Martin Vingron

152 papers A 1B 13C 6Journal 106Unranked 23
YearRankTypeTitle / Venue / Authors
2023 J jnl
2023 ISCB Overton Prize: Jingyi Jessica Li.
Bioinform.
Christiana N. Fogg, Diane E. Kovats, Martin Vingron
2023 J jnl
2023 ISCB accomplishments by a senior scientist award: Mark Gerstein.
Bioinform.
Christiana N. Fogg, Diane E. Kovats, Martin Vingron
2023 J jnl
2023 ISCB innovator award: Dana Pe'er.
Bioinform.
Christiana N. Fogg, Diane E. Kovats, Martin Vingron
2023 J jnl
2023 Outstanding Contributions to ISCB Award: Shoba Ranganathan.
Bioinform.
Christiana N. Fogg, Diane E. Kovats, Martin Vingron
2023 J jnl
CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction.
Bioinform.
Trisevgeni Rapakoulia, Sara Lopez Ruiz De Vargas, Persia Akbari Omgba, Verena Laupert, Igor Ulitsky, Martin Vingron
2023 J jnl
IsoTools: a flexible workflow for long-read transcriptome sequencing analysis.
Bioinform.
Matthias Lienhard, Twan van den Beucken, Bernd Timmermann, Myriam Hochradel, Stefan Börno, Florian Caiment, Martin Vingron, Ralf Herwig
2022 J jnl
2022 ISCB Accomplishments by a Senior Scientist Award: Ron Shamir.
Bioinform.
Christina Fogg, Diane E. Kovats, Martin Vingron
2022 J jnl
2022 ISCB Innovator Award: Núria López-Bigas.
Bioinform.
Christina Fogg, Diane E. Kovats, Martin Vingron
2022 J jnl
2022 ISCB Overton Prize: Po-Ru Loh.
Bioinform.
Christina Fogg, Diane E. Kovats, Martin Vingron
2022 J jnl
2022 Outstanding Contributions to ISCB Award: Reinhard Schneider.
Bioinform.
Christina Fogg, Diane E. Kovats, Martin Vingron
2022 J jnl
Effect of imputation on gene network reconstruction from single-cell RNA-seq data.
Patterns
Lam-Ha Ly, Martin Vingron
2022 J jnl
Michael Waterman's Contributions to Computational Biology and Bioinformatics.
J. Comput. Biol.
Pavel A. Pevzner, Martin Vingron, Christian M. Reidys, Fengzhu Sun, Sorin Istrail
2022 J jnl
Special Issue: Professor Michael Waterman's 80th Birthday, Part 1.
J. Comput. Biol.
Sorin Istrail, Pavel A. Pevzner, Fengzhu Sun, Martin Vingron
2021 J jnl
ISCB Honors 2021 Award Recipients Peer Bork, Barbara Engelhardt, Ben Raphael, Teresa Attwood.
Bioinform.
Christiana N. Fogg, Diane E. Kovats, Martin Vingron
2021 J jnl
SVIM-asm: structural variant detection from haploid and diploid genome assemblies.
Bioinform.
David Heller, Martin Vingron
2020 J jnl
ModHMM: A Modular Supra-Bayesian Genome Segmentation Method.
J. Comput. Biol.
Philipp Benner, Martin Vingron
2020 J jnl
Ranbow: A fast and accurate method for polyploid haplotype reconstruction.
PLoS Comput. Biol.
M-Hossein Moeinzadeh, Jun Yang, Evgeny Muzychenko, Giuseppe Gallone, David Heller, Knut Reinert, Stefan A. Haas, Martin Vingron
2019 J jnl
DNA Motif Match Statistics Without Poisson Approximation.
J. Comput. Biol.
Wolfgang Kopp, Martin Vingron
2019 B conf
ModHMM: A Modular Supra-Bayesian Genome Segmentation Method.
RECOMB
Philipp Benner, Martin Vingron
2019 J jnl
Predicting enhancers in mammalian genomes using supervised hidden Markov models.
BMC Bioinform.
Tobias Zehnder, Philipp Benner, Martin Vingron
2019 J jnl
SVIM: structural variant identification using mapped long reads.
Bioinform.
David Heller, Martin Vingron
2019 J jnl
The Distance Precision Matrix: computing networks from non-linear relationships.
Bioinform.
