Masanori Arita

43 papers A 1B 2C 2Misc 1Journal 26Unranked 10

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Data Sovereignty and Open Sharing: Reconceiving Benefit-Sharing and Governance of Digital Sequence Information. Data Sci. J. Masanori Arita
2024	J	`jnl`	InChI isotopologue and isotopomer specifications. J. Cheminformatics Hunter N. B. Moseley, Philippe Rocca-Serra, Reza M. Salek, Masanori Arita, Emma Schymanski
2021	J	`jnl`	The international nucleotide sequence database collaboration. Nucleic Acids Res. Masanori Arita, Ilene Karsch-Mizrachi, Guy Cochrane
2020	Misc	`conf`	Development of the portal site of COVID-19 data in Japan: poster abstract. SenSys Jun-ichi Onami, Koji Sakaguchi, Masanori Arita, Kazutsuna Yamaji
2019	J	`jnl`	Rearrangement analysis of multiple bacterial genomes. BMC Bioinform. Mehwish Noureen, Ipputa Tada, Takeshi Kawashima, Masanori Arita
2018	J	`jnl`	Comparative analysis of probiotic bacteria based on a new definition of core genome. J. Bioinform. Comput. Biol. Maria Satti, Yasuhiro Tanizawa, Akihito Endo, Masanori Arita
2017	J	`jnl`	Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library. J. Cheminformatics Hiroshi Tsugawa, Kazutaka Ikeda, Wataru Tanaka, Yuya Senoo, Makoto Arita, Masanori Arita
2017	J	`jnl`	Computational Metabolomics (NII Shonan Meeting 2017-3). NII Shonan Meet. Rep. Masanori Arita, Sebastian Böcker, Steffen Neumann
2017	J	`jnl`	Visualization of consensus genome structure without using a reference genome. BMC Genom. Ipputa Tada, Yasuhiro Tanizawa, Masanori Arita
2016	J	`jnl`	PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems. Nucleic Acids Res. Kansuporn Sriyudthsak, Ramon Francisco Pacquiao Mejia, Masanori Arita, Masami Y. Hirai
2014	J	`jnl`	MRMPROBS suite for metabolomics using large-scale MRM assays. Bioinform. Hiroshi Tsugawa, Mitsuhiro Kanazawa, Atsushi Ogiwara, Masanori Arita
2012	—	`ch.`	DNA Memory. Handbook of Natural Computing Masanori Arita, Masami Hagiya, Masahiro Takinoue, Fumiaki Tanaka
2011	J	`jnl`	Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics. BMC Syst. Biol. Henning Redestig, Miyako Kusano, Kaworu Ebana, Makoto Kobayashi, Akira Oikawa, Yozo Okazaki, Fumio Matsuda, Masanori Arita, Naoko Fujita, Kazuki Saito
2011	J	`jnl`	GC/MS Based Metabolomics: Development of a Data Mining System for Metabolite Identification by using Soft Independent Modeling of Class Analogy (SIMCA). BMC Bioinform. Hiroshi Tsugawa, Yuki Tsujimot, Masanori Arita, Takeshi Bamba, Eiichiro Fukusaki
2011	J	`jnl`	Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach. BMC Syst. Biol. Atsushi Fukushima, Miyako Kusano, Henning Redestig, Masanori Arita, Kazuki Saito
2011	J	`jnl`	Reconstructing phylogeny from metabolic substrate-product relationships. BMC Bioinform. Che-Wei Chang, Ping-Chiang Lyu, Masanori Arita
2010	J	`jnl`	Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis. BMC Bioinform. Henning Redestig, Miyako Kusano, Atsushi Fukushima, Fumio Matsuda, Kazuki Saito, Masanori Arita
2009	J	`jnl`	A pitfall of wiki solution for biological databases. Briefings Bioinform. Masanori Arita
2009	—	`conf`	Ontology Checking and Integration of Crude-Drug and Kampo Information. BMEI Masanori Arita, Kazuhiro Suwa, Miwa Yoshimoto, Aki Hirai, Shigehiko Kanaya
