Martin C. Herbordt

170 papers A* 4A 10B 21C 3Misc 25Journal 43Unranked 63

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	ACiS: Complex Processing in the Switch Fabric. CoRR Pouya Haghi, Anqi Guo, Tong Geng, Anthony Skjellum, Martin C. Herbordt
2025	—	`conf`	Accelerating Multi-Party Computation Using Heterogeneous Systems. HPEC Xiteng Yao, Shining Yang, Mayank Varia, Martin C. Herbordt
2025	J	`jnl`	AnnotationGym: A Generic Framework for Automatic Source Code Annotation. IEEE Access Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Ulrich Drepper, Martin C. Herbordt
2025	—	`conf`	Load Imbalance in HPC Applications: Improved Profiling and New Ways to Use Wasted Cycles. HPEC Shining Yang, Xiteng Yao, Grace Nansamba, Amr Akmal Abouelmagd, Anthony Skjellum, Martin C. Herbordt
2025	A	`conf`	SmartNIC-GPU-CPU Heterogeneous System for Large Machine Learning Model with Software-Hardware Codesign. ICS Anqi Guo, Yuchen Hao, Xiteng Yao, Shining Yang, Jianyu Huang, Tony Tong Geng, Martin C. Herbordt
2025	—	`conf`	Towards -OmL: A Deep Learning Based Approach for Outperforming Compiler Defaults. HPEC Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Ulrich Drepper, Martin C. Herbordt
2025	J	`jnl`	VeBPF Many-Core Architecture for Network Functions in FPGA-based SmartNICs and IoT. CoRR Zaid Tahir, Ahmed Sanaullah, Sahan Bandara, Ulrich Drepper, Martin C. Herbordt
2024	—	`conf`	A Graph-Based Algorithm for Optimizing GCC Compiler Flag Settings. HPEC Reza Sajjadinasab, Sanjay Arora, Ulrich Drepper, Ahmed Sanaullah, Martin C. Herbordt
2024	—	`conf`	A Neural Network Based GCC Cost Model for Faster Compiler Tuning. HPEC Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Ulrich Drepper, Martin C. Herbordt
2024	—	`conf`	AutoAnnotate: Reinforcement Learning based Code Annotation for High Level Synthesis. ISQED Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Ulrich Drepper, Martin C. Herbordt
2024	—	`conf`	Cycle-Stealing in Load-Imbalanced HPC Applications. HPEC Po Hao Chen, Akshaya Bali, Shining Yang, Pouya Haghi, Carlton Knox, Benjamin Li, Amr Akmal Abouelmagd, Anthony Skjellum, Martin C. Herbordt
2024	J	`jnl`	FPGA-Accelerated Range-Limited Molecular Dynamics. IEEE Trans. Computers Chunshu Wu, Chen Yang, Sahan Bandara, Tong Geng, Anqi Guo, Pouya Haghi, Ang Li, Martin C. Herbordt
2024	—	`conf`	Fully Transparent Client-Side Caching for Key-Value Store Applications Using FPGAs. HPEC Sahan Bandara, Noah Cherry, Martin C. Herbordt
2024	—	`conf`	Further Optimizations and Analysis of Smith-Waterman with Vector Extensions. IPDPS (Workshops) Reza Sajjadinasab, Hamed Rastaghi, Hafsah Shahzad, Sanjay Arora, Ulrich Drepper, Martin C. Herbordt
2024	J	`jnl`	Long-Range MD Electrostatics Force Computation on FPGAs. IEEE Trans. Parallel Distributed Syst. Sahan Bandara, Anthony Ducimo, Chunshu Wu, Martin C. Herbordt
2024	—	`conf`	Multi-Core Multi-Rule VeBPF Firewall for Secure FPGA IoT Device Deployments. IPDPS (Workshops) Zaid Tahir, Sahan Bandara, Martin C. Herbordt
2024	—	`conf`	Performance Evaluation of VirtIO Device Drivers for Host-FPGA PCIe Communication. IPDPS (Workshops) Sahan Bandara, Ahmed Sanaullah, Zaid Tahir, Ulrich Drepper, Martin C. Herbordt
2024	A	`conf`	SmartFuse: Reconfigurable Smart Switches to Accelerate Fused Collectives in HPC Applications. ICS Pouya Haghi, Cheng Tan, Anqi Guo, Chunshu Wu, Dongfang Liu, Ang Li, Anthony Skjellum, Tong Geng, Martin C. Herbordt
2024	—	`conf`	VeBPF Many-Core Architecture for Network Functions in FPGA-based SmartNICs and IoT. HPEC Zaid Tahir, Ahmed Sanaullah, Sahan Bandara, Ulrich Drepper, Martin C. Herbordt