Mahsa Ghanbari, Julia Lasserre, Martin Vingron
2018 J jnl
Sparse-Group Bayesian Feature Selection Using Expectation Propagation for Signal Recovery and Network Reconstruction.
CoRR
Edgar Steiger, Martin Vingron
2018 J jnl
coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers.
PLoS Comput. Biol.
Alena van Bömmel, Michael I. Love, Ho-Ryun Chung, Martin Vingron
2017 J jnl
An improved compound Poisson model for the number of motif hits in DNA sequences.
Bioinform.
Wolfgang Kopp, Martin Vingron
2016 J jnl
Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns.
PLoS Comput. Biol.
Matthew R. Huska, Martin Vingron
2016 J jnl
Time-Dependent Gene Network Modelling by Sequential Monte Carlo.
IEEE ACM Trans. Comput. Biol. Bioinform.
Sergiy Ancherbak, Ercan E. Kuruoglu, Martin Vingron
2015 J jnl
Reconstruction of gene networks using prior knowledge.
BMC Syst. Biol.
Mahsa Ghanbari, Julia Lasserre, Martin Vingron
2015 J jnl
histoneHMM: Differential analysis of histone modifications with broad genomic footprints.
BMC Bioinform.
Matthias Heinig, Maria Colomé-Tatché, Aaron Taudt, Carola Rintisch, Sebastian Schafer, Michal Pravenec, Norbert Hübner, Martin Vingron, Frank Johannes
2014 J jnl
Condition-specific target prediction from motifs and expression.
Bioinform.
Guofeng Meng, Martin Vingron
2014 J jnl
ISCB/SPRINGER series in computational biology.
Bioinform.
Andreas W. M. Dress, Michal Linial, Olga G. Troyanskaya, Martin Vingron
2014 J jnl
Inferring the paths of somatic evolution in cancer.
Bioinform.
Navodit Misra, Ewa Szczurek, Martin Vingron
2013 J jnl
Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks.
PLoS Comput. Biol.
Julia Lasserre, Ho-Ryun Chung, Martin Vingron
2013 J jnl
Inferring nucleosome positions with their histone mark annotation from ChIP data.
Bioinform.
Alessandro Mammana, Martin Vingron, Ho-Ryun Chung
2012 J jnl
Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.
Bioinform.
Ruping Sun, Michael I. Love, Tomasz Zemojtel, Anne-Katrin Emde, Ho-Ryun Chung, Martin Vingron, Stefan A. Haas
2012 J jnl
Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.
Bioinform.
Anne-Katrin Emde, Marcel H. Schulz, David Weese, Ruping Sun, Martin Vingron, Vera M. Kalscheuer, Stefan A. Haas, Knut Reinert
2012 J jnl
Detection of interacting transcription factors in human tissues using predicted DNA binding affinity.
BMC Genom.
Alena Mysicková, Martin Vingron
2012 J jnl
Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts.
Bioinform.
Jonathan Göke, Marcel H. Schulz, Julia Lasserre, Martin Vingron
2012 J jnl
Predicting the outcome of renal transplantation.
J. Am. Medical Informatics Assoc.
Julia Lasserre, Steffen Arnold, Martin Vingron, Petra Reinke, Carl Hinrichs
2012 J jnl
R2KS: A Novel Measure for Comparing Gene Expression Based on Ranked Gene Lists.
J. Comput. Biol.
Shengyu Ni, Martin Vingron
2011 J jnl
Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies Conserved Enhancers Active in Early Embryonic Development.
PLoS Comput. Biol.
Jonathan Göke, Marc Jung, Sarah Behrens, Lukas Chavez, Sean O'Keeffe, Bernd Timmermann, Hans Lehrach, James Adjaye, Martin Vingron
2011 B conf
Computational Regulatory Genomics.
CPM
Martin Vingron
2011 J jnl
DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach.
Algorithms Mol. Biol.
Akdes Serin, Martin Vingron
2011 J jnl
Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data.
BMC Bioinform.
Ewa Szczurek, Florian Markowetz, Irit Gat-Viks, Przemyslaw Biecek, Jerzy Tiuryn, Martin Vingron
2011 J jnl
Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series.
BMC Bioinform.
Yuan Yuan, Yi-Ping Phoebe Chen, Shengyu Ni, Augix Guohua Xu, Lin Tang, Martin Vingron, Mehmet Somel, Philipp Khaitovich
2010 J jnl
A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes.
