María J. Martín

97 papers A 2B 4C 8Misc 9Journal 50Unranked 24
YearRankTypeTitle / Venue / Authors
2025 J jnl
BetaGPU: Harnessing GPU power for parallelized beta distribution functions.
SoftwareX
Alejandro Fernández-Fraga, Jorge González-Domínguez, María J. Martín
2024 Misc conf
Applying dynamic balancing to improve the performance of MPI parallel genomics applications.
SAC
Alejandro Fernández-Fraga, Jorge González-Domínguez, María J. Martín
2024 J jnl
GUANIN: an all-in-one GUi-driven analyzer for NanoString interactive normalization.
Bioinform.
Julián Montoto-Louzao, Alberto Gómez-Carballa, Xabier Bello, Jacobo Pardo-Seco, Alba Camino-Mera, Sandra Viz-Lasheras, María J. Martín, Federico Martinón-Torres, Antonio Salas
2024 J jnl
PARamrfinder: detecting allele-specific DNA methylation on multicore clusters.
J. Supercomput.
Alejandro Fernández-Fraga, Jorge González-Domínguez, María J. Martín
2023 B conf
Clupiter: a Raspberry Pi mini-supercomputer for educational purposes.
TrustCom
Alonso Rodríguez-Iglesias, María J. Martín, Juan Touriño
2022 J jnl
A SIMD algorithm for the detection of epistatic interactions of any order.
CoRR
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 J jnl
A SIMD algorithm for the detection of epistatic interactions of any order.
Future Gener. Comput. Syst.
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 J jnl
Evaluation of Existing Methods for High-Order Epistasis Detection.
IEEE ACM Trans. Comput. Biol. Bioinform.
Christian Ponte-Fernández, Jorge González-Domínguez, Antonio Carvajal-Rodríguez, María J. Martín
2022 J jnl
Fiuncho: a program for any-order epistasis detection in CPU clusters.
CoRR
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 J jnl
Fiuncho: a program for any-order epistasis detection in CPU clusters.
J. Supercomput.
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 — conf
Generating penetrance tables of high-order epistasis models with PyToxo.
XoveTIC
Borja González-Seoane, Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 J jnl
PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models.
BMC Bioinform.
Borja González-Seoane, Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 J jnl
The Quest for Orthologs orthology benchmark service in 2022.
Nucleic Acids Res.
Yannis Nevers, Tamsin E. M. Jones, Dushyanth Jyothi, Bethan Yates, Meritxell Ferret, Laura Portell-Silva, Laia Codó, Salvatore Cosentino, Marina Marcet-Houben, Anna Vlasova, Laetitia Poidevin, Arnaud Kress, Mark Hickman, Emma Persson, Ivana Pilizota, Cristina Guijarro-Clarke, Adrian M. Altenhoff, Elspeth A. Bruford, Christophe Dessimoz, Ingo Ebersberger, David M. Emms, Toni Gabaldón, Natasha M. Glover, Yanhui Hu, Wataru Iwasaki, Odile Lecompte, Benjamin Linard, María J. Martín, David S. Roos, Erik Sonhammer, Paul D. Thomas, David Thybert, Klaas Vandepoele, Salvador Capella-Gutiérrez, Asier Gonzalez-Uriarte, Javier Garrayo-Ventas, Dmitry Repchevsky, Vicky Sundesha, Erik L. L. Sonnhammer
2020 J jnl
Fast search of third-order epistatic interactions on CPU and GPU clusters.
Int. J. High Perform. Comput. Appl.
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2020 J jnl
Fault tolerance of MPI applications in exascale systems: The ULFM solution.
Future Gener. Comput. Syst.
Nuria Losada, Patricia González, María J. Martín, George Bosilca, Aurélien Bouteiller, Keita Teranishi
2020 J jnl
Toxo: a library for calculating penetrance tables of high-order epistasis models.
BMC Bioinform.
Christian Ponte-Fernández, Jorge González-Domínguez, Antonio Carvajal-Rodríguez, María J. Martín
2019 — conf
Analysis of the Construction of Similarity Matrices on Multi-core and Many-Core Platforms Using Different Similarity Metrics.
