Mathias Prokop

62 papers B 8Journal 38Unranked 16

Year	Rank	Type	Title / Venue / Authors
2026	—	`conf`	Abstract: Leveraging Open-source Language Models for Clinical Information Extraction - A Study in Resource-constrained Healthcare Settings. Bildverarbeitung für die Medizin Luc Builtjes, Joeran Bosma, Mathias Prokop, Bram van Ginneken, Alessa Hering
2026	—	`conf`	Data-driven Model Adaptation Enhances Lesion Segmentation - ULS+. Bildverarbeitung für die Medizin Rianne A. Weber, Niels Rocholl, Max J. J. de Grauw, Mathias Prokop, Ewoud J. Smit, Alessa Hering
2026	J	`jnl`	Designing UNICORN: a Unified Benchmark for Imaging in Computational Pathology, Radiology, and Natural Language. CoRR Michelle Stegeman, Lena Philipp, Fennie van der Graaf, Marina D'Amato, Clément Grisi, Luc Builtjes, Joeran S. Bosma, Judith Lefkes, Rianne A. Weber, James A. Meakin, Thomas Koopman, Anne Mickan, Mathias Prokop, Ewoud J. Smit, Geert Litjens, Jeroen van der Laak, Bram van Ginneken, Maarten de Rooij, Henkjan Huisman, Colin Jacobs, Francesco Ciompi, Alessa Hering
2026	J	`jnl`	ULS+: Data-driven Model Adaptation Enhances Lesion Segmentation. CoRR Rianne A. Weber, Niels Rocholl, Max De Grauw, Mathias Prokop, Ewoud J. Smit, Alessa Hering
2025	J	`jnl`	Divide to Conquer: A Field Decomposition Approach for Multi-Organ Whole-Body CT Image Registration. CoRR Xuan Loc Pham, Mathias Prokop, Bram van Ginneken, Alessa Hering
2025	J	`jnl`	Leveraging Open-Source Large Language Models for Clinical Information Extraction in Resource-Constrained Settings. CoRR Luc Builtjes, Joeran S. Bosma, Mathias Prokop, Bram van Ginneken, Alessa Hering
2025	J	`jnl`	Robust Kidney Abnormality Segmentation: A Validation Study of an AI-Based Framework. CoRR Sarah de Boer, Hartmut Häntze, Kiran Vaidhya Venkadesh, Myrthe A. D. Buser, Gabriel Efrain Humpire Mamani, Lina Xu, Lisa C. Adams, Jawed Nawabi, Keno K. Bressem, Bram van Ginneken, Mathias Prokop, Alessa Hering
2025	J	`jnl`	The ULS23 challenge: A baseline model and benchmark dataset for 3D universal lesion segmentation in computed tomography. Medical Image Anal. M. J. J. de Grauw, Ernst Th. Scholten, Ewoud J. Smit, M. J. C. M. Rutten, Mathias Prokop, Bram van Ginneken, Alessa Hering
2025	J	`jnl`	TotalRegistrator: Towards a Lightweight Foundation Model for CT Image Registration. CoRR Xuan Loc Pham, Gwendolyn Vuurberg, Marjan Doppen, Joey Roosen, Tip Stille, Thi Quynh Ha, Thuy Duong Quach, Quoc Vu Dang, Manh Ha Luu, Ewoud J. Smit, Hong Son Mai, Mattias P. Heinrich, Bram van Ginneken, Mathias Prokop, Alessa Hering
2025	J	`jnl`	Towards safe and reliable deep learning for lung nodule malignancy estimation using out-of-distribution detection. Comput. Biol. Medicine Dre Peeters, Kiran Vaidhya Venkadesh, Renate Dinnessen, Zaigham Saghir, Ernst Th. Scholten, Rozemarijn Vliegenthart, Mathias Prokop, Colin Jacobs
2025	—	`conf`	Unstable Prompts, Unreliable Segmentations: A Challenge for Longitudinal Lesion Analysis. LMID@MICCAI Niels Rocholl, Ewoud J. Smit, Mathias Prokop, Alessa Hering
2025	J	`jnl`	Unstable Prompts, Unreliable Segmentations: A Challenge for Longitudinal Lesion Analysis. CoRR Niels Rocholl, Ewoud J. Smit, Mathias Prokop, Alessa Hering
2024	J	`jnl`	Explainable machine learning model based on clinical factors for predicting the disappearance of indeterminate pulmonary nodules. Comput. Biol. Medicine Jingxuan Wang, Nikos Sourlos, Marjolein Heuvelmans, Mathias Prokop, Rozemarijn Vliegenthart, Peter M. A. van Ooijen
2024	J	`jnl`	MRSegmentator: Robust Multi-Modality Segmentation of 40 Classes in MRI and CT Sequences. CoRR Hartmut Häntze, Lina Xu, Felix J. Dorfner, Leonhard Donle, Daniel Truhn, Hugo J. W. L. Aerts, Mathias Prokop, Bram van Ginneken, Alessa Hering, Lisa C. Adams, Keno K. Bressem
2024	J	`jnl`	The ULS23 Challenge: a Baseline Model and Benchmark Dataset for 3D Universal Lesion Segmentation in Computed Tomography. CoRR Max De Grauw, Ernst Th. Scholten, Ewoud J. Smit, Matthieu Rutten, Mathias Prokop, Bram van Ginneken, Alessa Hering
2023	J	`jnl`	Kidney abnormality segmentation in thorax-abdomen CT scans. CoRR Gabriel Efrain Humpire Mamani, Nikolas Lessmann, Ernst Th. Scholten, Mathias Prokop, Colin Jacobs, Bram van Ginneken
2023	J	`jnl`	Transfer learning from a sparsely annotated dataset of 3D medical images. CoRR Gabriel Efrain Humpire Mamani, Colin Jacobs, Mathias Prokop, Bram van Ginneken, Nikolas Lessmann
2021	J	`jnl`	Automated Estimation of Total Lung Volume using Chest Radiographs and Deep Learning. CoRR Ecem Sogancioglu, Keelin Murphy, Ernst Th. Scholten, Luuk H. Boulogne, Mathias Prokop, Bram van Ginneken
2020	J	`jnl`	Image-level detection of arterial occlusions in 4D-CTA of acute stroke patients using deep learning. Medical Image Anal. Midas Meijs, Frederick J. A. Meijer, Mathias Prokop, Bram van Ginneken, Rashindra Manniesing
2020	J	`jnl`	Stacked Bidirectional Convolutional LSTMs for Deriving 3D Non-Contrast CT From Spatiotemporal 4D CT. IEEE Trans. Medical Imaging Sil C. van de Leemput, Mathias Prokop, Bram van Ginneken, Rashindra Manniesing
2019	J	`jnl`	Image Level Training and Prediction: Intracranial Hemorrhage Identification in 3D Non-Contrast CT. IEEE Access Ajay Patel, Sil C. van de Leemput, Mathias Prokop, Bram van Ginneken, Rashindra Manniesing
2018	—	`conf`	Quantitative CT based radiomics as predictor of resectability of pancreatic adenocarcinoma. Computer-Aided Diagnosis Joost van der Putten, Svitlana Zinger, Fons van der Sommen, Peter H. N. de With, Mathias Prokop, John Hermans
2017	—	`conf`	Automatic cerebrospinal fluid segmentation in non-contrast CT images using a 3D convolutional network. Computer-Aided Diagnosis Ajay Patel, Sil C. van de Leemput, Mathias Prokop, Bram van Ginneken, Rashindra Manniesing
2017	J	`jnl`	Robust cranial cavity segmentation in CT and CT perfusion images of trauma and suspected stroke patients. Medical Image Anal. Ajay Patel, Bram van Ginneken, Frederick J. A. Meijer, Ewoud J. van Dijk, Mathias Prokop, Rashindra Manniesing
2017	J	`jnl`	Validation, comparison, and combination of algorithms for automatic detection of pulmonary nodules in computed tomography images: The LUNA16 challenge. Medical Image Anal. Arnaud Arindra Adiyoso Setio, Alberto Traverso, Thomas de Bel, Moira S. N. Berens, Cas van den Bogaard, Piergiorgio Cerello, Hao Chen, Qi Dou, Maria Evelina Fantacci, Bram Geurts, Robbert van der Gugten, Pheng-Ann Heng, Bart Jansen, Michael M. J. de Kaste, Valentin Kotov, Jack Yu-Hung Lin, Jeroen T. M. C. Manders, Alexander Sóñora-Mengana, Juan Carlos García-Naranjo, Evgenia Papavasileiou, Mathias Prokop
2016	B	`conf`	Lung iodine mapping by subtraction with image registration allowing for tissue sliding. Image Processing Brian Mohr, Monique Brink, Luuk J. Oostveen, Joanne D. Schuijf, Mathias Prokop
2016	J	`jnl`	Towards automatic pulmonary nodule management in lung cancer screening with deep learning. CoRR Francesco Ciompi, Kaman Chung, Sarah J. van Riel, Arnaud Arindra Adiyoso Setio, Paul K. Gerke, Colin Jacobs, Ernst Th. Scholten, Cornelia Schaefer-Prokop, Mathilde M. W. Wille, Alfonso Marchiano, Ugo Pastorino, Mathias Prokop, Bram van Ginneken
2016	J	`jnl`	Validation, comparison, and combination of algorithms for automatic detection of pulmonary nodules in computed tomography images: the LUNA16 challenge. CoRR Arnaud Arindra Adiyoso Setio, Alberto Traverso, Thomas de Bel, Moira S. N. Berens, Cas van den Bogaard, Piergiorgio Cerello, Hao Chen, Qi Dou, Maria Evelina Fantacci, Bram Geurts, Robbert van der Gugten, Pheng-Ann Heng, Bart Jansen, Michael M. J. de Kaste, Valentin Kotov, Jack Yu-Hung Lin, Jeroen T. M. C. Manders, Alexander Sóñora-Mengana, Juan Carlos García-Naranjo, Mathias Prokop, Marco Saletta, Cornelia Schaefer-Prokop, Ernst Th. Scholten, Luuk Scholten, Miranda M. Snoeren, Ernesto Lopez Torres, Jef Vandemeulebroucke, Nicole Walasek, Guido C. A. Zuidhof, Bram van Ginneken, Colin Jacobs
2015	J	`jnl`	Automatic classification of pulmonary peri-fissural nodules in computed tomography using an ensemble of 2D views and a convolutional neural network out-of-the-box. Medical Image Anal. Francesco Ciompi, Bartjan de Hoop, Sarah J. van Riel, Kaman Chung, Ernst Th. Scholten, Matthijs Oudkerk, Pim A. de Jong, Mathias Prokop, Bram van Ginneken
2015	—	`conf`	Automatic detection of spiculation of pulmonary nodules in computed tomography images. Computer-Aided Diagnosis Francesco Ciompi, Colin Jacobs, Ernst Th. Scholten, Sarah J. van Riel, Mathilde M. W. Wille, Mathias Prokop, Bram van Ginneken
2015	J	`jnl`	Bag-of-Frequencies: A Descriptor of Pulmonary Nodules in Computed Tomography Images. IEEE Trans. Medical Imaging Francesco Ciompi, Colin Jacobs, Ernst Th. Scholten, Mathilde M. W. Wille, Pim A. de Jong, Mathias Prokop, Bram van Ginneken
2014	—	`conf`	Automated detection and quantification of micronodules in thoracic CT scans to identify subjects at risk for silicosis. Computer-Aided Diagnosis Colin Jacobs, S. H. T. T. Opdam, Eva M. van Rikxoort, O. M. Mets, J. Rooyackers, Pim A. de Jong, Mathias Prokop, Bram van Ginneken
2014	J	`jnl`	Automatic detection of subsolid pulmonary nodules in thoracic computed tomography images. Medical Image Anal. Colin Jacobs, Eva M. van Rikxoort, Thorsten Twellmann, Ernst Th. Scholten, Pim A. de Jong, Jan-Martin Kuhnigk, Matthijs Oudkerk, Harry J. de Koning, Mathias Prokop, Cornelia Schaefer-Prokop, Bram van Ginneken
2014	B	`conf`	Computed tomography lung iodine contrast mapping by image registration and subtraction. Image Processing Keith A. Goatman, Costas Plakas, Joanne D. Schuijf, Erin Beveridge, Mathias Prokop
2014	—	`conf`	Using the Fourth Dimension to Distinguish Between Structures for Anisotropic Diffusion Filtering in 4D CT Perfusion Scans. STIA Adriënne M. Mendrik, Evert-Jan Vonken, Theo Witkamp, Mathias Prokop, Bram van Ginneken, Max A. Viergever