BMC Bioinform.
Guofeng Meng, Axel Mosig, Martin Vingron
2010 J jnl
Introducing Knowledge into Differential Expression Analysis.
J. Comput. Biol.
Ewa Szczurek, Przemyslaw Biecek, Jerzy Tiuryn, Martin Vingron
2010 J jnl
Studying the Evolution of Promoter Sequences: A Waiting Time Problem.
J. Comput. Biol.
Sarah Behrens, Martin Vingron
2010 J jnl
TransFind - predicting transcriptional regulators for gene sets.
Nucleic Acids Res.
Szymon M. Kielbasa, Holger Klein, Helge G. Roider, Martin Vingron, Nils Blüthgen
2009 J jnl
Comparison of sequence-dependent tiling array normalization approaches.
BMC Bioinform.
Ho-Ryun Chung, Martin Vingron
2009 J jnl
Evidence for Gene-Specific Rather Than Transcription Rate-Dependent Histone H3 Exchange in Yeast Coding Regions.
PLoS Comput. Biol.
Irit Gat-Viks, Martin Vingron
2009 C conf
Exact Score Distribution Computation for Similarity Searches in Ontologies.
WABI
Marcel H. Schulz, Sebastian Köhler, Sebastian Bauer, Martin Vingron, Peter N. Robinson
2009 J jnl
Maximum Similarity: A New Formulation of Phylogenetic Reconstruction.
J. Comput. Biol.
Xiaoqiu Huang, Martin Vingron
2009 J jnl
PASTAA: identifying transcription factors associated with sets of co-regulated genes.
Bioinform.
Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas
2009 J jnl
Statistical detection of cooperative transcription factors with similarity adjustment.
Bioinform.
Utz J. Pape, Holger Klein, Martin Vingron
2008 J jnl
Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands.
J. Comput. Biol.
Utz J. Pape, Sven Rahmann, Fengzhu Sun, Martin Vingron
2008 C conf
Fast and Adaptive Variable Order Markov Chain Construction.
WABI
Marcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron
2008 J jnl
Natural similarity measures between position frequency matrices with an application to clustering.
Bioinform.
Utz J. Pape, Sven Rahmann, Martin Vingron
2008 J jnl
Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration.
Bioinform.
Sebastian Bauer, Steffen Grossmann, Martin Vingron, Peter N. Robinson
2008 J jnl
Prioritization of gene regulatory interactions from large-scale modules in yeast.
BMC Bioinform.
Ho-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron
2008 B ed.
Research in Computational Molecular Biology, 12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings
RECOMB
Martin Vingron, Limsoon Wong
2008 — conf
Statistical Detection of Cooperative Transcription Factors with Similarity Adjustment.
German Conference on Bioinformatics
Utz J. Pape, Holger Klein, Martin Vingron
2008 J jnl
Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions.
PLoS Comput. Biol.
Thomas Manke, Helge G. Roider, Martin Vingron
2008 J jnl
The BREW workshop series: a stimulating experience in PhD education.
Briefings Bioinform.
Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron
2007 — conf
A physical model for tiling array analysis.
ISMB/ECCB (Supplement of Bioinformatics)
Ho-Ryun Chung, Dennis Kostka, Martin Vingron
2007 J jnl
Developments in CORG: a gene-centric comparative genomics resource.
Nucleic Acids Res.
Christoph Dieterich, M. W. Franz, Martin Vingron
2007 J jnl
Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics.
J. Comput. Biol.
Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt
2007 J jnl
Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis.
Bioinform.
Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron
2007 J jnl
Integer linear programming approaches for non-unique probe selection.
Discret. Appl. Math.
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
2007 J jnl
Predicting transcription factor affinities to DNA from a biophysical model.
Bioinform.
Helge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron
2007 — ed.
Proceedings of the German Conference on Bioinformatics, GCB 2007, September 26-28, 2007, Potsdam, Germany.
German Conference on Bioinformatics
Claudia Falter, Alexander Schliep, Joachim Selbig, Martin Vingron, Dirk Walther
2007 J jnl
Simultaneous alignment and annotation of
Bioinform.
Abha Singh Bais, Steffen Grossmann, Martin Vingron
2007 J jnl
The Otto Warburg International Summer School and Workshop on Networks and Regulation.