ICCS (1)
Uxía Casal, Jorge González-Domínguez, María J. Martín
2019 J jnl
Enhanced global optimization methods applied to complex fisheries stock assessment models.
Appl. Soft Comput.
David R. Penas, Andrés Gómez, Basilio B. Fraguela, María J. Martín, Santiago Cerviño
2019 J jnl
Local rollback for resilient MPI applications with application-level checkpointing and message logging.
Future Gener. Comput. Syst.
Nuria Losada, George Bosilca, Aurélien Bouteiller, Patricia González, María J. Martín
2018 — conf
Insights into Application-level Solutions towards Resilient MPI Applications.
HPCS
Patricia González, Nuria Losada, María J. Martín
2018 J jnl
MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jorge González-Domínguez, María J. Martín
2017 J jnl
A portable and adaptable fault tolerance solution for heterogeneous applications.
J. Parallel Distributed Comput.
Nuria Losada, Basilio B. Fraguela, Patricia González, María J. Martín
2017 J jnl
Assessing resilient versus stop-and-restart fault-tolerant solutions in MPI applications.
J. Supercomput.
Nuria Losada, María J. Martín, Patricia González
2017 — conf
Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors.
HPCS
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2017 Misc conf
Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters.
ICCS
Jorge González-Domínguez, María J. Martín
2017 J jnl
Parallel definition of tear film maps on distributed-memory clusters for the support of dry eye diagnosis.
Comput. Methods Programs Biomed.
Jorge González-Domínguez, Beatriz Remeseiro, María J. Martín
2017 J jnl
Resilient MPI applications using an application-level checkpointing framework and ULFM.
J. Supercomput.
Nuria Losada, Iván Cores, María J. Martín, Patricia González
2016 Misc conf
Acceleration of Tear Film Map Definition on Multicore Systems.
ICCS
Jorge González-Domínguez, Beatriz Remeseiro, María J. Martín
2016 — conf
An Application-Level Solution for the Dynamic Reconfiguration of MPI Applications.
VECPAR
Iván Cores, Patricia González, Emmanuel Jeannot, María J. Martín, Gabriel Rodríguez
2016 J jnl
Novel parallelization of simulated annealing and Hooke & Jeeves search algorithms for multicore systems with application to complex fisheries stock assessment models.
J. Comput. Sci.
Sergio Vázquez, María J. Martín, Basilio B. Fraguela, Andrés Gómez, Aurelio Rodríguez, Bjarki Þór Elvarsson
2016 Misc conf
Portable Application-level Checkpointing for Hybrid MPI-OpenMP Applications.
ICCS
Nuria Losada, María J. Martín, Gabriel Rodríguez, Patricia González
2016 J jnl
Reducing the overhead of an MPI application-level migration approach.
Parallel Comput.
Iván Cores, Monica Rodriguez, Patricia González, María J. Martín
2015 C conf
I/O Optimization in the Checkpointing of OpenMP Parallel Applications.
PDP
Nuria Losada, María J. Martín, Gabriel Rodríguez, Patricia González
2015 J jnl
On Processing Extreme Data.
Scalable Comput. Pract. Exp.
Dana Petcu, Gabriel Iuhasz, Daniel Pop, Domenico Talia, Jesús Carretero, Radu Prodan, Thomas Fahringer, Ivan Grasso, Ramón Doallo, María J. Martín, Basilio B. Fraguela, Roman Trobec, Matjaz Depolli, Francisco Almeida Rodriguez, Francisco de Sande, Georges Da Costa, Jean-Marc Pierson, Stergios V. Anastasiadis, Aristides Bartzokas, Christos J. Lolis, Pedro Gonçalves, Fabrice Brito, Nick Brown
2014 J jnl
A 2D algorithm with asymmetric workload for the UPC conjugate gradient method.
J. Supercomput.
Jorge González-Domínguez, Osni A. Marques, María J. Martín, Juan Touriño
2014 J jnl
Analysis of the Protein Domain and Domain Architecture Content in Fungi and Its Application in the Search of New Antifungal Targets.
PLoS Comput. Biol.
Alejandro Barrera, Ana Alastruey-Izquierdo, María J. Martín, Isabel Cuesta, Juan Antonio Vizcaíno
2014 J jnl
Constructing Performance Models for Dense Linear Algebra Algorithms on Cray XE Systems.
