Martin Eisenacher

15 papers Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
ProtGraph: a tool for the quick and comprehensive exploration and exploitation of the peptide search space derived from protein sequence databases using graphs.
Briefings Bioinform.
Dominik Lux, Katrin Marcus-Alic, Martin Eisenacher, Julian Uszkoreit
2022 J jnl
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.
Nucleic Acids Res.
Yasset Pérez-Riverol, Jingwen Bai, Chakradhar Bandla, David García-Seisdedos, Suresh Hewapathirana, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Ananth Prakash, Anika Frericks-Zipper, Martin Eisenacher, Mathias Walzer, Shengbo Wang, Alvis Brazma, Juan Antonio Vizcaíno
2021 J jnl
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Briefings Bioinform.
Gerhard Mayer, Wolfgang Müller, Karin Schork, Julian Uszkoreit, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler, Hans A. Kestler, Daniel Wibberg, Alfred Pühler, Sven Twardziok, Jürgen Eils, Roland Eils, Steve Hoffmann, Martin Eisenacher, Michael Turewicz
2019 J jnl
A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects.
Briefings Bioinform.
Gerhard Mayer, Christian Quast, Janine Felden, Matthias Lange, Manuel Prinz, Alfred Pühler, Chris Lawerenz, Uwe Scholz, Frank Oliver Glöckner, Wolfgang Müller, Katrin Marcus, Martin Eisenacher
2019 J jnl
The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Nucleic Acids Res.
Yasset Pérez-Riverol, Attila Csordas, Jingwen Bai, Manuel Bernal Llinares, Suresh Hewapathirana, Deepti Jaiswal Kundu, Avinash Inuganti, Johannes Griss, Gerhard Mayer, Martin Eisenacher, Enrique Pérez, Julian Uszkoreit, Julianus Pfeuffer, Timo Sachsenberg, Sule Yilmaz, Shivani Tiwary, Jürgen Cox, Enrique Audain, Mathias Walzer, Andrew F. Jarnuczak, Tobias Ternent, Alvis Brazma, Juan Antonio Vizcaíno
2016 J jnl
PAA: an R/bioconductor package for biomarker discovery with protein microarrays.
Bioinform.
Michael Turewicz, Maike Ahrens, Caroline May, Katrin Marcus, Martin Eisenacher
2015 J jnl
Development of data representation standards by the human proteome organization proteomics standards initiative.
J. Am. Medical Informatics Assoc.
Eric W. Deutsch, Juan P. Albar, Pierre-Alain Binz, Martin Eisenacher, Andrew R. Jones, Gerhard Mayer, Gilbert S. Omenn, Sandra E. Orchard, Juan Antonio Vizcaíno, Henning Hermjakob
2015 J jnl
Invited presentations, junior research groups and research highlights at GCB 2015.
PeerJ Prepr.
Axel Mosig, Jörg Rahnenführer, Martin Eisenacher, Sven Rahmann
2015 J jnl
Poster abstracts of GCB 2015.
PeerJ Prepr.
Martin Eisenacher, Jörg Rahnenführer, Axel Mosig, Sven Rahmann
2013 — conf
Ontological analysis of controlled vocabularies used in PSI/MSI supported XML standards.
GI-Jahrestagung
Daniel Schober, Gerhard Mayer, Annick Moing, Martin Eisenacher, Steffen Neumann
2013 J jnl
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.
Database J. Biol. Databases Curation
Gerhard Mayer, Luisa Montecchi-Palazzi, David Ovelleiro, Andrew R. Jones, Pierre-Alain Binz, Eric W. Deutsch, Matthew Chambers, Marius Kallhardt, Fredrik Levander, James Shofstahl, Sandra E. Orchard, Juan Antonio Vizcaíno, Henning Hermjakob, Christian Stephan, Helmut E. Meyer, Martin Eisenacher
2012 — ch.
Important Issues in Planning a Proteomics Experiment: Statistical Considerations of Quantitative Proteomic Data.
Quantitative Methods in Proteomics
Katharina Podwojski, Christian Stephan, Martin Eisenacher
2012 — ch.
Search and Decoy: The Automatic Identification of Mass Spectra.
Quantitative Methods in Proteomics
Martin Eisenacher, Michael Kohl, Michael Turewicz, Markus-Hermann Koch, Julian Uszkoreit, Christian Stephan
2010 — ch.
Proteomics Data Collection (ProDaC): Publishing and Collecting Proteomics Data Sets in Public Repositories Using Standard Formats.
Proteome Bioinformatics
Christian Stephan, Martin Eisenacher, Michael Kohl, Helmut E. Meyer
2006 J jnl
Mass Analysis Peptide Sequence Prediction (MAPSP).
Bioinform.
Martin Eisenacher, Jürgen de Braaf, Simone König