2023	J	`jnl`	A Survey of Potential MPI Complex Collectives: Large-Scale Mining and Analysis of HPC Applications. CoRR Pouya Haghi, Ryan J. Marshall, Po Hao Chen, Anthony Skjellum, Martin C. Herbordt
2023	A	`conf`	FASDA: An FPGA-Aided, Scalable and Distributed Accelerator for Range-Limited Molecular Dynamics. SC Chunshu Wu, Tong Geng, Anqi Guo, Sahan Bandara, Pouya Haghi, Chuan Liu, Ang Li, Martin C. Herbordt
2023	A	`conf`	FLASH: FPGA-Accelerated Smart Switches with GCN Case Study. ICS Pouya Haghi, William Krska, Cheng Tan, Tong Geng, Po Hao Chen, Connor Greenwood, Anqi Guo, Thomas M. Hines, Chunshu Wu, Ang Li, Anthony Skjellum, Martin C. Herbordt
2023	—	`conf`	Improved Models for Policy-Agent Learning of Compiler Directives in HLS. HPEC Robert Munafo, Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Ulrich Drepper, Martin C. Herbordt
2023	J	`jnl`	Introduction to the Special Section on FCCM 2022. ACM Trans. Reconfigurable Technol. Syst. Jing Li, Martin C. Herbordt
2023	A	`conf`	Software-Hardware Co-design of Heterogeneous SmartNIC System for Recommendation Models Inference and Training. ICS Anqi Guo, Yuchen Hao, Chunshu Wu, Pouya Haghi, Zhenyu Pan, Min Si, Dingwen Tao, Ang Li, Martin C. Herbordt, Tong Geng
2022	B	`conf`	A Framework for Neural Network Inference on FPGA-Centric SmartNICs. FPL Anqi Guo, Tong Geng, Yongan Zhang, Pouya Haghi, Chunshu Wu, Cheng Tan, Yingyan Lin, Ang Li, Martin C. Herbordt
2022	Misc	`conf`	COPA Use Case: Distributed Secure Joint Computation. FCCM Rushi Patel, Pouya Haghi, Shweta Jain, Andriy Kot, Venkata Krishnan, Mayank Varia, Martin C. Herbordt
2022	—	`conf`	Distributed Hardware Accelerated Secure Joint Computation on the COPA Framework. HPEC Rushi Patel, Pouya Haghi, Shweta Jain, Andriy Kot, Venkata Krishnan, Mayank Varia, Martin C. Herbordt
2022	J	`jnl`	Distributed Hardware Accelerated Secure Joint Computation on the COPA Framework. CoRR Rushi Patel, Pouya Haghi, Shweta Jain, Andriy Kot, Venkata Krishnan, Mayank Varia, Martin C. Herbordt
2022	—	`conf`	Enabling VirtIO Driver Support on FPGAs. H2RC@SC Sahan Bandara, Ahmed Sanaullah, Zaid Tahir, Ulrich Drepper, Martin C. Herbordt
2022	Misc	`conf`	FCsN: A FPGA-Centric SmartNIC Framework for Neural Networks. FCCM Anqi Guo, Tong Geng, Yongan Zhang, Pouya Haghi, Chunshu Wu, Cheng Tan, Yingyan Lin, Ang Li, Martin C. Herbordt
2022	B	`conf`	H-GCN: A Graph Convolutional Network Accelerator on Versal ACAP Architecture. FPL Chengming Zhang, Tong Geng, Anqi Guo, Jiannan Tian, Martin C. Herbordt, Ang Li, Dingwen Tao
2022	J	`jnl`	H-GCN: A Graph Convolutional Network Accelerator on Versal ACAP Architecture. CoRR Chengming Zhang, Tong Geng, Anqi Guo, Jiannan Tian, Martin C. Herbordt, Ang Li, Dingwen Tao
2022	J	`jnl`	I-GCN: A Graph Convolutional Network Accelerator with Runtime Locality Enhancement through Islandization. CoRR Tong Geng, Chunshu Wu, Yongan Zhang, Cheng Tan, Chenhao Xie, Haoran You, Martin C. Herbordt, Yingyan Lin, Ang Li
2022	B	`conf`	Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs. FPL Chunshu Wu, Sahan Bandara, Tong Geng, Anqi Guo, Pouya Haghi, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2022	J	`jnl`	Reconfigurable switches for high performance and flexible MPI collectives. Concurr. Comput. Pract. Exp. Pouya Haghi, Anqi Guo, Qingqing Xiong, Chen Yang, Tong Geng, Justin T. Broaddus, Ryan J. Marshall, Derek Schafer, Anthony Skjellum, Martin C. Herbordt
2022	—	`conf`	Reinforcement Learning Strategies for Compiler Optimization in High level Synthesis. LLVM-HPC@SC Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Robert Munafo, Xiteng Yao, Ulrich Drepper, Martin C. Herbordt