BMC Bioinform.
Peter F. Arndt, Martin Vingron
2006 J jnl
A joint model of regulatory and metabolic networks.
BMC Bioinform.
Chen-Hsiang Yeang, Martin Vingron
2006 B conf
Alignment Statistics for Long-Range Correlated Genomic Sequences.
RECOMB
Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt
2006 B conf
An Improved Algorithm for the Macro-evolutionary Phylogeny Problem.
CPM
Behshad Behzadi, Martin Vingron
2006 B conf
An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets.
RECOMB
Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron
2006 J jnl
Family specific rates of protein evolution.
Bioinform.
Hannes Luz, Martin Vingron
2006 — ed.
Managing and Mining Genome Information: Frontiers in Bioinformatics, 30. October - 4. November 2005
Managing and Mining Genome Information
Jacek Blazewicz, Johann Christoph Freytag, Martin Vingron
2006 J jnl
Normalization and quantification of differential expression in gene expression microarrays.
Briefings Bioinform.
Christine Steinhoff, Martin Vingron
2006 — conf
Reconstructing Domain Compositions of Ancestral Multi-domain Proteins.
Comparative Genomics
Behshad Behzadi, Martin Vingron
2005 — conf
05441 Abstracts Collection - Managing and Mining Genome Information: Frontiers in Bioinformatics.
Managing and Mining Genome Information
Jacek Blazewicz, Johann Christoph Freytag, Martin Vingron
2005 — conf
05441 Executive Summary - Managing and Mining Genome Information: Frontiers in Bioinformatics.
Managing and Mining Genome Information
Jacek Blazewicz, Johann Christoph Freytag, Martin Vingron
2005 — conf
Familz specific rates of protein evolution.
German Conference on Bioinformatics
Hannes Luz, Martin Vingron
2005 J jnl
Large scale hierarchical clustering of protein sequences.
BMC Bioinform.
Antje Krause, Jens Stoye, Martin Vingron
2005 J jnl
SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors.
Bioinform.
Morris Michael, Christoph Dieterich, Martin Vingron
2005 J jnl
SVC: structured visualization of evolutionary sequence conservation.
Nucleic Acids Res.
Stefan Roepcke, Petko Fiziev, P. H. Seeburg, Martin Vingron
2005 J jnl
T-Reg Comparator: an analysis tool for the comparison of position weight matrices.
Nucleic Acids Res.
Stefan Roepcke, Steffen Grossmann, Sven Rahmann, Martin Vingron
2005 J jnl
T-STAG: resource and web-interface for tissue-specific transcripts and genes.
Nucleic Acids Res.
Shobhit Gupta, Martin Vingron, Stefan A. Haas
2005 J jnl
The SYSTERS Protein Family Database in 2005.
Nucleic Acids Res.
Thomas Meinel, Antje Krause, Hannes Luz, Martin Vingron, Eike Staub
2004 J jnl
Annotating significant pairs of transcription factor binding sites in regulatory DNA.
Silico Biol.
Katja Rateitschak, Tobias Müller, Martin Vingron
2004 — conf
Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome.
Regulatory Genomics
Thomas Manke, Christoph Dieterich, Martin Vingron
2004 — conf
Functional inference from non-random distributions of conserved predicted transcription factor binding sites.
ISMB/ECCB (Supplement of Bioinformatics)
Christoph Dieterich, Sven Rahmann, Martin Vingron
2004 J jnl
Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays (Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays).
it Inf. Technol.
Anja von Heydebreck, Silke Sperling, Bogac Kaynak, Hans Lehrach, Martin Vingron
2004 J jnl
Genome wide identification and classification of alternative splicing based on EST data.
Bioinform.
Shobhit Gupta, Dorothea Zink, Bernhard Korn, Martin Vingron, Stefan A. Haas
2004 J jnl
IntAct: an open source molecular interaction database.
Nucleic Acids Res.
Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler
2004 — conf
Optimal robust non-unique probe selection using Integer Linear Programming.
ISMB/ECCB (Supplement of Bioinformatics)
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
2004 J jnl
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.
Bioinform.
Torsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer
2003 J jnl
CORG: a database for COmparative Regulatory Genomics.
Nucleic Acids Res.
Christoph Dieterich, Haiyan Wang, Katja Rateitschak, Hannes Luz, Martin Vingron
2003 C conf
Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites.
