Martin C. Frith

33 papers C 1Journal 26Unranked 6
YearRankTypeTitle / Venue / Authors
2025 — conf
A Simple Way to Find Related Sequences with Position-Specific Probabilities.
RECOMB-CG
Martin C. Frith
2025 — conf
Probability-Based Sequence Comparison Finds the Oldest Ever Nuclear Mitochondrial DNA Segments in Mammalian Genomes.
RECOMB-CG
Muyao Huang, Martin C. Frith
2024 J jnl
The Statistics of Parametrized Syncmers in a Simple Mutation Process Without Spurious Matches.
J. Comput. Biol.
John L. Spouge, Pijush Das, Ye Chen, Martin C. Frith
2023 J jnl
How to optimally sample a sequence for rapid analysis.
Bioinform.
Martin C. Frith, Jim Shaw, John L. Spouge
2023 J jnl
Improved DNA-Versus-Protein Homology Search for Protein Fossils.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yin Yao, Martin C. Frith
2021 — conf
Improved DNA-versus-Protein Homology Search for Protein Fossils.
AlCoB
Yin Yao, Martin C. Frith
2021 J jnl
Minimally overlapping words for sequence similarity search.
Bioinform.
Martin C. Frith, Laurent Noé, Gregory Kucherov
2020 J jnl
How sequence alignment scores correspond to probability models.
Bioinform.
Martin C. Frith
2018 J jnl
A Simplified Description of Child Tables for Sequence Similarity Search.
IEEE ACM Trans. Comput. Biol. Bioinform.
Martin C. Frith, Anish Man Singh Shrestha
2017 J jnl
Training alignment parameters for arbitrary sequencers with LAST-TRAIN.
Bioinform.
Michiaki Hamada, Yukiteru Ono, Kiyoshi Asai, Martin C. Frith
2017 J jnl
Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads.
BMC Bioinform.
Thomas M. Poulsen, Martin C. Frith
2016 J jnl
ALP & FALP: C++ libraries for pairwise local alignment
Bioinform.
Sergey Sheetlin, Yonil Park, Martin C. Frith, John L. Spouge
2016 C ed.
Algorithms in Bioinformatics - 16th International Workshop, WABI 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings
WABI
Martin C. Frith, Christian Nørgaard Storm Pedersen
2015 — conf
A Genetic Algorithm for Motif Finding Based on Statistical Significance.
IWBBIO (1)
Josep Basha Gutierrez, Martin C. Frith, Kenta Nakai
2014 J jnl
A bioinformatician's guide to the forefront of suffix array construction algorithms.
Briefings Bioinform.
Anish Man Singh Shrestha, Martin C. Frith, Paul Horton
2014 J jnl
Frameshift alignment: statistics and post-genomic applications.
Bioinform.
Sergey L. Sheetlin, Yonil Park, Martin C. Frith, John L. Spouge
2013 J jnl
An approximate Bayesian approach for mapping paired-end DNA reads to a reference genome.
Bioinform.
Anish Man Singh Shrestha, Martin C. Frith
2012 J jnl
Adding unaligned sequences into an existing alignment using MAFFT and LAST.
Bioinform.
Kazutaka Katoh, Martin C. Frith
2012 J jnl
RecountDB: a database of mapped and count corrected transcribed sequences.
Nucleic Acids Res.
Edward Wijaya, Martin C. Frith, Kiyoshi Asai, Paul Horton
2011 J jnl
CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences.
Nucleic Acids Res.
Michiaki Hamada, Koichiro Yamada, Kengo Sato, Martin C. Frith, Kiyoshi Asai
2011 J jnl
Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection.
Bioinform.
Michiaki Hamada, Edward Wijaya, Martin C. Frith, Kiyoshi Asai
2010 — conf
In search of true reads: A classification approach to next generation sequencing data selection.
BIBM Workshops
Edward Wijaya, Jean-François Pessiot, Martin C. Frith, Wataru Fujibuchi, Kiyoshi Asai, Paul Horton
2010 J jnl
Parameters for accurate genome alignment.
BMC Bioinform.
Martin C. Frith, Michiaki Hamada, Paul Horton
2009 J jnl
MEME SUITE: tools for motif discovery and searching.
Nucleic Acids Res.
Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin C. Frith, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William Stafford Noble
2008 J jnl
Discovering Sequence Motifs with Arbitrary Insertions and Deletions.
PLoS Comput. Biol.
Martin C. Frith, Neil F. W. Saunders, Bostjan Kobe, Timothy L. Bailey
2007 J jnl
Large-scale clustering of CAGE tag expression data.
BMC Bioinform.
Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita, Martin C. Frith, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki
2004 J jnl
CARRIE web service: automated transcriptional regulatory network inference and interactive analysis.
Nucleic Acids Res.
Peter M. Haverty, Martin C. Frith, Zhiping Weng
2004 J jnl
MotifViz: an analysis and visualization tool for motif discovery.
Nucleic Acids Res.
Yutao Fu, Martin C. Frith, Peter M. Haverty, Zhiping Weng
2003 J jnl
Cluster-Buster: finding dense clusters of motifs in DNA sequences.
Nucleic Acids Res.
Martin C. Frith, Michael C. Li, Zhiping Weng
2003 J jnl
SeqVISTA: a graphical tool for sequence feature visualization and comparison.
BMC Bioinform.
Zhenjun Hu, Martin C. Frith, Tianhua Niu, Zhiping Weng
2003 J jnl
Theatre: a software tool for detailed comparative analysis and visualization of genomic sequence.
Nucleic Acids Res.
Yvonne J. K. Edwards, Tim J. Carver, Tanya Vavouri, Martin C. Frith, Martin J. Bishop, Greg Elgar
2001 J jnl
Detection of cis -element clusters in higher eukaryotic DNA.
Bioinform.
Martin C. Frith, Ulla Hansen, Zhiping Weng
1998 — conf
Theatre: A Novel Tool For The Comparative Investigation and Display of Evolutionary Diversity of Functional and Structural Features in DNA Sequences.
German Conference on Bioinformatics
Yvonne J. K. Edwards, Martin C. Frith, Greg Elgar, Martin J. Bishop