Martin Weigt - RankMe

34 papers Journal 31Unranked 1

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	adabmDCA 2.0 - a flexible but easy-to-use package for Direct Coupling Analysis. CoRR Lorenzo Rosset, Roberto Netti, Anna Paola Muntoni, Martin Weigt, Francesco Zamponi
2023	J	`jnl`	Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins. PLoS Comput. Biol. Carlos A. Gandarilla-Pérez, Sergio Pinilla, Anne-Florence Bitbol, Martin Weigt
2023	J	`jnl`	Generating interacting protein sequences using domain-to-domain translation. Bioinform. Barthélémy Meynard-Piganeau, Caterina Fabbri, Martin Weigt, Andrea Pagnani, Christoph Feinauer
2023	J	`jnl`	Machine-learning-assisted Monte Carlo fails at sampling computationally hard problems. Mach. Learn. Sci. Technol. Simone Ciarella, Jeanne Trinquier, Martin Weigt, Francesco Zamponi
2021	J	`jnl`	On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins. PLoS Comput. Biol. Edwin Rodriguez Horta, Martin Weigt
2021	J	`jnl`	adabmDCA: adaptive Boltzmann machine learning for biological sequences. BMC Bioinform. Anna Paola Muntoni, Andrea Pagnani, Martin Weigt, Francesco Zamponi
2020	J	`jnl`	FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution. PLoS Comput. Biol. Maureen Muscat, Giancarlo Croce, Edoardo Sarti, Martin Weigt
2020	—	`ch.`	Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching. Protein-Protein Interaction Networks Thomas Gueudré, Carlo Baldassi, Andrea Pagnani, Martin Weigt
2020	J	`jnl`	Sparse generative modeling of protein-sequence families. CoRR Pierre Barrat-Charlaix, Anna Paola Muntoni, Kai Shimagaki, Martin Weigt, Francesco Zamponi
2019	J	`jnl`	A multi-scale coevolutionary approach to predict interactions between protein domains. PLoS Comput. Biol. Giancarlo Croce, Thomas Gueudré, Maria Ruiz-Cuevas, Victoria Keidel, Matteo Figliuzzi, Hendrik Szurmant, Martin Weigt
2019	J	`jnl`	Phylogenetic correlations can suffice to infer protein partners from sequences. PLoS Comput. Biol. Guillaume Marmier, Martin Weigt, Anne-Florence Bitbol
2019	J	`jnl`	Toward Inferring Potts Models for Phylogenetically Correlated Sequence Data. Entropy Edwin Rodriguez Horta, Pierre Barrat-Charlaix, Martin Weigt
2018	J	`jnl`	Meet-U: Educating through research immersion. PLoS Comput. Biol. Nika Abdollahi, Alexandre Albani, Éric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune, Samia Djerroud, Pauline Fourgoux, Nadège Guiglielmoni, Jeanne Laurentie, Nathalie Lehmann, Camille Lochard, Rémi Montagne, Vasiliki Myrodia, Vaitea Opuu, Elise Parey, Lélia Polit, Sylvain Privé, Chloé Quignot, Maria Ruiz-Cuevas, Mariam Sissoko, Nicolas Sompairac, Audrey Vallerix, Violaine Verrecchia, Marc Delarue, Raphaël Guérois, Yann Ponty, Sophie Sacquin-Mora, Alessandra Carbone, Christine Froidevaux, Stéphane Le Crom, Olivier Lespinet, Martin Weigt, Samer Abboud, Juliana S. Bernardes, Guillaume Bouvier, Chloé Dequeker, Arnaud Ferré, Patrick Fuchs, Gaëlle Lelandais, Pierre Poulain, Hugues Richard, Hugo Schweke, Elodie Laine, Anne Lopes
2013	J	`jnl`	From Principal Component to Direct Coupling Analysis of Coevolution in Proteins: Low-Eigenvalue Modes are Needed for Structure Prediction. PLoS Comput. Biol. Simona Cocco, Rémi Monasson, Martin Weigt
