Marília D. V. Braga

47 papers B 2C 8Journal 28Unranked 8
YearRankTypeTitle / Venue / Authors
2025 J jnl
Closing the Complexity Gap of the Double Distance Problem.
IEEE Trans. Comput. Biol. Bioinform.
Luís Cunha, Thiago Lopes, Uéverton S. Souza, Leonard Bohnenkämper, Marília D. V. Braga, Jens Stoye
2024 J jnl
Closing the complexity gap of the double distance problem.
CoRR
Luís Cunha, Thiago Lopes, Uéverton S. Souza, Marília D. V. Braga, Jens Stoye
2024 J jnl
Investigating the complexity of the double distance problems.
Algorithms Mol. Biol.
Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye
2023 J jnl
Efficient gene orthology inference via large-scale rearrangements.
Algorithms Mol. Biol.
Diego P. Rubert, Marília D. V. Braga
2023 J jnl
Investigating the complexity of the double distance problems.
CoRR
Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye
2023 — conf
On the Class of Double Distance Problems.
RECOMB-CG
Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye
2022 C conf
A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance.
WABI
Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye
2022 C conf
Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes.
WABI
Diego P. Rubert, Marília D. V. Braga
2021 J jnl
Computing the Inversion-Indel Distance.
IEEE ACM Trans. Comput. Biol. Bioinform.
Eyla Willing, Jens Stoye, Marília D. V. Braga
2021 J jnl
Computing the Rearrangement Distance of Natural Genomes.
J. Comput. Biol.
Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye
2021 J jnl
Natural family-free genomic distance.
Algorithms Mol. Biol.
Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga
2021 J jnl
The potential of family-free rearrangements towards gene orthology inference.
J. Bioinform. Comput. Biol.
Diego P. Rubert, Daniel Doerr, Marília D. V. Braga
2020 B conf
Computing the Rearrangement Distance of Natural Genomes.
RECOMB
Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye
2020 J jnl
Computing the rearrangement distance of natural genomes.
CoRR
Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye
2020 C conf
Natural Family-Free Genomic Distance.
WABI
Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga
2020 J jnl
Natural family-free genomic distance.
CoRR
Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga
2019 J jnl
Computing the Inversion-Indel Distance.
CoRR
Eyla Willing, Jens Stoye, Marília D. V. Braga
2018 J jnl
Computing the family-free DCJ similarity.
BMC Bioinform.
Diego P. Rubert, Edna Ayako Hoshino, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez
2017 — conf
Algorithms for Computing the Family-Free Genomic Similarity Under DCJ.
RECOMB-CG
Diego P. Rubert, Gabriela Medeiros, Edna Ayako Hoshino, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez
2017 J jnl
Genomic Distance with High Indel Costs.
IEEE ACM Trans. Comput. Biol. Bioinform.
Poly H. da Silva, Raphael Machado, Simone Dantas, Marília D. V. Braga
2016 C conf
A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates.
WABI
Diego P. Rubert, Pedro Feijão, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez
2015 J jnl
On the family-free DCJ distance and similarity.
Algorithms Mol. Biol.
Fábio Viduani Martinez, Pedro Feijão, Marília D. V. Braga, Jens Stoye
2015 J jnl
Sorting Linear Genomes with Rearrangements and Indels.
IEEE ACM Trans. Comput. Biol. Bioinform.
Marília D. V. Braga, Jens Stoye
2014 C conf
On the Family-Free DCJ Distance.
WABI
Fábio Viduani Martinez, Pedro Feijão, Marília D. V. Braga, Jens Stoye
2013 C conf
An Overview of Genomic Distances Modeled with Indels.
CiE
Marília D. V. Braga
2013 J jnl
DCJ-indel and DCJ-substitution distances with distinct operation costs.
Algorithms Mol. Biol.
Poly H. da Silva, Raphael Machado, Simone Dantas, Marília D. V. Braga
2013 J jnl
On the inversion-indel distance.
BMC Bioinform.