2022	J	`jnl`	The Future of FPGA Acceleration in Datacenters and the Cloud. ACM Trans. Reconfigurable Technol. Syst. Christophe Bobda, Joel Mandebi Mbongue, Paul Chow, Mohammad Ewais, Naif Tarafdar, Juan Camilo Vega, Ken Eguro, Dirk Koch, Suranga Handagala, Miriam Leeser, Martin C. Herbordt, Hafsah Shahzad, H. Peter Hofstee, Burkhard Ringlein, Jakub Szefer, Ahmed Sanaullah, Russell Tessier
2022	—	`conf`	The Viability of Using Online Prediction to Perform Extra Work while Executing BSP Applications. HPEC Po Hao Chen, Pouya Haghi, Jae Yoon Chung, Tong Geng, Richard West, Anthony Skjellum, Martin C. Herbordt
2021	—	`conf`	A Survey: Handling Irregularities in Neural Network Acceleration with FPGAs. HPEC Tong Geng, Chunshu Wu, Cheng Tan, Chenhao Xie, Anqi Guo, Pouya Haghi, Sarah Yuan He, Jiajia Li, Martin C. Herbordt, Ang Li
2021	A*	`conf`	I-GCN: A Graph Convolutional Network Accelerator with Runtime Locality Enhancement through Islandization. MICRO Tong Geng, Chunshu Wu, Yongan Zhang, Cheng Tan, Chenhao Xie, Haoran You, Martin C. Herbordt, Yingyan Lin, Ang Li
2021	J	`jnl`	O3BNN-R: An Out-of-Order Architecture for High-Performance and Regularized BNN Inference. IEEE Trans. Parallel Distributed Syst. Tong Geng, Ang Li, Tianqi Wang, Chunshu Wu, Yanfei Li, Runbin Shi, Wei Wu, Martin C. Herbordt
2021	Misc	`conf`	Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster. FCCM Lawrence C. Stewart, Carlo Pascoe, Emery Davis, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva
2021	—	`conf`	Survey and Future Trends for FPGA Cloud Architectures. HPEC Hafsah Shahzad, Ahmed Sanaullah, Martin C. Herbordt
2021	—	`conf`	System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations. HPEC Chunshu Wu, Sahan Bandara, Tong Geng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2021	—	`conf`	The Open Cloud Testbed (OCT): A Platform for Research into new Cloud Technologies. CloudNet Michael Zink, David Irwin, Emmanuel Cecchet, Hakan Saplakoglu, Orran Krieger, Martin C. Herbordt, Michael Daitzman, Peter Desnoyers, Miriam Leeser, Suranga Handagala
2021	Misc	`conf`	Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors. FCCM Chunshu Wu, Tong Geng, Sahan Bandara, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2021	—	`conf`	Workload Imbalance in HPC Applications: Effect on Performance of In-Network Processing. HPEC Pouya Haghi, Anqi Guo, Tong Geng, Anthony Skjellum, Martin C. Herbordt
2020	—	`conf`	A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics. HPEC Chunshu Wu, Tong Geng, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2020	—	`conf`	A Reconfigurable Compute-in-the-Network FPGA Assistant for High-Level Collective Support with Distributed Matrix Multiply Case Study. FPT Pouya Haghi, Anqi Guo, Tong Geng, Justin T. Broaddus, Derek Schafer, Anthony Skjellum, Martin C. Herbordt
2020	A*	`conf`	AWB-GCN: A Graph Convolutional Network Accelerator with Runtime Workload Rebalancing. MICRO Tong Geng, Ang Li, Runbin Shi, Chunshu Wu, Tianqi Wang, Yanfei Li, Pouya Haghi, Antonino Tumeo, Shuai Che, Steven K. Reinhardt, Martin C. Herbordt
2020	Misc	`conf`	Accelerating MPI Collectives with FPGAs in the Network and Novel Communicator Support. FCCM Qingqing Xiong, Chen Yang, Pouya Haghi, Anthony Skjellum, Martin C. Herbordt
2020	J	`jnl`	An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs. CoRR Lawrence C. Stewart, Carlo Pascoe, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva
2020	—	`conf`	Arithmetic and Boolean Secret Sharing MPC on FPGAs in the Data Center. HPEC Rushi Patel, Pierre-Francois Wolfe, Robert Munafo, Mayank Varia, Martin C. Herbordt
2020	—	`conf`	CQNN: a CGRA-based QNN Framework. HPEC Tong Geng, Chunshu Wu, Cheng Tan, Bo Fang, Ang Li, Martin C. Herbordt
2020	J	`jnl`	CSB-RNN: A Faster-than-Realtime RNN Acceleration Framework with Compressed Structured Blocks. CoRR Runbin Shi, Peiyan Dong, Tong Geng, Yuhao Ding, Xiaolong Ma, Hayden Kwok-Hay So, Martin C. Herbordt, Ang Li, Yanzhi Wang
2020	A	`conf`	CSB-RNN: a faster-than-realtime RNN acceleration framework with compressed structured blocks. ICS Runbin Shi, Peiyan Dong, Tong Geng, Yuhao Ding, Xiaolong Ma, Hayden Kwok-Hay So, Martin C. Herbordt, Ang Li, Yanzhi Wang
2020	—	`conf`	Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs. HPEC Carlo Pascoe, Lawrence C. Stewart, Brian W. Sherman, Vipin Sachdeva, Martin C. Herbordt
2020	Misc	`conf`	FP-AMG: FPGA-Based Acceleration Framework for Algebraic Multigrid Solvers. FCCM Pouya Haghi, Tong Geng, Anqi Guo, Tianqi Wang, Martin C. Herbordt
2020	J	`jnl`	FPDeep: Scalable Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters. IEEE Trans. Computers Tianqi Wang, Tong Geng, Ang Li, Xi Jin, Martin C. Herbordt
2020	—	`conf`	FPGAs in the Network and Novel Communicator Support Accelerate MPI Collectives. HPEC Pouya Haghi, Anqi Guo, Qingqing Xiong, Rushi Patel, Chen Yang, Tong Geng, Justin T. Broaddus, Ryan J. Marshall, Anthony Skjellum, Martin C. Herbordt
2020	B	`conf`	Secret Sharing MPC on FPGAs in the Datacenter. FPL Pierre-Francois Wolfe, Rushi Patel, Robert Munafo, Mayank Varia, Martin C. Herbordt
2020	J	`jnl`	Secret Sharing MPC on FPGAs in the Datacenter. CoRR Pierre-Francois Wolfe, Rushi Patel, Robert Munafo, Mayank Varia, Martin C. Herbordt
2019	J	`jnl`	A Scalable Framework for Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters with Weight and Workload Balancing. CoRR Tong Geng, Tianqi Wang, Ang Li, Xi Jin, Martin C. Herbordt
2019	—	`conf`	Accelerating AP3M-Based Computational Astrophysics Simulations with Reconfigurable Clusters. ASAP Tianqi Wang, Tong Geng, Xi Jin, Martin C. Herbordt
2019	A	`conf`	BSTC: a novel binarized-soft-tensor-core design for accelerating bit-based approximated neural nets. SC Ang Li, Tong Geng, Tianqi Wang, Martin C. Herbordt, Shuaiwen Leon Song, Kevin J. Barker
2019	Misc	`conf`	FP-AMR: A Reconfigurable Fabric Framework for Adaptive Mesh Refinement Applications. FCCM Tianqi Wang, Tong Geng, Xi Jin, Martin C. Herbordt
2019	J	`jnl`	Fully Integrated On-FPGA Molecular Dynamics Simulations. CoRR Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2019	A	`conf`	Fully integrated FPGA molecular dynamics simulations. SC Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Chunshu Wu, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2019	Misc	`conf`	GhostSZ: A Transparent FPGA-Accelerated Lossy Compression Framework. FCCM Qingqing Xiong, Rushi Patel, Chen Yang, Tong Geng, Anthony Skjellum, Martin C. Herbordt
2019	—	`conf`	LP-BNN: Ultra-low-Latency BNN Inference with Layer Parallelism. ASAP Tong Geng, Tianqi Wang, Chunshu Wu, Chen Yang, Shuaiwen Leon Song, Ang Li, Martin C. Herbordt
2019	—	`conf`	Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs. ASAP Chen Yang, Tong Geng, Tianqi Wang, Charles Lin, Jiayi Sheng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2019	A	`conf`	O3BNN: an out-of-order architecture for high-performance binarized neural network inference with fine-grained pruning. ICS Tong Geng, Tianqi Wang, Chunshu Wu, Chen Yang, Wei Wu, Ang Li, Martin C. Herbordt
