Martin Scharm - RankMe

14 papers Journal 11Unranked 2

Year	Rank	Type	Title / Venue / Authors
2020	J	`jnl`	GEMtractor: extracting views into genome-scale metabolic models. Bioinform. Martin Scharm, Olaf Wolkenhauer, Mahdi Jalili, Ali Salehzadeh-Yazdi
2019	J	`jnl`	Harmonizing semantic annotations for computational models in biology. Briefings Bioinform. Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath
2018	J	`jnl`	Evolution of computational models in BioModels Database and the Physiome Model Repository. BMC Syst. Biol. Martin Scharm, Tom Gebhardt, Vasundra Touré, Andrea Bagnacani, Ali Salehzadeh-Yazdi, Olaf Wolkenhauer, Dagmar Waltemath
2018	—	`—`	Improving reproducibility and reuse of modelling results in the life sciences Martin Scharm
2017	J	`jnl`	SED-ML web tools: generate, modify and export standard-compliant simulation studies. Bioinform. Frank T. Bergmann, David P. Nickerson, Dagmar Waltemath, Martin Scharm
2016	J	`jnl`	A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in F1000Research Martin Scharm, Dagmar Waltemath
2016	J	`jnl`	An algorithm to detect and communicate the differences in computational models describing biological systems. Bioinform. Martin Scharm, Olaf Wolkenhauer, Dagmar Waltemath
2016	J	`jnl`	COMODI: an ontology to characterise differences in versions of computational models in biology. J. Biomed. Semant. Martin Scharm, Dagmar Waltemath, Pedro Mendes, Olaf Wolkenhauer
2016	J	`jnl`	Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
2015	—	`conf`	Extracting reproducible simulation studies from model repositories using the combinearchive toolkit. BTW Workshops Martin Scharm, Dagmar Waltemath
2014	J	`jnl`	COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. BMC Bioinform. Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
2014	J	`jnl`	COMBINE archive: One File To Share Them All. CoRR Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
2014	—	`conf`	The CombineArchiveWeb Application - A Web-based Tool to Handle Files Associated with Modelling Results. SWAT4LS Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath
2013	J	`jnl`	Improving the reuse of computational models through version control. Bioinform. Dagmar Waltemath, Ron Henkel, Robert Hälke, Martin Scharm, Olaf Wolkenhauer