Martina Kutmon

15 papers Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2021 J jnl
Comparison of metabolic states using genome-scale metabolic models.
PLoS Comput. Biol.
Chaitra Sarathy, Marian Breuer, Martina Kutmon, Michiel E. Adriaens, Chris T. A. Evelo, Ilja C. W. Arts
2021 J jnl
Ten simple rules for creating reusable pathway models for computational analysis and visualization.
PLoS Comput. Biol.
Kristina Hanspers, Martina Kutmon, Susan L. Coort, Daniela Digles, Lauren J. Dupuis, Friederike Ehrhart, Finterly Hu, Elisson N. Lopes, Marvin Martens, Nhung Pham, Woosub Shin, Denise N. Slenter, Andra Waagmeester, Egon L. Willighagen, Laurent A. Winckers, Chris T. A. Evelo, Alexander R. Pico
2021 J jnl
WikiPathways: connecting communities.
Nucleic Acids Res.
Marvin Martens, Ammar Ammar, Anders Riutta, Andra Waagmeester, Denise N. Slenter, Kristina Hanspers, Ryan A. Miller, Daniela Digles, Elisson N. Lopes, Friederike Ehrhart, Lauren J. Dupuis, Laurent A. Winckers, Susan L. Coort, Egon L. Willighagen, Chris T. A. Evelo, Alexander R. Pico, Martina Kutmon
2018 J jnl
CyTargetLinker app update: A flexible solution for network extension in Cytoscape.
F1000Research
Martina Kutmon, Friederike Ehrhart, Egon L. Willighagen, Chris T. A. Evelo, Susan L. Coort
2018 J jnl
Providing gene-to-variant and variant-to-gene database identifier mappings to use with BridgeDb mapping services.
F1000Research
Friederike Ehrhart, Jonathan Mélius, Elisa Cirillo, Martina Kutmon, Egon L. Willighagen, Susan L. Coort, Leopold M. G. Curfs, Chris T. A. Evelo
2018 J jnl
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research.
Nucleic Acids Res.
Denise N. Slenter, Martina Kutmon, Kristina Hanspers, Anders Riutta, Jacob Windsor, Nuno Nunes, Jonathan Mélius, Elisa Cirillo, Susan L. Coort, Daniela Digles, Friederike Ehrhart, Pieter Giesbertz, Marianthi Kalafati, Marvin Martens, Ryan A. Miller, Kozo Nishida, Linda Rieswijk, Andra Waagmeester, Lars M. T. Eijssen, Chris T. A. Evelo, Alexander R. Pico, Egon L. Willighagen
2017 — conf
Visualizing Metabolomics Data in Directed Biological Networks.
SWAT4LS
Ryan A. Miller, Denise N. Slenter, Martina Kutmon, Jonathan Mélius, Georg Summer, Chris T. A. Evelo, Egon L. Willighagen
2016 J jnl
Reactome from a WikiPathways Perspective.
PLoS Comput. Biol.
Anwesha Bohler, Guanming Wu, Martina Kutmon, Leontius Adhika Pradhana, Susan L. Coort, Kristina Hanspers, Robin Haw, Alexander R. Pico, Chris T. A. Evelo
2016 J jnl
The systems biology format converter.
BMC Bioinform.
Nicolas Rodriguez, Jean-Baptiste Pettit, Piero Dalle Pezze, Lu Li, Arnaud Henry, Martijn P. van Iersel, Gaël Jalowicki, Martina Kutmon, Kedar Nath Natarajan, David Tolnay, Melanie I. Stefan, Chris T. A. Evelo, Nicolas Le Novère
2016 J jnl
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.
PLoS Comput. Biol.
Andra Waagmeester, Martina Kutmon, Anders Riutta, Ryan A. Miller, Egon L. Willighagen, Chris T. A. Evelo, Alexander R. Pico
2016 J jnl
WikiPathways: capturing the full diversity of pathway knowledge.
Nucleic Acids Res.
Martina Kutmon, Anders Riutta, Nuno Nunes, Kristina Hanspers, Egon L. Willighagen, Anwesha Bohler, Jonathan Mélius, Andra Waagmeester, Sravanthi R. Sinha, Ryan A. Miller, Susan L. Coort, Elisa Cirillo, Bart Smeets, Chris T. A. Evelo, Alexander R. Pico
2015 J jnl
Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment.
BMC Bioinform.
Anwesha Bohler, Lars M. T. Eijssen, Martijn P. van Iersel, Christ Leemans, Egon L. Willighagen, Martina Kutmon, Magali Jaillard, Chris T. A. Evelo
2015 J jnl
PathVisio 3: An Extendable Pathway Analysis Toolbox.
PLoS Comput. Biol.
Martina Kutmon, Martijn P. van Iersel, Anwesha Bohler, Thomas Kelder, Nuno Nunes, Alexander R. Pico, Chris T. A. Evelo
2014 J jnl
Integrated Visualization of a Multi-omics Study of Starvation in Mouse Intestine.
J. Integr. Bioinform.
Martijn P. van Iersel, Milka Sokolovic, Kaatje Lenaerts, Martina Kutmon, Freek G. Bouwman, Wouter H. Lamers, Edwin C. M. Mariman, Chris T. A. Evelo
2012 J jnl
WikiPathways: building research communities on biological pathways.
Nucleic Acids Res.
Thomas Kelder, Martijn P. van Iersel, Kristina Hanspers, Martina Kutmon, Bruce R. Conklin, Chris T. A. Evelo, Alexander R. Pico