Martin Raden

11 papers C 1Journal 9Unranked 1
YearRankTypeTitle / Venue / Authors
2021 J jnl
<tt>CRISPRloci: </tt> comprehensive and accurate annotation of CRISPR-Cas systems.
Nucleic Acids Res.
Omer S. Alkhnbashi, Alexander Mitrofanov, Robson Bonidia, Martin Raden, Van Dinh Tran, Florian Eggenhofer, Shiraz A. Shah, Ekrem Öztürk, Victor Alexandre Padilha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho, Rolf Backofen
2020 J jnl
Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains.
Algorithms Mol. Biol.
Milad Miladi, Martin Raden, Sebastian Will, Rolf Backofen
2020 J jnl
MutaRNA: analysis and visualization of mutation-induced changes in RNA structure.
Nucleic Acids Res.
Milad Miladi, Martin Raden, Sven Diederichs, Rolf Backofen
2020 J jnl
The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment.
BMC Bioinform.
Martin Raden, Teresa Müller, Stefan Mautner, Rick Gelhausen, Rolf Backofen
2020 J jnl
pourRNA - a time- and memory-efficient approach for the guided exploration of RNA energy landscapes.
Bioinform.
Gregor Entzian, Martin Raden
2019 — conf
Constraint Maximal Inter-molecular Helix Lengths within RNA-RNA Interaction Prediction Improves Bacterial sRNA Target Prediction.
BIOINFORMATICS
Rick Gelhausen, Sebastian Will, Ivo L. Hofacker, Rolf Backofen, Martin Raden
2019 C conf
Fast and Accurate Structure Probability Estimation for Simultaneous Alignment and Folding of RNAs.
WABI
Milad Miladi, Martin Raden, Sebastian Will, Rolf Backofen
2019 J jnl
IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction.
J. Bioinform. Comput. Biol.
Rick Gelhausen, Sebastian Will, Ivo L. Hofacker, Rolf Backofen, Martin Raden
2019 J jnl
Integration of accessibility data from structure probing into RNA-RNA interaction prediction.
Bioinform.
Milad Miladi, Soheila Montaseri, Rolf Backofen, Martin Raden
2019 J jnl
ShaKer: RNA SHAPE prediction using graph kernel.
Bioinform.
Stefan Mautner, Soheila Montaseri, Milad Miladi, Martin Raden, Fabrizio Costa, Rolf Backofen
2018 J jnl
Freiburg RNA tools: a central online resource for RNA-focused research and teaching.
Nucleic Acids Res.
Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen