Matej Oresic

25 papers Journal 17Unranked 8
YearRankTypeTitle / Venue / Authors
2021 J jnl
Deep learning meets metabolomics: a methodological perspective.
Briefings Bioinform.
Partho Sen, Santosh Lamichhane, Vivek Bhakta Mathema, Aidan J. McGlinchey, Alex M. Dickens, Sakda Khoomrung, Matej Oresic
2015 J jnl
Self-organization and missing values in SOM and GTM.
Neurocomputing
Tommi Vatanen, Maria Osmala, Tapani Raiko, Krista Lagus, Marko Sysi-Aho, Matej Oresic, Timo Honkela, Harri Lähdesmäki
2014 J jnl
Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae.
BMC Syst. Biol.
Erno Lindfors, Paula Jouhten, Merja Oja, Eija Rintala, Matej Oresic, Merja Penttilä
2011 J jnl
Compartmentation of glycogen metabolism revealed from
BMC Syst. Biol.
Igor Marín de Mas, Vitaly A. Selivanov, Silvia Marin, Josep Roca, Matej Oresic, Loranne Agius, Marta Cascante
2011 — conf
Cross-Species Translation of Multi-way Biomarkers.
ICANN (1)
Tommi Suvitaival, Ilkka Huopaniemi, Matej Oresic, Samuel Kaski
2011 J jnl
MPEA - metabolite pathway enrichment analysis.
Bioinform.
Matti Kankainen, Peddinti V. Gopalacharyulu, Liisa Holm, Matej Oresic
2011 J jnl
Matching samples of multiple views.
Data Min. Knowl. Discov.
Abhishek Tripathi, Arto Klami, Matej Oresic, Samuel Kaski
2011 J jnl
Metabolic Regulation in Progression to Autoimmune Diabetes.
PLoS Comput. Biol.
Marko Sysi-Aho, Andrey Ermolov, Peddinti V. Gopalacharyulu, Abhishek Tripathi, Tuulikki Seppänen-Laakso, Johanna Maukonen, Ismo Mattila, Suvi T. Ruohonen, Laura Vähätalo, Laxman Yetukuri, Taina Härkönen, Erno Lindfors, Janne Nikkilä, Jorma Ilonen, Olli Simell, Maria Saarela, Mikael Knip, Samuel Kaski, Eriika Savontaus, Matej Oresic
2010 — conf
Graphical Multi-way Models.
ECML/PKDD (1)
Ilkka Huopaniemi, Tommi Suvitaival, Matej Oresic, Samuel Kaski
2010 — conf
METAtarget - Extracting Key Enzymes of Metabolic Regulation from Highthroughput Metabolomics Data using KEGG REACTION Information.
GCB
Jan Budczies, Carsten Denkert, Berit M. Müller, Scarlet F. Brockmöller, Manfred Dietel, Jules L. Griffin, Matej Oresic, Oliver Fiehn
2010 J jnl
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data.
BMC Bioinform.
Tomás Pluskal, Sandra Castillo, Alejandro Villar-Briones, Matej Oresic
2010 J jnl
Multivariate multi-way analysis of multi-source data.
Bioinform.
Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski
2010 — conf
Searching for Linear Dependencies between Heart Magnetic Resonance Images and Lipid Profiles.
Algorithms and Applications
Marko Sysi-Aho, Juha Koikkalainen, Jyrki Lötjönen, Tuulikki Seppänen-Laakso, Hans Söderlund, Tiina Heliö, Matej Oresic
2009 — conf
Two-Way Analysis of High-Dimensional Collinear Data.
ECML/PKDD (1)
Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski
2009 J jnl
Two-way analysis of high-dimensional collinear data.
Data Min. Knowl. Discov.
Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski
2008 J jnl
An integrative approach for biological data mining and visualisation.
Int. J. Data Min. Bioinform.
Peddinti V. Gopalacharyulu, Erno Lindfors, Jarkko Miettinen, Catherine Bounsaythip, Matej Oresic
2007 J jnl
Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis.
BMC Syst. Biol.
Laxman Yetukuri, Mikko Katajamaa, Gema Medina-Gómez, Tuulikki Seppänen-Laakso, Antonio Vidal-Puig, Matej Oresic
2007 — conf
Exploring the lipoprotein composition using Bayesian regression on serum lipidomic profiles.
ISMB/ECCB (Supplement of Bioinformatics)
Marko Sysi-Aho, Aki Vehtari, Vidya R. Velagapudi, Jukka Westerbacka, Laxman Yetukuri, Robert Bergholm, Marja-Riitta Taskinen, Hannele Yki-Järvinen, Matej Oresic
2007 J jnl
Normalization method for metabolomics data using optimal selection of multiple internal standards.
BMC Bioinform.
Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Oresic
2007 J jnl
Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process.
Bioinform.
Laura Elo, Henna Järvenpää, Matej Oresic, Riitta Lahesmaa, Tero Aittokallio
2007 J jnl
megNet®: Visualization and Modelling Environment for Translational Medicine.
ERCIM News
Matej Oresic, Jyrki Lötjönen, Catherine Bounsaythip
2006 J jnl
MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data.
Bioinform.
Mikko Katajamaa, Jarkko Miettinen, Matej Oresic
2005 — conf
Data integration and visualization system for enabling conceptual biology.
ISMB (Supplement of Bioinformatics)
Peddinti V. Gopalacharyulu, Erno Lindfors, Catherine Bounsaythip, Teemu Kivioja, Laxman Yetukuri, Jaakko Hollmén, Matej Oresic
2005 J jnl
Processing methods for differential analysis of LC/MS profile data.
BMC Bioinform.
Mikko Katajamaa, Matej Oresic
1995 — conf
Tracking metastable states to free-energy global minima.
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding
Bruce W. Church, Matej Oresic, David Shalloway