2009	—	`conf`	Traceable Analysis of Multiple-Stage Mass Spectra through Precursor-Product Annotations. GCB Hisayuki Horai, Masanori Arita, Yuya Ojima, Yoshito Nihei, Shigehiko Kanaya, Takeshi Nishioka
2008	—	`conf`	Comparison of ESI-MS Spectra in MassBank Database. BMEI (2) Hisayuki Horai, Masanori Arita, Takaaki Nishioka
2008	J	`jnl`	Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database. BioData Min. Masanori Arita, Kazuhiro Suwa
2008	J	`jnl`	Time-resolved metabolomics reveals metabolic modulation in rice foliage. BMC Syst. Biol. Shigeru Sato, Masanori Arita, Tomoyoshi Soga, Takaaki Nishioka, Masaru Tomita
2007	J	`jnl`	Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms. Inf. Media Technol. Hisashi Tuji, Md. Altaf-Ul-Amin, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya
2007	B	`conf`	Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions. APBC Kinya Okada, Kiyoshi Asai, Masanori Arita
2007	J	`jnl`	Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. BMC Syst. Biol. Miyako Kusano, Atsushi Fukushima, Masanori Arita, Pär Jonsson, Thomas Moritz, Makoto Kobayashi, Naomi Hayashi, Takayuki Tohge, Kazuki Saito
2006	J	`jnl`	Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns. Bioinform. Hideki Nagasaki, Masanori Arita, Tatsuya Nishizawa, Makiko Suwa, Osamu Gotoh
2005	—	`conf`	Searching Similar Modules in Protein Interaction Netwo. ICDE Workshops Hiroyuki Oka, Masanori Arita
2004	J	`jnl`	Comma-free design for DNA words. Commun. ACM Masanori Arita
2004	—	`conf`	Writing Information into DNA. Aspects of Molecular Computing Masanori Arita
2003	J	`jnl`	Dynamic modeling of genetic networks using genetic algorithm and S-system. Bioinform. Shinichi Kikuchi, Daisuke Tominaga, Masanori Arita, Katsutoshi Takahashi, Masaru Tomita
2002	J	`jnl`	DNA Sequence Design Using Templates. New Gener. Comput. Masanori Arita, Satoshi Kobayashi
2002	C	`conf`	Modeling splicing sites with pairwise correlations. ECCB Masanori Arita, Koji Tsuda, Kiyoshi Asai
2002	B	`conf`	On Template Method for DNA Sequence Design. DNA Satoshi Kobayashi, Tomohiro Kondo, Masanori Arita
2000	A	`conf`	Improving Sequence Design for DNA Computing. GECCO Masanori Arita, Akio Nishikawa, Masami Hagiya, Ken Komiya, Hidetaka Gouzu, Kensaku Sakamoto
2000	J	`jnl`	Metabolic reconstruction using shortest paths. Simul. Pract. Theory Masanori Arita
2000	—	`conf`	Reconstructing Metabolic Pathways with New Enzyme Classification. German Conference on Bioinformatics Masanori Arita, Kiyoshi Asai, Takaaki Nishioka
2000	—	`conf`	Successive State Transitions with I/O Interface by Molecules. DNA Computing Ken Komiya, Kensaku Sakamoto, Hidetaka Gouzu, Shigeyuki Yokoyama, Masanori Arita, Akio Nishikawa, Masami Hagiya
1997	C	`conf`	Joining and rotating data with molecules. ICEC Masanori Arita, Masami Hagiya, Akira Suyama
1997	—	`conf`	Solid phase DNA solution to the Hamiltonian path problem. DNA Based Computers Nobuhiko Morimoto, Masanori Arita, Akira Suyama
1997	—	`conf`	Stepwise Generation of Hamiltonian Path with Molecules. BCEC Nobuhiko Morimoto, Masanori Arita, Akira Suyama
1997	—	`conf`	Towards parallel evaluation and learning of Boolean μ-formulas with molecules. DNA Based Computers Masami Hagiya, Masanori Arita, Daisuke Kiga, Kensaku Sakamoto, Shigeyuki Yokoyama
1995	J	`jnl`	Knowledge-Based Simulation of Regulatory Action in lambda phage. Int. J. Artif. Intell. Tools Tomoaki Shimada, Masami Hagiya, Masanori Arita, Shin-ya Nishizaki, Chew Lim Tan