Matteo Comin

70 papers A 1B 3C 4Journal 36Unranked 24
YearRankTypeTitle / Venue / Authors
2025 — conf
DuoHash: Fast Hashing of Spaced Seeds with Application to Spaced K-mers Counting.
ICCABS
Leonardo Gemin, Cinzia Pizzi, Matteo Comin
2025 — conf
Fast and Succinct Compression of k-mer Sets with Plain Text Representation of Colored de Bruijn Graphs.
ICCABS
Enrico Rossignolo, Matteo Comin
2025 — conf
Machine Learning Methods for Phenotype Prediction from High-Dimensional, Low Population Aquaculture Data.
BIOSTEC (1)
Giovanni Faldani, Enrico Rossignolo, Eleonora Signor, Alessio Longo, Sara Faggion, Luca Bargelloni, Matteo Comin, Cinzia Pizzi
2024 J jnl
Enhanced Compression of
J. Comput. Biol.
Enrico Rossignolo, Matteo Comin
2024 J jnl
MISSH: Fast Hashing of Multiple Spaced Seeds.
IEEE ACM Trans. Comput. Biol. Bioinform.
Eleonora Mian, Enrico Petrucci, Cinzia Pizzi, Matteo Comin
2024 — conf
USTAR2: Fast and Succinct Representation of k-mer Sets Using De Bruijn Graphs.
BIOSTEC (1)
Enrico Rossignolo, Matteo Comin
2023 J jnl
ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs.
J. Comput. Biol.
Margherita Cavattoni, Matteo Comin
2023 — conf
Efficient Hashing of Multiple Spaced Seeds with Application.
BIOINFORMATICS
Eleonora Mian, Enrico Petrucci, Cinzia Pizzi, Matteo Comin
2023 — conf
USTAR: Improved Compression of k-mer Sets with Counters Using de Bruijn Graphs.
ISBRA
Enrico Rossignolo, Matteo Comin
2022 — conf
Efficient k-mer Indexing with Application to Mapping-free SNP Genotyping.
BIOINFORMATICS
Mattia Marcolin, Francesco Andreace, Matteo Comin
2022 J jnl
K2Mem: Discovering Discriminative K-mers From Sequencing Data for Metagenomic Reads Classification.
IEEE ACM Trans. Comput. Biol. Bioinform.
Davide Storato, Matteo Comin
2022 J jnl
SPRISS: approximating frequent
Bioinform.
Diego Santoro, Leonardo Pellegrina, Matteo Comin, Fabio Vandin
2021 — conf
Boosting Metagenomic Classification with Reads Overlap Graphs.
ISBRA
Margherita Cavattoni, Matteo Comin
2021 J jnl
Comparison of microbiome samples: methods and computational challenges.
Briefings Bioinform.
Matteo Comin, Barbara Di Camillo, Cinzia Pizzi, Fabio Vandin
2021 J jnl
Fast alignment of reads to a variation graph with application to SNP detection.
J. Integr. Bioinform.
Maurilio Monsu, Matteo Comin
2021 J jnl
MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics.
J. Comput. Biol.
Francesco Andreace, Cinzia Pizzi, Matteo Comin
2021 J jnl
Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21).
J. Integr. Bioinform.
Jens Allmer, Mourad Elloumi, Matteo Comin, Ralf Hofestädt
2020 — conf
Improving Metagenomic Classification Using Discriminative k-mers from Sequencing Data.
ISBRA
Davide Storato, Matteo Comin
2020 J jnl
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing.
J. Comput. Biol.
Enrico Petrucci, Laurent Noé, Cinzia Pizzi, Matteo Comin
2020 — conf
MetaProb 2: Improving Unsupervised Metagenomic Binning with Efficient Reads Assembly Using Minimizers.
ICCABS
Francesco Andreace, Cinzia Pizzi, Matteo Comin
2019 J jnl
Better quality score compression through sequence-based quality smoothing.
BMC Bioinform.
Yoshihiro Shibuya, Matteo Comin
2019 — conf
Indexing k-mers in Linear-space for Quality Value Compression.
BIOINFORMATICS
Yoshihiro Shibuya, Matteo Comin
2019 J jnl
Indexing k-mers in linear space for quality value compression.
J. Bioinform. Comput. Biol.
Yoshihiro Shibuya, Matteo Comin
2019 — conf
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing.
ISBRA
Enrico Petrucci, Laurent Noé, Cinzia Pizzi, Matteo Comin
2019 J jnl
MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage.
BMC Bioinform.
Jia Qian, Matteo Comin
2018 — conf
Data-Driven Smart Bike-Sharing System by Implementing Machine Learning Algorithms.
ES
Jia Qian, Matteo Comin, Livio Pianura
2018 J jnl
FSH: fast spaced seed hashing exploiting adjacent hashes.
Algorithms Mol. Biol.
Samuele Girotto, Matteo Comin, Cinzia Pizzi
2017 — ch.
Assembly-Free Techniques for NGS Data.
Algorithms for Next-Generation Sequencing Data
Matteo Comin, Michele Schimd
2017 C conf
Binning metagenomic reads with probabilistic sequence signatures based on spaced seeds.
CIBCB
Samuele Girotto, Matteo Comin, Cinzia Pizzi
2017 C conf
Fast Spaced Seed Hashing.
WABI
Samuele Girotto, Matteo Comin, Cinzia Pizzi
2017 — conf
Fast and Sensitive Classification of Short Metagenomic Reads with SKraken.
BIOSTEC (Selected Papers)
Jia Qian, Davide Marchiori, Matteo Comin
2017 J jnl
Metagenomic reads binning with spaced seeds.
Theor. Comput. Sci.
Samuele Girotto, Matteo Comin, Cinzia Pizzi
2017 — conf
SKraken: Fast and Sensitive Classification of Short Metagenomic Reads based on Filtering Uninformative k-mers.
BIOINFORMATICS
Davide Marchiori, Matteo Comin
2016 — conf
Higher recall in metagenomic sequence classification exploiting Overlapping Reads.
ICCABS
Samuele Girotto, Matteo Comin, Cinzia Pizzi
2016 J jnl
MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
Bioinform.
Samuele Girotto, Cinzia Pizzi, Matteo Comin
2016 J jnl
On the comparison of regulatory sequences with multiple resolution Entropic Profiles.
BMC Bioinform.
Matteo Comin, Morris Antonello
2015 J jnl
Clustering of reads with alignment-free measures and quality values.
Algorithms Mol. Biol.
Matteo Comin, Andrea Leoni, Michele Schimd
2015 — conf
Fast Alignment-free Comparison for Regulatory Sequences using Multiple Resolution Entropic Profiles.
BIOINFORMATICS
Matteo Comin, Morris Antonelli
2014 J jnl
Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns.
BMC Bioinform.
Matteo Comin, Michele Schimd
2014 J jnl
Beyond Fixed-Resolution Alignment-Free Measures for Mammalian Enhancers Sequence Comparison.
IEEE ACM Trans. Comput. Biol. Bioinform.
Matteo Comin, Davide Verzotto
2014 J jnl
Fast Entropic Profiler: An InformationTheoretic Approach for the Discovery ofPatterns in Genomes.
IEEE ACM Trans. Comput. Biol. Bioinform.
Matteo Comin, Morris Antonello
2014 J jnl
Parallel Continuous Flow: A Parallel Suffix Tree Construction Tool for Whole Genomes.
J. Comput. Biol.
Matteo Comin, Montse Farreras
2014 — ed.
Pattern Recognition in Bioinformatics - 9th IAPR International Conference, PRIB 2014, Stockholm, Sweden, August 21-23, 2014. Proceedings
PRIB
Matteo Comin, Lukas Käll, Elena Marchiori, Alioune Ngom, Jagath C. Rajapakse
2014 C conf
QCluster: Extending Alignment-Free Measures with Quality Values for Reads Clustering.
WABI
Matteo Comin, Andrea Leoni, Michele Schimd
2013 C conf
Efficient parallel construction of suffix trees for genomes larger than main memory.
EuroMPI
Matteo Comin, Montse Farreras
2013 — conf
Fast Computation of Entropic Profiles for the Detection of Conservation in Genomes.
PRIB
Matteo Comin, Morris Antonello
2013 J jnl
Filtering Degenerate Patterns with Application to Protein Sequence Analysis.