CoRR
Jorge González-Domínguez, Evangelos Georganas, Yili Zheng, María J. Martín
2014 J jnl
Extending an Application-Level Checkpointing Tool to Provide Fault Tolerance Support to OpenMP Applications.
J. Univers. Comput. Sci.
Nuria Losada, María J. Martín, Gabriel Rodríguez, Patricia González
2014 J jnl
Failure Avoidance in MPI Applications Using an Application-Level Approach.
Comput. J.
Iván Cores, Gabriel Rodríguez, Patricia González, María J. Martín
2014 C conf
Improving an MPI Application-Level Migration Approach through Checkpoint File Splitting.
SBAC-PAD
Monica Rodriguez, Iván Cores, Patricia González, María J. Martín
2014 J jnl
In-memory application-level checkpoint-based migration for MPI programs.
J. Supercomput.
Iván Cores, Gabriel Rodríguez, María J. Martín, Patricia González
2013 Misc conf
Achieving Checkpointing Global Consistency Through a Hybrid Compile Time and Runtime Protocol.
ICCS
Iván Cores, Gabriel Rodríguez, María J. Martín, Patricia González
2013 J jnl
Compiler-Assisted Checkpointing of Parallel Codes: The Cetus and LLVM Experience.
Int. J. Parallel Program.
Gabriel Rodríguez, María J. Martín, Patricia González, Juan Touriño, Ramon Doallo
2013 J jnl
Improving Scalability of Application-Level Checkpoint-Recovery by Reducing Checkpoint Sizes.
New Gener. Comput.
Iván Cores, Gabriel Rodríguez, María J. Martín, Patricia González, Roberto R. Osorio
2013 J jnl
Performance evaluation of sparse matrix products in UPC.
J. Supercomput.
Jorge González-Domínguez, Óscar García-López, Guillermo L. Taboada, María J. Martín, Juan Touriño
2013 J jnl
The Servet 3.0 benchmark suite: Characterization of network performance degradation.
Comput. Electr. Eng.
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Roberto R. Expósito, Juan Touriño
2012 J jnl
Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite.
Comput. Electr. Eng.
Jorge González-Domínguez, Guillermo L. Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño
2012 C conf
Design and Performance Issues of Cholesky and LU Solvers Using UPCBLAS.
ISPA
Jorge González-Domínguez, Osni A. Marques, María J. Martín, Guillermo L. Taboada, Juan Touriño
2012 C conf
Reducing Application-level Checkpoint File Sizes: Towards Scalable Fault Tolerance Solutions.
ISPA
Iván Cores, Gabriel Rodríguez, María J. Martín, Patricia González
2012 J jnl
Supervised Coursework as a Way of Improving Motivation in the Learning of Digital Electronics.
IEEE Trans. Educ.
Raúl Rengel, María J. Martín, Beatriz G. Vasallo
2012 J jnl
UPCBLAS: a library for parallel matrix computations in Unified Parallel C.
Concurr. Comput. Pract. Exp.
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Juan Touriño, Ramon Doallo, Damián A. Mallón, Brian Wibecan
2011 C conf
An Application Level Approach for Proactive Process Migration in MPI Applications.
PDCAT
Iván Cores, Gabriel Rodríguez, Patricia González, María J. Martín
2011 J jnl
Analysis of Performance-impacting Factors on Checkpointing Frameworks: The CPPC Case Study.
Comput. J.
Gabriel Rodríguez, María J. Martín, Patricia González, Juan Touriño
2011 Misc conf
Dense Triangular Solvers on Multicore Clusters using UPC.
ICCS
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Juan Touriño
2011 C conf
Extending the Globus Information Service with the Common Information Model.
ISPA
Iván Díaz, Gracia Fernández, Patricia González, María J. Martín, Juan Touriño
2010 C conf
Achieving Fault Tolerance on Grids with the CPPC Framework and the GridWay Metascheduler.
SBAC-PAD
Iván Cores, Gabriel Rodríguez, María J. Martín, Patricia González
2010 J jnl
CPPC: a compiler-assisted tool for portable checkpointing of message-passing applications.
Concurr. Comput. Pract. Exp.