2013	J	`jnl`	Perturbation Biology: Inferring Signaling Networks in Cellular Systems. PLoS Comput. Biol. Evan J. Molinelli, Anil Korkut, Weiqing Wang, Martin L. Miller, Nicholas Paul Gauthier, Xiaohong Jing, Poorvi Kaushik, Qin He, Gordon B. Mills, David B. Solit, Christine A. Pratilas, Martin Weigt, Alfredo Braunstein, Andrea Pagnani, Riccardo Zecchina, Chris Sander
2010	J	`jnl`	Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinform. Marc Bailly-Bechet, Alfredo Braunstein, Andrea Pagnani, Martin Weigt, Riccardo Zecchina
2009	J	`jnl`	Aligning graphs and finding substructures by message passing CoRR S. Bradde, Alfredo Braunstein, H. Mahmoudi, F. Tria, Martin Weigt, Riccardo Zecchina
2009	—	`conf`	The importance of dilution in the inference of biological networks. Allerton Alejandro Lage-Castellanos, Andrea Pagnani, Martin Weigt
2007	J	`jnl`	Clustering by soft-constraint affinity propagation: applications to gene-expression data. Bioinform. Michele Leone, Sumedha, Martin Weigt
2006	—	`ch.`	Constraint Satisfaction by Survey Propagation. Computational Complexity and Statistical Physics Alfredo Braunstein, Marc Mézard, Martin Weigt, Riccardo Zecchina
2006	J	`jnl`	Message passing for vertex covers CoRR Martin Weigt, Haijun Zhou
2005	J	`jnl`	Phase transition and finite-size scaling in the vertex-cover problem. Comput. Phys. Commun. Alexander K. Hartmann, Wolfgang Barthel, Martin Weigt
2004	J	`jnl`	Threshold values, stability analysis and high-q asymptotics for the coloring problem on random graphs CoRR Florent Krzakala, Andrea Pagnani, Martin Weigt
2003	J	`jnl`	Solving satisfiability problems by fluctuations: The dynamics of stochastic local search algorithms CoRR Wolfgang Barthel, Alexander K. Hartmann, Martin Weigt
2002	J	`jnl`	Coloring random graphs CoRR Roberto Mulet, Andrea Pagnani, Martin Weigt, Riccardo Zecchina
2002	J	`jnl`	Computational complexity arising from degree correlations in networks CoRR Alexei Vázquez, Martin Weigt
2002	J	`jnl`	Constraint Satisfaction by Survey Propagation CoRR Alfredo Braunstein, Marc Mézard, Martin Weigt, Riccardo Zecchina
2001	J	`jnl`	Hiding solutions in random satisfiability problems: A statistical mechanics approach CoRR Wolfgang Barthel, Alexander K. Hartmann, Michele Leone, Federico Ricci-Tersenghi, Martin Weigt, Riccardo Zecchina
2001	J	`jnl`	Statistical mechanics perspective on the phase transition in vertex covering of finite-connectivity random graphs. Theor. Comput. Sci. Alexander K. Hartmann, Martin Weigt
2000	J	`jnl`	Simplest random K-satisfiability problem CoRR Federico Ricci-Tersenghi, Martin Weigt, Riccardo Zecchina
2000	J	`jnl`	Statistical mechanics perspective on the phase transition in vertex covering finite-connectivity random graphs CoRR Alexander K. Hartmann, Martin Weigt
2000	J	`jnl`	The number of guards needed by a museum: A phase transition in vertex covering of random graphs CoRR Martin Weigt, Alexander K. Hartmann
2000	J	`jnl`	Typical solution time for a vertex-covering algorithm on finite-connectivity random graphs CoRR Martin Weigt, Alexander K. Hartmann
1999	J	`jnl`	A variational description of the ground state structure in random satisfiability problems CoRR Giulio Biroli, Rémi Monasson, Martin Weigt