables extreme subsampling for test-based problems. GECCO Companion Alexander Lalejini, Marcos Sanson, Jack Garbus, Matthew Andres Moreno, Emily L. Dolson
2024	J	`jnl`	Runtime phylogenetic analysis enables extreme subsampling for test-based problems. CoRR Alexander Lalejini, Marcos Sanson, Jack Garbus, Matthew Andres Moreno, Emily L. Dolson
2024	J	`jnl`	Structured Downsampling for Fast, Memory-efficient Curation of Online Data Streams. CoRR Matthew Andres Moreno, Luis Zaman, Emily L. Dolson
2024	J	`jnl`	Trackable Agent-based Evolution Models at Wafer Scale. CoRR Matthew Andres Moreno, Connor Yang, Emily L. Dolson, Luis Zaman
2024	—	`conf`	Trackable Island-model Genetic Algorithms at Wafer Scale. GECCO Companion Matthew Andres Moreno, Connor Yang, Emily L. Dolson, Luis Zaman
2024	J	`jnl`	Trackable Island-model Genetic Algorithms at Wafer Scale. CoRR Matthew Andres Moreno, Connor Yang, Emily L. Dolson, Luis Zaman
2023	J	`jnl`	Matchmaker, matchmaker, make me a match: geometric, variational, and evolutionary implications of criteria for tag affinity. Genet. Program. Evolvable Mach. Matthew Andres Moreno, Alexander Lalejini, Charles Ofria
2023	—	`conf`	Methods for Rich Phylogenetic Inference Over Distributed Sexual Populations. GPTP Matthew Andres Moreno
2023	—	`conf`	Phylogeny-Informed Fitness Estimation for Test-Based Parent Selection. GPTP Alexander Lalejini, Matthew Andres Moreno, Jose Guadalupe Hernandez, Emily L. Dolson
2023	J	`jnl`	Phylogeny-informed fitness estimation. CoRR Alexander Lalejini, Matthew Andres Moreno, Jose Guadalupe Hernandez, Emily L. Dolson
2023	—	`conf`	Tag Affinity Criteria Influence Adaptive Evolution. GECCO Companion Matthew Andres Moreno, Alexander Lalejini, Charles Ofria
2022	J	`jnl`	Best-Effort Communication Improves Performance and Scales Robustly on Conventional Hardware. CoRR Matthew Andres Moreno, Charles Ofria
2022	—	`conf`	Hereditary stratigraphy: genome annotations to enable phylogenetic inference over distributed populations. GECCO Companion Matthew Andres Moreno, Emily L. Dolson, Charles Ofria
2022	—	`conf`	Tag-based module regulation for genetic programming. GECCO Companion Alexander Lalejini, Matthew Andres Moreno, Charles Ofria
2022	J	`jnl`	hstrat: a Python Package for phylogenetic inference on distributed digital evolution populations. J. Open Source Softw. Matthew Andres Moreno, Emily L. Dolson, Charles Ofria
2021	J	`jnl`	Conduit: A C++ Library for Best-effort High Performance Computing. CoRR Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria
2021	—	`conf`	Conduit: a C++ library for best-effort high performance computing. GECCO Companion Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria
2021	J	`jnl`	Exploring Evolved Multicellular Life Histories in a Open-Ended Digital Evolution System. CoRR Matthew Andres Moreno, Charles Ofria
2021	J	`jnl`	Matchmaker, Matchmaker, Make Me a Match: Geometric, Variational, and Evolutionary Implications of Criteria for Tag Affinity. CoRR Matthew Andres Moreno, Alexander Lalejini, Charles Ofria
2021	J	`jnl`	SignalGP-Lite: Event Driven Genetic Programming Library for Large-Scale Artificial Life Applications. CoRR Matthew Andres Moreno, Santiago Rodriguez Papa, Alexander Lalejini, Charles Ofria
2021	J	`jnl`	Tag-based regulation of modules in genetic programming improves context-dependent problem solving. Genet. Program. Evolvable Mach. Alexander Lalejini, Matthew Andres Moreno, Charles Ofria
2020	J	`jnl`	Tag-based Genetic Regulation for Genetic Programming. CoRR Alexander Lalejini, Matthew Andres Moreno, Charles Ofria
2019	J	`jnl`	Toward Open-Ended Fraternal Transitions in Individuality. Artif. Life Matthew Andres Moreno, Charles Ofria
2018	A	`conf`	Learning an evolvable genotype-phenotype mapping. GECCO Matthew Andres Moreno, Wolfgang Banzhaf, Charles Ofria
2018	J	`jnl`	Toward open-ended fraternal transitions in individuality. PeerJ Prepr. Matthew Andres Moreno, Charles Ofria