2019	J	`jnl`	UWB-GCN: Hardware Acceleration of Graph-Convolution-Network through Runtime Workload Rebalancing. CoRR Tong Geng, Ang Li, Tianqi Wang, Chunshu Wu, Yanfei Li, Antonino Tumeo, Martin C. Herbordt
2018	B	`conf`	A Framework for Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters with Work and Weight Load Balancing. FPL Tong Geng, Tianqi Wang, Ahmed Sanaullah, Chen Yang, Rushi Patel, Martin C. Herbordt
2018	B	`conf`	Accelerating MPI Message Matching through FPGA Offload. FPL Qingqing Xiong, Anthony Skjellum, Martin C. Herbordt
2018	—	`conf`	An Access-Pattern-Aware On-Chip Vector Memory System with Automatic Loading for SIMD Architectures. HPEC Tong Geng, Erkan Diken, Tianqi Wang, Lech Józwiak, Martin C. Herbordt
2018	—	`conf`	An Empirically Guided Optimization Framework for FPGA OpenCL. FPT Ahmed Sanaullah, Rushi Patel, Martin C. Herbordt
2018	—	`conf`	Application Aware Tuning of Reconfigurable Multi-Layer Perceptron Architectures. HPEC Ahmed Sanaullah, Chen Yang, Yuri Alexeev, Kazutomo Yoshii, Martin C. Herbordt
2018	—	`conf`	Benchmarking Heterogeneous HPC Systems Including Reconfigurable Fabrics: Community Aspirations for Ideal Comparisons. HPEC Peter Jamieson, Ahmed Sanaullah, Martin C. Herbordt
2018	Misc	`conf`	FPDeep: Acceleration and Load Balancing of CNN Training on FPGA Clusters. FCCM Tong Geng, Tianqi Wang, Ahmed Sanaullah, Chen Yang, Rui Xu, Rushi Patel, Martin C. Herbordt
2018	—	`conf`	FPGA HPC using OpenCL: Case Study in 3D FFT. HEART Ahmed Sanaullah, Martin C. Herbordt
2018	B	`conf`	High Performance Communication on Reconfigurable Clusters. FPL Jiayi Sheng, Chen Yang, Martin C. Herbordt
2018	Misc	`conf`	High Performance Dynamic Communication on Reconfigurable Clusters. FCCM Jiayi Sheng, Chen Yang, Tianqi Wang, Martin C. Herbordt
2018	C	`conf`	MPI Derived Datatypes: Performance and Portability Issues. EuroMPI Qingqing Xiong, Purushotham V. Bangalore, Anthony Skjellum, Martin C. Herbordt
2018	J	`jnl`	Real-time data analysis for medical diagnosis using FPGA-accelerated neural networks. BMC Bioinform. Ahmed Sanaullah, Chen Yang, Yuri Alexeev, Kazutomo Yoshii, Martin C. Herbordt
2018	—	`conf`	Soft-Core. Multiple-Lane, FPGA-based ADCs for a Liquid Helium Environment. HPEC Zikun Xiang, Tianqi Wang, Tong Geng, Tian Xiang, Xi Jin, Martin C. Herbordt
2018	—	`conf`	Tangram: Colocating HPC Applications with Oversubscription. HPEC Qingqing Xiong, Emre Ates, Martin C. Herbordt, Ayse K. Coskun
2018	—	`conf`	Unlocking Performance-Programmability by Penetrating the Intel FPGA OpenCL Toolflow. HPEC Ahmed Sanaullah, Martin C. Herbordt
2017	—	`conf`	An FPGA-based data acquisition system for directional dark matter detection. HPEC Chen Yang, Jiayi Sheng, Aravind Sridhar, Martin C. Herbordt, Catherine Nicoloff, James B. R. Battat
2017	Misc	`conf`	Bonded Force Computations on FPGAs. FCCM Qingqing Xiong, Martin C. Herbordt
2017	B	`conf`	HPC on FPGA clouds: 3D FFTs and implications for molecular dynamics. FPL Jiayi Sheng, Chen Yang, Ahmed Sanaullah, Michael Papamichael, Adrian M. Caulfield, Martin C. Herbordt
2017	—	`conf`	OpenCL for HPC with FPGAs: Case study in molecular electrostatics. HPEC Chen Yang, Jiayi Sheng, Rushi Patel, Ahmed Sanaullah, Vipin Sachdeva, Martin C. Herbordt
2016	—	`conf`	A hardware design for in-brain neural spike sorting. HPEC Yinan Liu, Jiayi Sheng, Martin C. Herbordt
2016	Misc	`conf`	Application-Aware Collective Communication (Extended Abstract). FCCM Jiayi Sheng, Qingqing Xiong, Chen Yang, Martin C. Herbordt
2016	J	`jnl`	Collective Communication on FPGA Clusters with Static Scheduling. SIGARCH Comput. Archit. News Jiayi Sheng, Qingqing Xiong, Chen Yang, Martin C. Herbordt
2016	J	`jnl`	Communication and cooling aware job allocation in data centers for communication-intensive workloads. J. Parallel Distributed Comput. Jie Meng, Eduard Llamosí, Fulya Kaplan, Chulian Zhang, Jiayi Sheng, Martin C. Herbordt, Gunar Schirner, Ayse K. Coskun
2016	Misc	`conf`	FPGA-Accelerated Particle-Grid Mapping. FCCM Ahmed Sanaullah, Arash Khoshparvar, Martin C. Herbordt
2016	—	`conf`	GPU-accelerated charge mapping. HPEC Ahmed Sanaullah, Saiful A. Mojumder, Kathleen M. Lewis, Martin C. Herbordt
2016	—	`conf`	Novo-G#: Large-scale reconfigurable computing with direct and programmable interconnects. HPEC Alan D. George, Martin C. Herbordt, Herman Lam, Abhijeet G. Lawande, Jiayi Sheng, Chen Yang
2015	—	`conf`	Hardware-efficient compressed sensing encoder designs for WBSNs. HPEC Jiayi Sheng, Chen Yang, Martin C. Herbordt
2015	J	`jnl`	NCBI BLASTP on High-Performance Reconfigurable Computing Systems. ACM Trans. Reconfigurable Technol. Syst. Atabak Mahram, Martin C. Herbordt
2014	Misc	`conf`	3D FFTs on a Single FPGA. FCCM Benjamin Humphries, Hansen Zhang, Jiayi Sheng, Raphael Landaverde, Martin C. Herbordt
2014	—	`conf`	An investigation of Unified Memory Access performance in CUDA. HPEC Raphael Landaverde, Tiansheng Zhang, Ayse K. Coskun, Martin C. Herbordt
2014	—	`conf`	Design of 3D FFTs with FPGA clusters. HPEC Jiayi Sheng, Ben Humphries, Hansen Zhang, Martin C. Herbordt
2014	—	`conf`	GPU optimizations for a production molecular docking code. HPEC Raphael Landaverde, Martin C. Herbordt
2014	—	`ch.`	Increasing Parallelism and Reducing Thread Contentions in Mapping Localized N-Body Simulations to GPUs. Numerical Computations with GPUs Bharat Sukhwani, Martin C. Herbordt
2013	—	`conf`	3D FFT for FPGAs. HPEC Ben Humphries, Martin C. Herbordt
2013	Misc	`conf`	Architecture/algorithm codesign of molecular dynamics processors. ACSSC Martin C. Herbordt
2013	J	`jnl`	NCBI BLASTP on the convey HC1-EX. SIGARCH Comput. Archit. News Atabak Mahram, Martin C. Herbordt
2012	B	`conf`	CAAD BLASTP 2.0: NCBI BLASTP accelerated with pipelined filters. FPL Atabak Mahram, Martin C. Herbordt
2012	Misc	`conf`	FMSA: FPGA-Accelerated ClustalW-Based Multiple Sequence Alignment through Pipelined Prefiltering. FCCM Atabak Mahram, Martin C. Herbordt
2011	Misc	`conf`	Efficient Calculation of Pairwise Nonbonded Forces. FCCM Matt Chiu, Md. Ashfaquzzaman Khan, Martin C. Herbordt
2011	J	`jnl`	Parallel discrete molecular dynamics simulation with speculation and in-order commitment. J. Comput. Phys. Md. Ashfaquzzaman Khan, Martin C. Herbordt
2011	—	`conf`	Software optimization for performance, energy, and thermal distribution: Initial case studies. IGCC Md. Ashfaquzzaman Khan, Can Hankendi, Ayse Kivilcim Coskun, Martin C. Herbordt
2010	C	`conf`	CAAD BLASTn: Accelerated NCBI BLASTn with FPGA prefiltering. ISCAS Jin H. Park, Yunfei Qiu, Martin C. Herbordt
2010	J	`jnl`	FPGA acceleration of rigid-molecule docking codes. IET Comput. Digit. Tech. Bharat Sukhwani, Martin C. Herbordt
2010	A	`conf`	Fast and accurate NCBI BLASTP: acceleration with multiphase FPGA-based prefiltering. ICS Atabak Mahram, Martin C. Herbordt
2010	—	`conf`	Fast binding site mapping using GPUs and CUDA. IPDPS Workshops Bharat Sukhwani, Martin C. Herbordt
2010	J	`jnl`	Molecular Dynamics Simulations on High-Performance Reconfigurable Computing Systems. ACM Trans. Reconfigurable Technol. Syst. Matt Chiu, Martin C. Herbordt
2010	—	`conf`	Towards production FPGA-accelerated molecular dynamics: Progress and challenges. HPRCTA@SC Matt Chiu, Martin C. Herbordt
