Massimo Andreatta

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2026 J jnl
UCell and pyUCell: single-cell gene signature scoring for R and Python.
Bioinform.
Massimo Andreatta, Santiago J. Carmona
2022 J jnl
SPICA: Swiss portal for immune cell analysis.
Nucleic Acids Res.
Massimo Andreatta, Fabrice P. A. David, Christian Iseli, Nicolas Guex, Santiago J. Carmona
2022 J jnl
scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets.
Bioinform.
Massimo Andreatta, Ariel J. Berenstein, Santiago J. Carmona
2021 J jnl
STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data.
Bioinform.
Massimo Andreatta, Santiago J. Carmona
2019 J jnl
IEDB-AR: immune epitope database - analysis resource in 2019.
Nucleic Acids Res.
Sandeep Kumar Dhanda, Swapnil Mahajan, Sinu Paul, Zhen Yan, Haeuk Kim, Martin Closter Jespersen, Vanessa Isabell Jurtz, Massimo Andreatta, Jason A. Greenbaum, Paolo Marcatili, Alessandro Sette, Morten Nielsen, Bjoern Peters
2018 J jnl
An automated benchmarking platform for MHC class II binding prediction methods.
Bioinform.
Massimo Andreatta, Thomas Trolle, Zhen Yan, Jason A. Greenbaum, Bjoern Peters, Morten Nielsen
2017 J jnl
GibbsCluster: unsupervised clustering and alignment of peptide sequences.
Nucleic Acids Res.
Massimo Andreatta, Bruno Alvarez, Morten Nielsen
2017 J jnl
NNAlign: a platform to construct and evaluate artificial neural network models of receptor-ligand interactions.
Nucleic Acids Res.
Morten Nielsen, Massimo Andreatta
2016 J jnl
Gapped sequence alignment using artificial neural networks: application to the MHC class I system.
Bioinform.
Massimo Andreatta, Morten Nielsen
2014 J jnl
Quantifying Significance of MHC II Residues.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ying Fan, Ruoshui Lu, Lusheng Wang, Massimo Andreatta, Shuai Cheng Li
2013 J jnl
Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach.
Bioinform.
Massimo Andreatta, Ole Lund, Morten Nielsen
2011 J jnl
Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts.
PLoS Comput. Biol.
Francisco S. Roque, Peter Bjødstrup Jensen, Henriette Schmock, Marlene Dalgaard, Massimo Andreatta, Thomas Folkmann Hansen, Karen Søeby, Søren Bredkjær, Anders Juul, Thomas Werge, Lars Juhl Jensen, Søren Brunak