Matej Lexa

30 papers C 3Misc 1Journal 14Unranked 10
YearRankTypeTitle / Venue / Authors
2024 J jnl
A perspective on genetic and polygenic risk scores - advances and limitations and overview of associated tools.
Briefings Bioinform.
Jana Schwarzerova, Martin Hurta, Vojtech Barton, Matej Lexa, Dirk Walther, Valentine Provazník, Wolfram Weckwerth
2024 J jnl
Correction: Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning.
BioData Min.
Jakub Horvath, Pavel Jedlicka, Marie Kratka, Zdenek Kubat, Eduard Kejnovský, Matej Lexa
2024 J jnl
Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning.
BioData Min.
Jakub Horvath, Pavel Jedlicka, Marie Kratka, Zdenek Kubat, Eduard Kejnovský, Matej Lexa
2023 — ed.
Proceedings of the 23rd Conference Information Technologies - Applications and Theory (ITAT 2023), Tatranské Matliare, Slovakia, September 22-26, 2023.
ITAT
Brona Brejová, Lucie Ciencialová, Martin Holena, Róbert Jajcay, Tatiana Jajcayová, Matej Lexa, Frantisek Mráz, Dana Pardubská, Martin Plátek
2022 J jnl
HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization.
Bioinform.
Matej Lexa, Monika Cechova, Son Hoang Nguyen, Pavel Jedlicka, Viktor Tokan, Zdenek Kubat, Roman Hobza, Eduard Kejnovský
2021 J jnl
SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci.
Briefings Bioinform.
Pratik Goswami, Martin Bartas, Matej Lexa, Natália Bohálová, Adriana Volná, Jirí Cerven, Veronika Cervenová, Petr Pecinka, Vladimír Spunda, Miroslav Fojta, Václav Brázda
2020 J jnl
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting.
Bioinform.
Matej Lexa, Pavel Jedlicka, Ivan Vanat, Michal Cervenanský, Eduard Kejnovský
2020 J jnl
pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm.
Bioinform.
Dominika Labudová, Jirí Hon, Matej Lexa
2018 — conf
TE-nester: a recursive software tool for structure-based discovery of nested transposable elements.
BIBM
Matej Lexa, Radovan Lapar, Pavel Jedlicka, Ivan Vanat, Michal Cervenanský, Eduard Kejnovský
2017 J jnl
pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R.
Bioinform.
Jirí Hon, Tomás Martínek, Jaroslav Zendulka, Matej Lexa
2016 J jnl
Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets.
Bioinform.
Adam Krejci, Ted R. Hupp, Matej Lexa, Borivoj Vojtesek, Petr Müller
2016 — conf
Semi-automatic mining of correlated data from a complex database: Correlation network visualization.
ICCABS
Matej Lexa, Radovan Lapar
2015 — conf
A Flexible Denormalization Technique for Data Analysis above a Deeply-Structured Relational Database: Biomedical Applications.
IWBBIO (1)
Stanislav Stefanic, Matej Lexa
2014 — conf
The Possibilities of Filtering Pairs of SNPs in GWAS Studies - Exploratory Study on Public Protein-interaction and Pathway Data.
BIOINFORMATICS
Matej Lexa, Stanislav Stefanic
2014 — conf
Uneven Distribution of Potential Triplex Sequences in the Human Genome - In Silico Study using the R/Bioconductor Package Triplex.
BIOINFORMATICS
Matej Lexa, Tomás Martínek, Marie Brázdová
2013 J jnl
Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences.
Bioinform.
Jirí Hon, Tomás Martínek, Kamil Rajdl, Matej Lexa
2012 — conf
Prediction of Significant Cruciform Structures from Sequence in Topologically Constrained DNA - A Probabilistic Modelling Approach.
BIOINFORMATICS
Matej Lexa, Lucie Navrátilová, Karel Nejedlý, Marie Brázdová
2012 — conf
cswHMM: A Novel Context Switching Hidden Markov Model for Biological Sequence Analysis.
BIOINFORMATICS
Vojtech Bystrý, Matej Lexa
2011 J jnl
A dynamic programming algorithm for identification of triplex-forming sequences.
Bioinform.
Matej Lexa, Tomás Martínek, Ivana Burgetová, Daniel Kopecek, Marie Brázdová
2011 — conf
Architecture model for approximate tandem repeat detection.
ASAP
Tomás Martínek, Matej Lexa
2010 — conf
Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments.
ITBAM
Ivana Rudolfova, Jaroslav Zendulka, Matej Lexa
2010 Misc conf
Hardware Acceleration of Approximate Tandem Repeat Detection.
FCCM
Tomás Martínek, Matej Lexa
2009 C conf
Architecture model for approximate palindrome detection.
DDECS
Tomás Martínek, Jan Vozenilek, Matej Lexa
2009 — ch.
Data-Mining Protein Structure by Clustering, Segmentation and Evolutionary Algorithms.
Foundations of Computational Intelligence (4)
Matej Lexa, Václav Snásel, Ivan Zelinka
2008 — conf
Hardware acceleration of approximate palindromes searching.
FPT
Tomás Martínek, Matej Lexa
2007 C conf
Automatic Generation of Circuits for Approximate String Matching.
DDECS
Tomás Martínek, Otto Fucík, Patrik Beck, Matej Lexa
2006 C conf
A Flexible Technique for the Automatic Design of Approximate String Matching Architectures.
DDECS
Tomás Martínek, Jan Korenek, Otto Fucík, Matej Lexa
2005 J jnl
RAP: a new computer program for de novo identification of repeated sequences in whole genomes.
Bioinform.
Davide Campagna, Chiara Romualdi, Nicola Vitulo, Micky Del Favero, Matej Lexa, Nicola Cannata, Giorgio Valle
2003 J jnl
PRIMEX: rapid identification of oligonucleotide matches in whole genomes.
Bioinform.
Matej Lexa, Giorgio Valle
2001 J jnl
Virtual PCR.
Bioinform.
Matej Lexa, J. Horak, Bretislav Brzobohaty