2009	Misc	`conf`	CAAD BLASTP: NCBI BLASTP Accelerated with FPGA-Based Accelerated Pre-Filtering. FCCM Jin H. Park, Yunfei Qiu, Martin C. Herbordt
2009	B	`conf`	Efficient particle-pair filtering for acceleration of molecular dynamics simulation. FPL Matt Chiu, Martin C. Herbordt
2009	J	`jnl`	Elements of High-Performance Reconfigurable Computing. Adv. Comput. Tom Van Court, Martin C. Herbordt
2009	—	`conf`	FPGA-based acceleration of CHARMM-potential minimization. HPRCTA@SC Bharat Sukhwani, Martin C. Herbordt
2009	—	`conf`	GPU acceleration of a production molecular docking code. GPGPU Bharat Sukhwani, Martin C. Herbordt
2009	—	`conf`	Parallel Discrete Event Simulation of Molecular Dynamics Through Event-Based Decomposition. ASAP Martin C. Herbordt, Md. Ashfaquzzaman Khan, Tony Dean
2008	B	`conf`	Acceleration of a production rigid molecule docking code. FPL Bharat Sukhwani, Martin C. Herbordt
2008	Misc	`conf`	An Efficient O(1) Priority Queue for Large FPGA-Based Discrete Event Simulations of Molecular Dynamics. FCCM Martin C. Herbordt, Francois Kosie, Josh Model
2008	J	`jnl`	Computing Models for FPGA-Based Accelerators. Comput. Sci. Eng. Martin C. Herbordt, Yongfeng Gu, Tom Van Court, Josh Model, Bharat Sukhwani, Matt Chiu
2008	J	`jnl`	Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations. Parallel Comput. Yongfeng Gu, Tom Van Court, Martin C. Herbordt
2008	—	`conf`	Performance potential of molecular dynamics simulations on high performance reconfigurable computing systems. HPRCTA@SC Matt Chiu, Martin C. Herbordt, Martin Langhammer
2007	J	`jnl`	Achieving High Performance with FPGA-Based Computing. Computer Martin C. Herbordt, Tom Van Court, Yongfeng Gu, Bharat Sukhwani, Al Conti, Josh Model, Douglas DiSabello
2007	B	`conf`	Discrete Event Simulation of Molecular Dynamics with Configurable Logic. FPL Josh Model, Martin C. Herbordt
2007	Misc	`conf`	FPGA-Based Multigrid Computation for Molecular Dynamics Simulations. FCCM Yongfeng Gu, Martin C. Herbordt
2007	J	`jnl`	Families of FPGA-based accelerators for approximate string matching. Microprocess. Microsystems Tom Van Court, Martin C. Herbordt
2007	J	`jnl`	Single pass streaming BLAST on FPGAs. Parallel Comput. Martin C. Herbordt, Josh Model, Bharat Sukhwani, Yongfeng Gu, Tom Van Court
2006	Misc	`conf`	Application-Specific Memory Interleaving Enables High Performance in FPGA-based Grid Computations. FCCM Tom Van Court, Martin C. Herbordt
2006	B	`conf`	Application-Specific Memory Interleaving for FPGA-Based Grid Computations: A General Design Technique. FPL Tom Van Court, Martin C. Herbordt
2006	B	`conf`	Improved Interpolation and System Integration for FPGA-Based Molecular Dynamics Simulations. FPL Yongfeng Gu, Tom Van Court, Martin C. Herbordt
2006	Misc	`conf`	Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report. FCCM Yongfeng Gu, Tom Van Court, Martin C. Herbordt
2006	J	`jnl`	Rigid Molecule Docking: FPGA Reconfiguration for Alternative Force Laws. EURASIP J. Adv. Signal Process. Tom Van Court, Yongfeng Gu, Vikas Mundada, Martin C. Herbordt
2006	Misc	`conf`	Single Pass, BLAST-Like, Approximate String Matching on FPGAs. FCCM Martin C. Herbordt, Josh Model, Yongfeng Gu, Bharat Sukhwani, Tom Van Court
2006	B	`conf`	Sizing of Processing Arrays for FPGA-Based Computation. FPL Tom Van Court, Martin C. Herbordt
2005	B	`conf`	Accelerating Molecular Dynamics Simulations With Configurable Circuits. FPL Yongfeng Gu, Tom Van Court, Martin C. Herbordt
2005	B	`conf`	LAMP: A Tool Suite for Families of FPGA-Based Application Accelerators. FPL Tom Van Court, Martin C. Herbordt