2013	B	`conf`	A pattern recognition framework for vessel segmentation in 4D CT of the brain. Image Processing Jan-Jurre Mordang, Marcel T. H. Oei, Rieneke van den Boom, Ewoud J. Smit, Mathias Prokop, Bram van Ginneken, Rashindra Manniesing
2013	B	`conf`	Automated artery and vein detection in 4D-CT data with an unsupervised classification algorithm of the time intensity curves. Image Processing Hendrik O. A. Laue, Marcel T. H. Oei, L. Chen, Ina Nora Kompan, Horst K. Hahn, Mathias Prokop, Rashindra Manniesing
2012	J	`jnl`	Automatic Coronary Calcium Scoring in Low-Dose Chest Computed Tomography. IEEE Trans. Medical Imaging Ivana Isgum, Mathias Prokop, Meindert Niemeijer, Max A. Viergever, Bram van Ginneken
2012	B	`conf`	Brain tissue segmentation in 4D CT using voxel classification. Image Processing Rieneke van den Boom, Marcel T. H. Oei, Sven Lafebre, Luuk J. Oostveen, Frederick J. A. Meijer, Stefan C. A. Steens, Mathias Prokop, Bram van Ginneken, Rashindra Manniesing
2012	J	`jnl`	Extraction of Airways From CT (EXACT'09). IEEE Trans. Medical Imaging Pechin Lo, Bram van Ginneken, Joseph M. Reinhardt, Tarunashree Yavarna, Pim A. de Jong, Benjamin Irving, Catalin I. Fetita, Margarete Ortner, Romulo Pinho, Jan Sijbers, Marco Feuerstein, Anna Fabijanska, Christian Bauer, Reinhard Beichel, Carlos S. Mendoza, Rafael Wiemker, Jaesung Lee, Anthony P. Reeves, Silvia Born, Oliver Weinheimer, Eva M. van Rikxoort, Juerg Tschirren, Kensaku Mori, Benjamin Odry, David P. Naidich, Ieneke Hartmann, Eric A. Hoffman, Mathias Prokop, Jesper Johannes Holst Pedersen, Marleen de Bruijne
2011	J	`jnl`	On Combining Computer-Aided Detection Systems. IEEE Trans. Medical Imaging Meindert Niemeijer, Marco Loog, Michael D. Abràmoff, Max A. Viergever, Mathias Prokop, Bram van Ginneken
2010	J	`jnl`	Automatic Segmentation of Pulmonary Lobes Robust Against Incomplete Fissures. IEEE Trans. Medical Imaging Eva M. van Rikxoort, Mathias Prokop, Bartjan de Hoop, Max A. Viergever, Josien P. W. Pluim, Bram van Ginneken
2010	—	`conf`	Automatic coronary calcium scoring in low-dose non-ECG-synchronized thoracic CT scans. Computer-Aided Diagnosis Ivana Isgum, Mathias Prokop, Peter C. Jacobs, Martijn J. Gondrie, Willem P. Th. M. Mali, Max A. Viergever, Bram van Ginneken
2010	—	`conf`	Cardiac left atrium CT image segmentation for ablation guidance. ISBI Marc M. J. Koppert, Peter M. J. Rongen, Mathias Prokop, Bart M. ter Haar Romeny, Hans C. van Assen
2010	J	`jnl`	Comparing and combining algorithms for computer-aided detection of pulmonary nodules in computed tomography scans: The ANODE09 study. Medical Image Anal. Bram van Ginneken, Samuel G. Armato III, Bartjan de Hoop, Saskia van Amelsvoort-van de Vorst, Thomas Duindam, Meindert Niemeijer, Keelin Murphy, Arnold M. R. Schilham, Alessandra Retico, Maria Evelina Fantacci, Niccolò Camarlinghi, Francesco Bagagli, Ilaria Gori, Takeshi Hara, Hiroshi Fujita, Gianfranco Gargano, Roberto Bellotti, Sabina Sonia Tangaro, Lourdes Bolanos, Francesco De Carlo, Piergiorgio Cerello, Sorin Cristian Cheran, Ernesto Lopez Torres, Mathias Prokop
2010	—	`conf`	Interactive annotation of textures in thoracic CT scans. Computer-Aided Diagnosis Thessa T. J. P. Kockelkorn, Pim A. de Jong, Hester A. Gietema, Jan C. Grutters, Mathias Prokop, Bram van Ginneken
2010	B	`conf`	Noise filtering in thin-slice 4D cerebral CT perfusion scans. Image Processing Adriënne Mendrik, Evert-Jan Vonken, Jan-Willem Dankbaar, Mathias Prokop, Bram van Ginneken
