María Suárez-Diez

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
Response to Letter to Editor by A. Derbalah et al.: the role of automation in enhancing reproducibility and interoperability of PBPK models.
Briefings Bioinform.
Elena Domínguez Romero, Stanislav Mazurenko, Martin Scheringer, Vítor A. P. Martins dos Santos, Chris T. A. Evelo, Mihail Anton, John M. Hancock, Anze Zupanic, María Suárez-Diez
2024 J jnl
Making PBPK models more reproducible in practice.
Briefings Bioinform.
Elena Domínguez Romero, Stanislav Mazurenko, Martin Scheringer, Vítor A. P. Martins dos Santos, Chris T. A. Evelo, Mihail Anton, John M. Hancock, Anze Zupanic, María Suárez-Diez
2023 J jnl
A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia.
PLoS Comput. Biol.
William T. Scott Jr., Sara Benito-Vaquerizo, Johannes Zimmermann, Djordje Bajic, Almut Heinken, María Suárez-Diez, Peter J. Schaap
2022 J jnl
SALARECON connects the Atlantic salmon genome to growth and feed efficiency.
PLoS Comput. Biol.
Maksim V. Zakhartsev, Filip Rotnes, Marie Gulla, Ove Øyås, Jesse C. J. van Dam, María Suárez-Diez, Fabian Grammes, Róbert Anton Hafþórsson, Wout van Helvoirt, Jasper J. Koehorst, Peter J. Schaap, Yang Jin, Liv Torunn Mydland, Arne B. Gjuvsland, Simen R. Sandve, Vítor A. P. Martins dos Santos, Jon Olav Vik
2021 J jnl
Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism.
BMC Bioinform.
Neeraj Sinha, Evert M. van Schothorst, Guido J. E. K. Hooiveld, Jaap Keijer, Vítor A. P. Martins dos Santos, María Suárez-Diez
2018 J jnl
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles.
Bioinform.
Jasper J. Koehorst, Jesse C. J. van Dam, Edoardo Saccenti, Vítor A. P. Martins dos Santos, María Suárez-Diez, Peter J. Schaap
2018 J jnl
SyNDI: synchronous network data integration framework.
BMC Bioinform.
Erno Lindfors, Jesse C. J. van Dam, Carolyn M. C. Lam, Niels A. Zondervan, Vítor A. P. Martins dos Santos, María Suárez-Diez
2018 J jnl
The Empusa code generator: bridging the gap between the intended and the actual content of RDF resources.
CoRR
Jesse C. J. van Dam, Jasper J. Koehorst, Peter J. Schaap, María Suárez-Diez
2016 J jnl
Building pathway graphs from BioPAX data in R.
F1000Research
Nirupama Benis, Dirkjan Schokker, Frank Kramer, Mari A. Smits, María Suárez-Diez
2015 J jnl
RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource.
J. Biomed. Semant.
Jesse C. J. van Dam, Jasper J. Koehorst, Peter J. Schaap, Vítor A. P. Martins dos Santos, María Suárez-Diez
2014 J jnl
Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis.
BMC Syst. Biol.
Jesse C. J. van Dam, Peter J. Schaap, Vítor A. P. Martins dos Santos, María Suárez-Diez