Gabriel Rodríguez, María J. Martín, Patricia González, Juan Touriño, Ramon Doallo
2010 J jnl
Performance evaluation of an application-level checkpointing solution on grids.
Future Gener. Comput. Syst.
Gabriel Rodríguez, Xoán C. Pardo, María J. Martín, Patricia González
2010 A conf
Servet: A benchmark suite for autotuning on multicore clusters.
IPDPS
Jorge González-Domínguez, Guillermo L. Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño
2009 J jnl
A Heuristic Approach for the Automatic Insertion of Checkpoints in Message-Passing Codes.
J. Univers. Comput. Sci.
Gabriel Rodríguez, María J. Martín, Patricia González, Juan Touriño
2009 — conf
A Parallel Numerical Library for UPC.
Euro-Par
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Juan Touriño, Ramon Doallo, Andrés Gómez
2009 J jnl
Teaching Digital Systems in the Context of the New European Higher Education Area: A Practical Experience.
IEEE Trans. Educ.
Xoán C. Pardo, María J. Martín, Jose Rodrigo Sanjurjo, Carlos Vázquez Regueiro
2008 J jnl
A Fault Tolerance Solution for Sequential and MPI Applications on the Grid.
Scalable Comput. Pract. Exp.
Gabriel Rodríguez, Xoán C. Pardo, María J. Martín, Patricia González, Daniel Díaz
2008 B conf
Application-Level Fault-Tolerance Solutions for Grid Computing.
CCGRID
Daniel Díaz, Xoán C. Pardo, María J. Martín, Patricia González
2008 — conf
Integrating the common information model with MDS4.
GRID
Iván Díaz, Gracia Fernández, María J. Martín, Patricia González, Juan Touriño
2007 Misc conf
CPPC-G: Fault-Tolerant Applications on the Grid.
PPAM
Daniel Díaz, Xoán C. Pardo, María J. Martín, Patricia González, Gabriel Rodríguez
2007 B conf
Enhancing Fault-Tolerance of Large-Scale MPI Scientific Applications.
PaCT
Gabriel Rodríguez, Patricia González, María J. Martín, Juan Touriño
2007 C conf
Fault-tolerant solutions for a MPI compute intensive application.
PDP
José Carlos Mouriño, María J. Martín, Patricia González, Ramon Doallo
2006 J jnl
Controller/Precompiler for Portable Checkpointing.
IEICE Trans. Inf. Syst.
Gabriel Rodríguez, María J. Martín, Patricia González, Juan Touriño
2006 — conf
Dynamic Load-Balancing for the STEM-II Air Quality Model.
ICCSA (1)
José Carlos Mouriño, María J. Martín, Patricia González, Ramon Doallo
2006 J jnl
High Performance Air Quality Simulation in the European CrossGrid Project.
Comput. Artif. Intell.
José Carlos Mouriño, María J. Martín, Patricia González, Ramon Doallo
2005 J jnl
A Grid Portal for an Undergraduate Parallel Programming Course.
IEEE Trans. Educ.
Juan Touriño, María J. Martín, Jacobo Tarrío, Manuel Arenaz
2005 — conf
Modeling Execution Time of Selected Computation and Communication Kernels on Grids.
EGC
Marcos Boullón, José Carlos Cabaleiro, Ramon Doallo, Patricia González, Diego Rodríguez Martínez, María J. Martín, José Carlos Mouriño, Tomás F. Pena, Francisco F. Rivera
2005 J jnl
Runtime characterisation of irregular accesses applied to parallelisation of irregular reductions.
Int. J. Comput. Sci. Eng.
David E. Singh, María J. Martín, Francisco F. Rivera
2004 J jnl
A Grid Portal to Support High-Performance Scientific Computing on Distributed Resources.
IEICE Trans. Inf. Syst.
Jacobo Tarrío, Juan Touriño, María J. Martín, Patricia González, Ramon Doallo
2004 Misc conf
Air Pollution Modeling in the CrossGrid Project.
International Conference on Computational Science
José Carlos Mouriño, María J. Martín, Patricia González, Ramon Doallo
2004 J jnl
High Performance Air Pollution Simulation Using OpenMP.