2005	Misc	`conf`	Preliminary Report: FPGA Acceleration of Molecular Dynamics Computations. FCCM Yongfeng Gu, Tom Van Court, Douglas DiSabello, Martin C. Herbordt
2005	—	`conf`	Three-Dimensional Template Correlation: Object Recognition in 3D Voxel Data. CAMP Tom Van Court, Yongfeng Gu, Martin C. Herbordt
2004	J	`jnl`	Array control for high-performance SIMD systems. J. Parallel Distributed Comput. Martin C. Herbordt, Jade Cravy, Honghai Zhang
2004	J	`jnl`	Case study of a functional genomics application for an FPGA-based coprocessor. Microprocess. Microsystems Tom Van Court, Martin C. Herbordt, Richard J. Barton
2004	Misc	`conf`	FPGA Acceleration of Rigid Molecule Interactions. FCCM Tom Van Court, Yongfeng Gu, Martin C. Herbordt
2004	B	`conf`	FPGA Acceleration of Rigid Molecule Interactions. FPL Tom Van Court, Yongfeng Gu, Martin C. Herbordt
2004	—	`conf`	Families of FPGA-Based Algorithms for Approximate String Matching. ASAP Tom Van Court, Martin C. Herbordt
2004	B	`conf`	Processing Repetitive Sequence Structures with Mismatches at Streaming Rate. FPL Albert A. Conti, Tom Van Court, Martin C. Herbordt
2003	B	`conf`	Case Study of a Functional Genomics Application. FPL Tom Van Court, Martin C. Herbordt, Richard J. Barton
2000	J	`jnl`	A System for Evaluating Performance and Cost of SIMD Array Designs. J. Parallel Distributed Comput. Martin C. Herbordt, Jade Cravy, Renoy Sam, Owais Kidwai, Calvin Lin
2000	—	`conf`	An Array Control Unit for High Performance SIMD Arrays. CAMP Martin C. Herbordt, Jade Cravy, Honghai Zhang, Calvin Lin, Hong Rao
2000	—	`conf`	Control for High-Speed PE Arrays. ASAP Martin C. Herbordt, Honghai Zhang, Calvin Lin, Hong Rao, Jade Cravy
1999	J	`jnl`	Using Emulations to Enhance the Performance of Parallel Architectures. IEEE Trans. Parallel Distributed Syst. Bojana Obrenic, Martin C. Herbordt, Arnold L. Rosenberg, Charles C. Weems
1997	A*	`conf`	Preprototyping SIMD Coprocessors Using Virtual Machine Emulation and Trace Compilation. SIGMETRICS Martin C. Herbordt, Owais Kidwai, Charles C. Weems
1995	C	`conf`	An empirical study of datapath, memory hierarchy, and network in SIMD array architectures. ICCD Martin C. Herbordt, Charles C. Weems
1995	J	`jnl`	Enpassant: An Environment for Evaluating Massively Parallel Array Architectures for Spatially Mapped Applications. Int. J. Pattern Recognit. Artif. Intell. Martin C. Herbordt, Charles C. Weems
1995	—	`conf`	Experimental Analysis of Some SIMD Array Memory Hierarchies. ICPP (1) Martin C. Herbordt, Charles C. Weems
1994	J	`jnl`	Practical Algorithms for Online Routing on Fixed and Reconfigurable Meshes. J. Parallel Distributed Comput. Martin C. Herbordt, James C. Corbett, Charles C. Weems, John Spalding
1992	J	`jnl`	Nonuniform region processing on SIMD arrays using the coterie network. Mach. Vis. Appl. Martin C. Herbordt, Charles C. Weems, Michael J. Scudder
1991	A*	`conf`	A computational framework and SIMD algorithms for low-level support of intermediate level vision processing. CVPR Martin C. Herbordt, Charles C. Weems, Michael J. Scudder
1991	J	`jnl`	Message-passing algorithms for a SIMD torus with coteries. SIGARCH Comput. Archit. News Martin C. Herbordt, Charles C. Weems, James C. Corbett
1991	—	`conf`	Multi-associativity: A Framework for Solving Multiple Non-uniform Problem Instances Simultaneously on SIMD Arrays. ICPP (3) Martin C. Herbordt, Charles C. Weems
1990	B	`conf`	Message-Passing Algorithms for a SIMD Torus with Coteries. SPAA Martin C. Herbordt, Charles C. Weems, James C. Corbett
1990	—	`conf`	Routing on the CAAPP. ICPR (2) Martin C. Herbordt, Charles C. Weems, David B. Shu