Masakazu Sekijima

25 papers C 1Misc 4Journal 13Unranked 7
YearRankTypeTitle / Venue / Authors
2025 J jnl
DiffInt: A Diffusion Model for Structure-Based Drug Design with Explicit Hydrogen Bond Interaction Guidance.
J. Chem. Inf. Model.
Masami Sako, Nobuaki Yasuo, Masakazu Sekijima
2025 J jnl
PRA-MutPred: Predicting the Effect of Point Mutations in Protein-RNA Complexes Using Structural Features.
J. Chem. Inf. Model.
K. Harini, Masakazu Sekijima, M. Michael Gromiha
2024 J jnl
IEV2Mol: Molecular Generative Model Considering Protein-Ligand Interaction Energy Vectors.
J. Chem. Inf. Model.
Mami Ozawa, Shogo Nakamura, Nobuaki Yasuo, Masakazu Sekijima
2024 J jnl
Mothra: Multiobjective
J. Chem. Inf. Model.
Takamasa Suzuki, Dian Ma, Nobuaki Yasuo, Masakazu Sekijima
2022 C conf
An Improved Model for Predicting Compound Retrosynthesizability Using Machine Learning.
BIBE
Mami Ozawa, Nobuaki Yasuo, Masakazu Sekijima
2022 J jnl
Screening for Inhibitors of Main Protease in SARS-CoV-2: In Silico and In Vitro Approach Avoiding Peptidyl Secondary Amides.
J. Chem. Inf. Model.
Kazuki Z. Yamamoto, Nobuaki Yasuo, Masakazu Sekijima
2021 J jnl
MERMAID: an open source automated hit-to-lead method based on deep reinforcement learning.
J. Cheminformatics
Daiki Erikawa, Nobuaki Yasuo, Masakazu Sekijima
2020 J jnl
ProAffiMuSeq: sequence-based method to predict the binding free energy change of protein-protein complexes upon mutation using functional classification.
Bioinform.
Sherlyn Jemimah, Masakazu Sekijima, M. Michael Gromiha
2019 J jnl
Improved Method of Structure-Based Virtual Screening via Interaction-Energy-Based Learning.
J. Chem. Inf. Model.
Nobuaki Yasuo, Masakazu Sekijima
2018 — conf
CoDe-DTI: Collaborative Deep Learning-based Drug-Target Interaction Prediction.
BIBM
Nobuaki Yasuo, Yusuke Nakashima, Masakazu Sekijima
2018 J jnl
Compound property enhancement by virtual compound synthesis.
J. Bioinform. Comput. Biol.
Naoki Arai, Shunsuke Yoshikawa, Nobuaki Yasuo, Ryunosuke Yoshino, Masakazu Sekijima
2018 J jnl
Web Molecular Graphics: Emerging Technologies & Standards (NII Shonan Meeting 2018-19).
NII Shonan Meet. Rep.
Seán I. O'Donoghue, Masakazu Sekijima, Marc Baaden
2016 J jnl
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.
BMC Bioinform.
Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Raju Nagarajan, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic
2015 — conf
GPU Accelerated Molecular Dynamics with Method of Heterogeneous Load Balancing.
IPDPS Workshops
Takuro Udagawa, Masakazu Sekijima
2012 J jnl
Distance-based Factor Graph Linearization and Sampled Max-sum Algorithm for Efficient 3D Potential Decoding of Macromolecules.
Inf. Media Technol.
Takahiro Shinozaki, Toshinao Iwaki, Shiqiao Du, Masakazu Sekijima, Sadaoki Furui
2011 — conf
The Power Efficiency of GPUs in Multi Nodes Environment with Molecular Dynamics.
ICPP Workshops
Takuro Udagawa, Masakazu Sekijima
2008 J jnl
Free Energy Landscape Analysis System Based on Parallel Molecular Dynamics Simulation.
Inf. Media Technol.
Masakazu Sekijima, Junta Doi, Shinya Honda, Tamotsu Noguchi, Shigenori Shimizu, Yutaka Akiyama
2008 Misc conf
Large-Scale Computing for Protein-Protein Binding Free Energy Calculation.
PDPTA
Junichi Ikeda, Kazuki Ohno, Sayaka Akioka, Masaya Orita, Yoichi Muraoka, Tamotsu Noguchi, Masakazu Sekijima
2007 Misc conf
Development of Molecular Dynamics Simulation Based Flexible Docking System.
PDPTA
Sachi Kimura, Masakazu Sekijima, Masami Takata, Tamotsu Noguchi, Kazuki Joe
2007 Misc conf
Development of an SVM based Prediction System for Metalbinding Sites in Protein.
PDPTA
Masami Nakazawa, Masami Takata, Kiyonobu Yokota, Tamotsu Noguchi, Masakazu Sekijima, Kazuki Joe
2007 — conf
High-Density Surface Reconstruction of Fine Arts and Documents for Complete Reproduction and Counterfeit Detection.
ICNSC
Junta Doi, Kentaro Shimizu, Masakazu Sekijima
2007 — conf
Optimization and evaluation of parallel molecular dynamics simulation on blue gene/L.
Parallel and Distributed Computing and Networks
Masakazu Sekijima, Junta Doi, Tamotsu Noguchi, Yutaka Akiyama, Shigenori Shimizu
2007 Misc conf
Optimization of Molecular Dynamics Simulation on Cell Processor.
PDPTA
Manami Sasaki, Masakazu Sekijima, Masami Takata, Kazuki Joe
2003 — conf
Molecular Dynamics Simulation of Prion Protein by Large Scale Cluster Computing.
ISHPC
Masakazu Sekijima, Chie Motono, Satoshi Yamasaki, Kiyotoshi Kaneko, Yutaka Akiyama
2002 — conf
Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment.
IASTED PDCS
Masakazu Sekijima, Shinya Takasaki, Shugo Nakamura, Kentaro Shimizu