2009	J	`jnl`	A large-scale evaluation of automatic pulmonary nodule detection in chest CT using local image features and k-nearest-neighbour classification. Medical Image Anal. Keelin Murphy, Bram van Ginneken, Arnold M. R. Schilham, Bartjan de Hoop, H. A. Gietema, Mathias Prokop
2009	J	`jnl`	Automatic Segmentation of Pulmonary Segments From Volumetric Chest CT Scans. IEEE Trans. Medical Imaging Eva M. van Rikxoort, Bartjan de Hoop, Saskia van de Vorst, Mathias Prokop, Bram van Ginneken
2009	—	`conf`	Automatic Segmentation of the Pulmonary Lobes from Fissures, Airways, and Lung Borders: Evaluation of Robustness against Missing Data. MICCAI (1) Eva M. van Rikxoort, Mathias Prokop, Bartjan de Hoop, Max A. Viergever, Josien P. W. Pluim, Bram van Ginneken
2009	J	`jnl`	Multi-Atlas-Based Segmentation With Local Decision Fusion - Application to Cardiac and Aortic Segmentation in CT Scans. IEEE Trans. Medical Imaging Ivana Isgum, Marius Staring, Annemarieke Rutten, Mathias Prokop, Max A. Viergever, Bram van Ginneken
2009	B	`conf`	Segmentation of arteries and veins on 4D CT perfusion scans for constructing arteriograms and venograms. Image Processing Adriënne Mendrik, Evert-Jan Vonken, Annet Waaijer, Ewoud J. Smit, Mathias Prokop, Bram van Ginneken
2008	—	`conf`	Automated detection of nodules attached to the pleural and mediastinal surface in low-dose CT scans. Computer-Aided Diagnosis Bram van Ginneken, Andre Tan, Keelin Murphy, Bart-Jan de Hoop, Mathias Prokop
2008	J	`jnl`	Fast Noise Reduction in Computed Tomography for Improved 3-D Visualization. IEEE Trans. Medical Imaging Michiel Schaap, Arnold M. R. Schilham, Karel J. Zuiderveld, Mathias Prokop, Evert-Jan Vonken, Wiro J. Niessen
2008	J	`jnl`	Supervised Enhancement Filters: Application to Fissure Detection in Chest CT Scans. IEEE Trans. Medical Imaging Eva M. van Rikxoort, Bram van Ginneken, M. A. J. Klik, Mathias Prokop
2007	—	`conf`	Automated detection of pulmonary nodules from low-dose computed tomography scans using a two-stage classification system based on local image features. Computer-Aided Diagnosis Keelin Murphy, Arnold M. R. Schilham, Hester A. Gietema, Mathias Prokop, Bram van Ginneken
2006	J	`jnl`	Computer analysis of computed tomography scans of the lung: a survey. IEEE Trans. Medical Imaging Ingrid Sluimer, Arnold M. R. Schilham, Mathias Prokop, Bram van Ginneken
2006	—	`conf`	Improved classification of pulmonary nodules by automated detection of benign subpleural lymph nodes. ISBI M. A. J. Klik, Eva M. van Rikxoort, Joost F. Peters, H. A. Gietema, Mathias Prokop, Bram van Ginneken
2006	J	`jnl`	Local noise weighted filtering for emphysema scoring of low-dose CT images. IEEE Trans. Medical Imaging Arnold M. R. Schilham, Bram van Ginneken, H. A. Gietema, Mathias Prokop
2005	B	`conf`	Local noise reduction for emphysema scoring in low-dose CT images. Image Processing Arnold M. R. Schilham, Mathias Prokop, Hester A. Gietema, Bram van Ginneken
2005	J	`jnl`	Toward Automated Segmentation of the Pathological Lung in CT. IEEE Trans. Medical Imaging Ingrid Sluimer, Mathias Prokop, Bram van Ginneken
2004	—	`conf`	A Pattern Recognition Approach to Automated Coronary Calcium Scoring. ICPR (3) Ivana Isgum, Bram van Ginneken, Mathias Prokop