Eyla Willing, Simone Zaccaria, Marília D. V. Braga, Jens Stoye
2013 — conf
Restricted DCJ-Indel Model Revisited.
BSB
Marília D. V. Braga, Jens Stoye
2013 — ch.
The Potential of Family-Free Genome Comparison.
Models and Algorithms for Genome Evolution
Marília D. V. Braga, Cédric Chauve, Daniel Doerr, Katharina Jahn, Jens Stoye, Annelyse Thévenin, Roland Wittler
2012 C conf
DCJ-indel Distance with Distinct Operation Costs.
WABI
Poly H. da Silva, Marília D. V. Braga, Raphael Machado, Simone Dantas
2012 J jnl
Restricted DCJ-indel model: sorting linear genomes with DCJ and indels.
BMC Bioinform.
Poly H. da Silva, Raphael Machado, Simone Dantas, Marília D. V. Braga
2011 — conf
Analysis and Implementation of Sorting by Transpositions Using Permutation Trees.
BSB
Marcelo P. Lopes, Marília D. V. Braga, Celina M. H. de Figueiredo, Rodrigo de A. Hausen, Luis Antonio Brasil Kowada
2011 J jnl
Double Cut and Join with Insertions and Deletions.
J. Comput. Biol.
Marília D. V. Braga, Eyla Willing, Jens Stoye
2011 J jnl
Genomic distance under gene substitutions.
BMC Bioinform.
Marília D. V. Braga, Raphael Machado, Leonardo Costa Ribeiro, Jens Stoye
2011 J jnl
On the weight of indels in genomic distances.
BMC Bioinform.
Marília D. V. Braga, Raphael Machado, Leonardo Costa Ribeiro, Jens Stoye
2011 J jnl
Restricted DCJ Model: Rearrangement Problems with Chromosome Reincorporation.
J. Comput. Biol.
Jakub Kovác, Robert Warren, Marília D. V. Braga, Jens Stoye
2010 C conf
Genomic Distance with DCJ and Indels.
WABI
Marília D. V. Braga, Eyla Willing, Jens Stoye
2010 — conf
On Sorting Genomes with DCJ and Indels.
RECOMB-CG
Marília D. V. Braga
2010 J jnl
Repetition-free longest common subsequence.
Discret. Appl. Math.
Said Sadique Adi, Marília D. V. Braga, Cristina G. Fernandes, Carlos Eduardo Ferreira, Fábio Viduani Martinez, Marie-France Sagot, Marco Aurelio Stefanes, Christian Tjandraatmadja, Yoshiko Wakabayashi
2010 — conf
The Problem of Chromosome Reincorporation in DCJ Sorting and Halving.
RECOMB-CG
Jakub Kovác, Marília D. V. Braga, Jens Stoye
2010 J jnl
The Solution Space of Sorting by DCJ.
J. Comput. Biol.
Marília D. V. Braga, Jens Stoye
2009 J jnl
An asymmetric approach to preserve common intervals while sorting by reversals.
Algorithms Mol. Biol.
Marília D. V. Braga, Christian Gautier, Marie-France Sagot
2009 — conf
Counting All DCJ Sorting Scenarios.
RECOMB-CG
Marília D. V. Braga, Jens Stoye
2008 J jnl
Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution.
IEEE ACM Trans. Comput. Biol. Bioinform.
Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier
2008 J jnl
Repetition-free longest common subsequence.
Electron. Notes Discret. Math.
Said Sadique Adi, Marília D. V. Braga, Cristina G. Fernandes, Carlos Eduardo Ferreira, Fábio Viduani Martinez, Marie-France Sagot, Marco Aurelio Stefanes, Christian Tjandraatmadja, Yoshiko Wakabayashi
2007 — conf
The Solution Space of Sorting by Reversals.
ISBRA
Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier
2002 B conf
An Algorithm That Builds a Set of Strings Given Its Overlap Graph.
LATIN
Marília D. V. Braga, Joao Meidanis