ECCB
Christoph Dieterich, Ralf Herwig, Martin Vingron
2003 B conf
Gaussian Mixture Density Estimation Applied to Microarray Data.
IDA
Christine Steinhoff, Tobias Müller, Ulrike A. Nuber, Martin Vingron
2003 J jnl
Molecular phylogenetics: parallelized parameter estimation and quartet puzzling.
J. Parallel Distributed Comput.
Heiko A. Schmidt, Ekkehard Petzold, Martin Vingron, Arndt von Haeseler
2003 B ed.
Proceedings of the Sventh Annual International Conference on Computational Biology, RECOMB 2003, Berlin, Germany, April 10-13, 2003
RECOMB
Martin Vingron, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, Webb Miller
2003 — conf
The SYSTERS protein family database: Taxon-related protein family size distributions and singleton frequencies.
German Conference on Bioinformatics
Thomas Meinel, Martin Vingron, Antje Krause
2003 J jnl
Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions.
Discret. Appl. Math.
Benno Schwikowski, Martin Vingron
2002 C conf
Annotating regulatory DNA based on man-mouse genomic comparison.
ECCB
Christoph Dieterich, Brian Cusack, Haiyan Wang, Katja Rateitschak, Antje Krause, Martin Vingron
2002 J jnl
Bioinformatics research and education in Germany.
Silico Biol.
Dietmar Schomburg, Martin Vingron
2002 J jnl
Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis.
Bioinform.
Kurt Fellenberg, Nicole C. Hauser, Benedikt Brors, Jörg D. Hoheisel, Martin Vingron
2002 C conf
Proteome analysis based on motif statistics.
ECCB
Pierre Nicodème, T. Doerks, Martin Vingron
2002 J jnl
SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein.
Nucleic Acids Res.
Antje Krause, Stefan A. Haas, Eivind Coward, Martin Vingron
2002 J jnl
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.
Bioinform.
Heiko A. Schmidt, Korbinian Strimmer, Martin Vingron, Arndt von Haeseler
2002 C conf
Theoretical analysis of alternative splice forms using computational methods.
ECCB
Stéphanie Boué, Martin Vingron, Evgenia V. Kriventseva, Ina Koch
2002 — conf
Variance Stabilization and Robust Normalization for Microarray Gene Expression Data.
COMPSTAT
Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron
2002 A conf
Variance stabilization applied to microarray data calibration and to the quantification of differential expression.
ISMB
Wolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron
2001 J jnl
Bioinformatics needs to adopt statistical thinking - Editorial.
Bioinform.
Martin Vingron
2001 — conf
Identifying splits with clear separation: a new class discovery method for gene expression data.
ISMB (Supplement of Bioinformatics)
Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron
2001 J jnl
Limits of homology detection by pairwise sequence comparison.
Bioinform.
Rainer Spang, Martin Vingron
2000 J jnl
A polyhedral approach to sequence alignment problems.
Discret. Appl. Math.
John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron
2000 J jnl
Axeldb: a Xenopus laevis database focusing on gene expression.
Nucleic Acids Res.
Nicolas Pollet, Heiko A. Schmidt, Volker Gawantka, Martin Vingron, Christof Niehrs
2000 J jnl
Contig Selection in Physical Mapping.
J. Comput. Biol.
Steffen Heber, Jens Stoye, Marcus Frohme, Jörg D. Hoheisel, Martin Vingron
2000 B conf
Contig selection in physical mapping.
RECOMB
Steffen Heber, Jens Stoye, Jörg D. Hoheisel, Martin Vingron
2000 J jnl
Modeling Amino Acid Replacement.
J. Comput. Biol.
Tobias Müller, Martin Vingron
2000 J jnl
Processing and quality control of DNA array hybridization data.
Bioinform.
Tim Beißbarth, Kurt Fellenberg, Benedikt Brors, Rosa Arribas-Prat, Judith M. Boer, Nicole C. Hauser, Marcel Scheideler, Jörg D. Hoheisel, Günther Schütz, Annemarie Poustka, Martin Vingron
2000 J jnl
The SYSTERS protein sequence cluster set.
Nucleic Acids Res.
Antje Krause, Jens Stoye, Martin Vingron
2000 B conf
Tree fitting: an algebraic approach using profile distances.