Algorithms
Matteo Comin, Davide Verzotto
2013 — conf
Reducing the Space of Degenerate Patterns in Protein Remote Homology Detection.
DEXA Workshops
Matteo Comin, Davide Verzotto
2013 J jnl
Ultrametric networks: a new tool for phylogenetic analysis.
Algorithms Mol. Biol.
Alberto Apostolico, Matteo Comin, Andreas W. M. Dress, Laxmi Parida
2012 J jnl
Alignment-free phylogeny of whole genomes using underlying subwords.
Algorithms Mol. Biol.
Matteo Comin, Davide Verzotto
2012 — conf
Whole-Genome Phylogeny by Virtue of Unic Subwords.
DEXA Workshops
Matteo Comin, Davide Verzotto
2011 J jnl
The Irredundant Class Method for Remote Homology Detection of Protein Sequences.
J. Comput. Biol.
Matteo Comin, Davide Verzotto
2010 J jnl
Classification of protein sequences by means of irredundant patterns.
BMC Bioinform.
Matteo Comin, Davide Verzotto
2010 — conf
Remote Homology Detection of Protein Sequences.
Structure Discovery in Biology: Motifs, Networks & Phylogenies
Matteo Comin, Davide Verzotto
2010 J jnl
VARUN: Discovering Extensible Motifs under Saturation Constraints.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alberto Apostolico, Matteo Comin, Laxmi Parida
2009 J jnl
Binding Balls: Fast Detection of Binding Sites Using a Property of Spherical Fourier Transform.
J. Comput. Biol.
Matteo Comin, Concettina Guerra, Frank Dellaert
2008 J jnl
Detection of subtle variations as consensus motifs.
Theor. Comput. Sci.
Matteo Comin, Laxmi Parida
2008 J jnl
Mining Overrepresented 3D Patterns of Secondary Structures in proteins.
J. Bioinform. Comput. Biol.
Matteo Comin, Concettina Guerra, Giuseppe Zanotti
2007 J jnl
Algorithmic re-structuring and data replication for protein structure comparison on a GRID.
Future Gener. Comput. Syst.
Giovanni Ciriello, Matteo Comin, Concettina Guerra
2007 B conf
Subtle Motif Discovery for Detection of DNA Regulatory Sites.
APBC
Matteo Comin, Laxmi Parida
2006 A conf
Application re-structuring and data management on a grid environment: a case study for bioinformatics.
IPDPS
Giovanni Ciriello, Matteo Comin, Concettina Guerra
2006 — conf
Bridging Lossy and Lossless Compression by Motif Pattern Discovery.
GTIT-C
Alberto Apostolico, Matteo Comin, Laxmi Parida
2006 J jnl
Mining, compressing and classifying with extensible motifs.
Algorithms Mol. Biol.
Alberto Apostolico, Matteo Comin, Laxmi Parida
2005 J jnl
Bridging Lossy and Lossless Compression by Motif Pattern Discovery.
Electron. Notes Discret. Math.
Alberto Apostolico, Matteo Comin, Laxmi Parida
2005 — conf
Conservative extraction of over-represented extensible motifs.
ISMB (Supplement of Bioinformatics)
Alberto Apostolico, Matteo Comin, Laxmi Parida
2005 B conf
Off-Line Compression by Extensible Motifs.
DCC
Alberto Apostolico, Matteo Comin, Laxmi Parida
2004 J jnl
Grid Deployment Of Bioinformatics Applications: A Case Study In Protein Similarity Determination.
Parallel Process. Lett.
Matteo Comin, Carlo Ferrari, Concettina Guerra
2004 — conf
Modelling a Protein Structure Comparison Application on the Grid Using PROTEUS.
SAG
Mario Cannataro, Matteo Comin, Carlo Ferrari, Concettina Guerra, Antonella Guzzo, Pierangelo Veltri
2004 B conf
Motifs in Ziv-Lempel-Welch Clef.
Data Compression Conference
Alberto Apostolico, Matteo Comin, Laxmi Parida
2004 J jnl
PROuST: A Comparison Method of Three-Dimensional Structures of Proteins Using Indexing Techniques.
J. Comput. Biol.
Matteo Comin, Concettina Guerra, Giuseppe Zanotti