J. Supercomput.
María J. Martín, Marta Parada, Ramon Doallo
2003 — conf
A Grid-Enabled Air Quality Simulation.
European Across Grids Conference
José Carlos Mouriño, María J. Martín, Patricia González, Marcos Boullón, José Carlos Cabaleiro, Tomás F. Pena, Francisco F. Rivera, Ramon Doallo
2003 Misc conf
Automatic Generation of Optimized Parallel Codes for N-body Simulations.
PPAM
David E. Singh, María J. Martín, Francisco F. Rivera
2003 J jnl
High performance air pollution modeling for a power plant environment.
Parallel Comput.
María J. Martín, David E. Singh, José Carlos Mouriño, Francisco F. Rivera, Ramon Doallo, Javier D. Bruguera
2003 — conf
Increasing the Parallelism of Irregular Loops with Dependences.
Euro-Par
David E. Singh, María J. Martín, Francisco F. Rivera
2003 A conf
Increasing the Throughput of Available Resources Using Management Tools Based on Grid Technologies.
IPDPS
Patricia González, María J. Martín, José Carlos Mouriño, Ramon Doallo
2002 — conf
A Cluster-Based Solution for a High Performance Air Quality Simulation.
PARA
José Carlos Mouriño, Patricia González, María J. Martín, Ramon Doallo
2002 B conf
Exploiting Locality in the Run-Time Parallelization of Irregular Loops.
ICPP
María J. Martín, David E. Singh, Juan Touriño, Francisco F. Rivera
2002 — conf
High Performance Air Pollution Simulation Using OpenMP.
ICPP Workshops
Marta Parada, María J. Martín, Ramon Doallo
2002 — conf
Improving Locality in the Parallelization of Doacross Loops (Research Note).
Euro-Par
María J. Martín, David E. Singh, Juan Touriño, Francisco F. Rivera
2001 J jnl
An lonised-impurity Scattering Model for 3D Monte Carlo Device Simulation with Discrete Impurity Distribution.
VLSI Design
S. Barraud, P. Dollfus, S. Galdin, Raúl Rengel, María J. Martín, J. E. Velázquez
2001 — conf
Parallelization of the STEM-II Air Quality Model.
HPCN Europe
José Carlos Mouriño, David E. Singh, María J. Martín, J. M. Eiroa, Francisco F. Rivera, Ramon Doallo, Javier D. Bruguera
2001 — conf
Run-Time Characterization of Irregular Accesses Applied to Parallelization of Irregular Reductions.
ICPP Workshops
David E. Singh, Francisco F. Rivera, María J. Martín
2001 — conf
The STEM-II Air Quality Model on a Distributed Memory System.
ICPP Workshops
José Carlos Mouriño, María J. Martín, Ramon Doallo, David E. Singh, Francisco F. Rivera, Javier D. Bruguera
2000 — conf
The Envelope of a Digital Curve Based on Dominant Points.
DGCI
David E. Singh, María J. Martín, Francisco F. Rivera
1999 — conf
Left-looking strategy for the sparse modified Cholesky factorization on NUMA multiprocessors.
PARCO
María J. Martín, Inmaculada Pardines, Francisco F. Rivera
1999 — conf
Scheduling of Algorithms Based on Elimination Trees on NUMA Systems.
Euro-Par
María J. Martín, Inmaculada Pardines, Francisco F. Rivera
1997 — conf
Modelling an Asynchronous Parallel Modified Cholesky Factorization for Sparse Matrices.
Euro-PDS
María J. Martín, Francisco F. Rivera
1997 — conf
Static Mapping of the Multifrontal Method Applied to the Modified Cholesky Factorization for Sparse Matrices.
PARCO
Inmaculada Pardines, María J. Martín, Margarita Amor, Francisco F. Rivera
1995 — conf
Image Template Matching on Distributed Memory and Vector Multiprocessors.
PARCO
Vicente Blanco Pérez, María J. Martín, Dora Blanco Heras, Oscar G. Plata, Francisco F. Rivera
1994 — conf
Vectorization of the Radix r Self-Sorting FFT.
CONPAR
Margarita Amor, María J. Martín, Dora Blanco Heras, Oscar G. Plata, Francisco F. Rivera, Francisco Argüello