RECOMB
Richard Desper, Martin Vingron
1999 — conf
A new method for modeling protein evolution.
German Conference on Bioinformatics
Tobias Müller, Rainer Spang, Martin Vingron
1999 — ed.
Mathematical Support for Molecular Biology, Proceedings from the DIMACS Special Year, 1998.
Mathematical Support for Molecular Biology
Martin Farach-Colton, Fred S. Roberts, Martin Vingron, Michael S. Waterman
1999 — conf
Phylogeny meets sequence search.
German Conference on Bioinformatics
Marc Rehmsmeier, Martin Vingron
1999 J jnl
WWW access to the SYSTERS protein sequence cluster set.
Bioinform.
Antje Krause, Pierre Nicodème, Erich Bornberg-Bauer, Marc Rehmsmeier, Martin Vingron
1998 J jnl
A Polyhedral Approach to RNA Sequence Structure Alignment.
J. Comput. Biol.
Hans-Peter Lenhof, Knut Reinert, Martin Vingron
1998 B conf
A polyhedral approach to RNA sequence structure alignment.
RECOMB
Hans-Peter Lenhof, Knut Reinert, Martin Vingron
1998 J jnl
A set-theoretic approach to database searching and clustering.
Bioinform.
Antje Krause, Martin Vingron
1998 — conf
Alignment and Phylogeny Construction for Biological Sequences.
IFIP Congress: Fundamentals - Foundations of Computer Science
Martin Vingron
1998 — conf
Automatic clustering of large sequence databases.
German Conference on Bioinformatics
Antje Krause, Pierre Nicodème, Marc Rehmsmeier, Martin Vingron
1998 J jnl
Duplication-Based Measures of Difference Between Gene and Species Trees.
J. Comput. Biol.
Oliver Eulenstein, Boris G. Mirkin, Martin Vingron
1998 J jnl
On the Equivalence of Two Tree Mapping Measures.
Discret. Appl. Math.
Oliver Eulenstein, Martin Vingron
1998 — conf
Sequence alignment and phylogeny construction.
Mathematical Support for Molecular Biology
Martin Vingron
1998 J jnl
Statistics of large-scale sequence searching.
Bioinform.
Rainer Spang, Martin Vingron
1998 J jnl
Towards detection of orthologues in sequence databases.
Bioinform.
Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork
1998 — conf
pfastDNAml: Using Parallel Computing for Maximum Likelihood Phylogenetic Analysis.
German Conference on Bioinformatics
Heiko A. Schmidt, Martin Vingron
1997 — conf
Statistics of large scale sequence searching.
German Conference on Bioinformatics
Rainer Spang, Martin Vingron
1997 J jnl
The Deferred Path Heuristic for the Generalized Tree Alignment Problem.
J. Comput. Biol.
Benno Schwikowski, Martin Vingron
1997 B conf
The deferred path heuristic for the generalized tree alignment problem.
RECOMB
Benno Schwikowski, Martin Vingron
1997 J jnl
Towards Integration of Multiple Alignment and Phylogenetic Tree Construction.
J. Comput. Biol.
Martin Vingron, Arndt von Haeseler
1997 — conf
Towards detection of sequence orthologs.
German Conference on Bioinformatics
Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork
1996 — conf
A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats.
German Conference on Bioinformatics - Selected Papers
Benno Schwikowski, Martin Vingron
1996 J jnl
Alignment Networks and Electrical Networks.
Discret. Appl. Math.
Martin Vingron, Michael S. Waterman
1996 — conf
Attacking Generalized tree Alignment by a Deferred Path Heuristic.
German Conference on Bioinformatics
Benno Schwikowski, Martin Vingron
1996 — conf
Comparison of annotating duplication, tree mapping, and copying as methods to compare gene trees with species trees.
Mathematical Hierarchies and Biology
Oliver Eulenstein, Boris G. Mirkin, Martin Vingron
1993 B conf
Multiple Sequence Comparison and n-Dimensional Image Reconstruction.
CPM
Martin Vingron, Pavel A. Pevzner
1989 J jnl
A fast and sensitive multiple sequence alignment algorithm.
Comput. Appl. Biosci.
Martin Vingron, P. Argos
1989 J jnl
A new interactive protein sequence alignment program and comparison of its results with widely used algorithms.
Comput. Appl. Biosci.
Renas Rechid, Martin Vingron, Patrick Argos