Masaaki Kotera

32 papers A* 1Journal 29Unranked 2
YearRankTypeTitle / Venue / Authors
2022 — conf
Multimodal Dish Pairing: Predicting Side Dishes to Serve with a Main Dish.
CEA++@MM
Taichi Nishimura, Katsuhiko Ishiguro, Keita Higuchi, Masaaki Kotera
2022 — conf
Recipe Recommendation for Balancing Ingredient Preference and Daily Nutrients.
CEA++@MM
Sara Ozeki, Masaaki Kotera, Katushiko Ishiguro, Taichi Nishimura, Keita Higuchi
2021 J jnl
Fast Estimation Method for the Stability of Ensemble Feature Selectors.
CoRR
Rina Onda, Zhengyan Gao, Masaaki Kotera, Kenta Oono
2020 J jnl
BioHackathon 2015: Semantics of data for life sciences and reproducible research.
F1000Research
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
2020 J jnl
Comparison and improvement of the predictability and interpretability with ensemble learning models in QSPR applications.
J. Cheminformatics
Chia-Hsiu Chen, Kenichi Tanaka, Masaaki Kotera, Kimito Funatsu
2020 J jnl
Data Transfer Approaches to Improve Seq-to-Seq Retrosynthesis.
CoRR
Katsuhiko Ishiguro, Kazuya Ujihara, Ryohto Sawada, Hirotaka Akita, Masaaki Kotera
2019 J jnl
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services.
F1000Research
Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
2019 J jnl
Metabolic disassembler for understanding and predicting the biosynthetic units of natural products.
BMC Bioinform.
Kohei Amano, Tsubasa Matsumoto, Kenichi Tanaka, Kimito Funatsu, Masaaki Kotera
2019 J jnl
Network-based characterization of drug-protein interaction signatures with a space-efficient approach.
BMC Syst. Biol.
Yasuo Tabei, Masaaki Kotera, Ryusuke Sawada, Yoshihiro Yamanishi
2016 J jnl
Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs.
J. Chem. Inf. Model.
Yuki Moriya, Takuji Yamada, Shujiro Okuda, Zenichi Nakagawa, Masaaki Kotera, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
2016 J jnl
Simultaneous prediction of enzyme orthologs from chemical transformation patterns for
Bioinform.
Yasuo Tabei, Yoshihiro Yamanishi, Masaaki Kotera
2015 J jnl
Large-Scale Prediction of Beneficial Drug Combinations Using Drug Efficacy and Target Profiles.
J. Chem. Inf. Model.
Hiroaki Iwata, Ryusuke Sawada, Sayaka Mizutani, Masaaki Kotera, Yoshihiro Yamanishi
2015 J jnl
Metabolome-scale
Bioinform.
Yoshihiro Yamanishi, Yasuo Tabei, Masaaki Kotera
2014 J jnl
DINIES: drug-target interaction network inference engine based on supervised analysis.
Nucleic Acids Res.
Yoshihiro Yamanishi, Masaaki Kotera, Yuki Moriya, Ryusuke Sawada, Minoru Kanehisa, Susumu Goto
2014 J jnl
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.
Bioinform.
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Ai Muto, Yuki Moriya, Toshiaki Tokimatsu, Susumu Goto
2014 J jnl
PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list.
J. Bioinform. Comput. Biol.
Masaaki Kotera, Yosuke Nishimura, Zenichi Nakagawa, Ai Muto, Yuki Moriya, Shinobu Okamoto, Shuichi Kawashima, Toshiaki Katayama, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
2014 J jnl
Pharmacoepidemiological characterization of drug-induced adverse reaction clusters towards understanding of their mechanisms.
Comput. Biol. Chem.
Sayaka Mizutani, Yousuke Noro, Masaaki Kotera, Susumu Goto
2014 J jnl
WURCS: The Web3 Unique Representation of Carbohydrate Structures.
J. Chem. Inf. Model.
Kenichi Tanaka, Kiyoko F. Aoki-Kinoshita, Masaaki Kotera, Hiromichi Sawaki, Shinichiro Tsuchiya, Noriaki Fujita, Toshihide Shikanai, Masaki Kato, Shin Kawano, Issaku Yamada, Hisashi Narimatsu
2013 J jnl
Inferring protein domains associated with drug side effects based on drug-target interaction network.
BMC Syst. Biol.
Hiroaki Iwata, Sayaka Mizutani, Yasuo Tabei, Masaaki Kotera, Susumu Goto, Yoshihiro Yamanishi
2013 J jnl
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics.
BMC Syst. Biol.
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
2013 J jnl
Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions.
J. Chem. Inf. Model.
Ai Muto, Masaaki Kotera, Toshiaki Tokimatsu, Zenichi Nakagawa, Susumu Goto, Minoru Kanehisa
2013 A* conf
Succinct interval-splitting tree for scalable similarity search of compound-protein pairs with property constraints.
KDD
Yasuo Tabei, Akihiro Kishimoto, Masaaki Kotera, Yoshihiro Yamanishi
2013 J jnl
Supervised
Bioinform.
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Toshiaki Tokimatsu, Susumu Goto
2012 J jnl
Drug Side-Effect Prediction Based on the Integration of Chemical and Biological Spaces.
J. Chem. Inf. Model.
Yoshihiro Yamanishi, Edouard Pauwels, Masaaki Kotera
2012 J jnl
Drug target prediction using adverse event report systems: a pharmacogenomic approach.
Bioinform.
Masataka Takarabe, Masaaki Kotera, Yosuke Nishimura, Susumu Goto, Yoshihiro Yamanishi
2012 J jnl
GENIES: gene network inference engine based on supervised analysis.
Nucleic Acids Res.
Masaaki Kotera, Yoshihiro Yamanishi, Yuki Moriya, Minoru Kanehisa, Susumu Goto
2011 J jnl
MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites.
BMC Bioinform.
Masaaki Kotera, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
2011 J jnl
Network-Based Analysis and Characterization of Adverse Drug-Drug Interactions.
J. Chem. Inf. Model.
Masataka Takarabe, Daichi Shigemizu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
2010 J jnl
Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework.
Bioinform.
Yoshihiro Yamanishi, Masaaki Kotera, Minoru Kanehisa, Susumu Goto
2010 J jnl
PathPred: an enzyme-catalyzed metabolic pathway prediction server.
Nucleic Acids Res.
Yuki Moriya, Daichi Shigemizu, Masahiro Hattori, Toshiaki Tokimatsu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
2009 J jnl
E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.
Bioinform.
Yoshihiro Yamanishi, Masahiro Hattori, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
2008 J jnl
Eliciting Possible Reaction Equations and Metabolic Pathways Involving Orphan Metabolites.
J. Chem. Inf. Model.
Masaaki Kotera, Andrew G. McDonald, Sinéad Boyce, Keith F. Tipton