Martijn J. Schuemie

61 papers B 1Misc 3Journal 46Unranked 11

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	PDA in Action: Ten Principles for High-Quality Multi-Site Clinical Evidence Generation. CoRR Yong Chen, Jiayi Tong, Yiwen Lu, Rui Duan, Chongliang Luo, Marc A. Suchard, Patrick B. Ryan, Andrew E. Williams, John H. Holmes, Jason H. Moore, Hua Xu, Yun Lu, Raymond J. Carroll, Scott L. Zeger, George Hripcsak, Martijn J. Schuemie
2026	J	`jnl`	Transfer-learning on federated observational healthcare data for prediction models using Bayesian sparse logistic regression with informed priors. J. Am. Medical Informatics Assoc. Kelly Mohe Li, Jenna Marie Reps, Akihiko Nishimura, Martijn J. Schuemie, Marc A. Suchard
2025	J	`jnl`	COLA-GLM: collaborative one-shot and lossless algorithms of generalized linear models for decentralized observational healthcare data. npj Digit. Medicine Qiong Wu, Jenna Marie Reps, Lu Li, Bingyu Zhang, Yiwen Lu, Jiayi Tong, Dazheng Zhang, Thomas Lumley, Milou T. Brand, Mui Van Zandt, Thomas Falconer, Xing He, Yu Huang, Haoyang Li, Chao Yan, Guojun Tang, Andrew E. Williams, Fei Wang, Jiang Bian, Bradley A. Malin, George Hripcsak, Martijn J. Schuemie, Yun Lu, Steve Drew, Jiayu Zhou, David A. Asch, Yong Chen
2025	J	`jnl`	Evaluation of the impact of defining observable time in real-world data on outcome incidence. J. Am. Medical Informatics Assoc. Clair Blacketer, Frank J. DeFalco, Mitchell M. Conover, Patrick B. Ryan, Martijn J. Schuemie, Peter R. Rijnbeek
2025	J	`jnl`	Objective study validity diagnostics: a framework requiring pre-specified, empirical verification to increase trust in the reliability of real-world evidence. J. Am. Medical Informatics Assoc. Mitchell Conover, Patrick B. Ryan, Yong Chen, Marc A. Suchard, George Hripcsak, Martijn J. Schuemie
2025	J	`jnl`	Standardized patient profile review using large language models for case adjudication in observational research. npj Digit. Medicine Martijn J. Schuemie, Anna Ostropolets, Aleh Zhuk, Uladzislau Korsik, Seung In Seo, Marc A. Suchard, George Hripcsak, Patrick B. Ryan
2024	J	`jnl`	Massive Parallelization of Massive Sample-Size Survival Analysis. J. Comput. Graph. Stat. Jianxiao Yang, Martijn J. Schuemie, Xiang Ji, Marc A. Suchard
2024	J	`jnl`	OHDSI Standardized Vocabularies - a large-scale centralized reference ontology for international data harmonization. J. Am. Medical Informatics Assoc. Christian G. Reich, Anna Ostropolets, Patrick B. Ryan, Peter R. Rijnbeek, Martijn J. Schuemie, Alexander Davydov, Dmitry Dymshyts, George Hripcsak
2023	J	`jnl`	European Health Data & Evidence Network - learnings from building out a standardized international health data network. J. Am. Medical Informatics Assoc. Erica A. Voss, Clair Blacketer, Sebastiaan van Sandijk, Maxim Moinat, Michael Kallfelz, Michel Van Speybroeck, Daniel Prieto-Alhambra, Martijn J. Schuemie, Peter R. Rijnbeek
2023	—	`conf`	Health-Analytics Data to Evidence Suite (HADES): Open-Source Software for Observational Research. MedInfo Martijn J. Schuemie, Jenna Reps, Adam Black, Frank J. DeFalco, Lee Evans, Egill A. Fridgeirsson, James P. Gilbert, Chris Knoll, Martin Lavallee, Gowtham A. Rao, Peter R. Rijnbeek, Katy Sadowski, Anthony G. Sena, Joel N. Swerdel, Ross D. Williams, Marc A. Suchard
2023	J	`jnl`	Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes. J. Biomed. Informatics Qiong Wu, Martijn J. Schuemie, Marc A. Suchard, Patrick B. Ryan, George Hripcsak, Charles A. Rohde, Yong Chen
2022	J	`jnl`	Adjusting for indirectly measured confounding using large-scale propensity score. J. Biomed. Informatics Linying Zhang, Yixin Wang, Martijn J. Schuemie, David M. Blei, George Hripcsak
2022	J	`jnl`	Learning patient-level prediction models across multiple healthcare databases: evaluation of ensembles for increasing model transportability. BMC Medical Informatics Decis. Mak. Jenna Marie Reps, Ross D. Williams, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek
2022	J	`jnl`	PheValuator 2.0: Methodological improvements for the PheValuator approach to semi-automated phenotype algorithm evaluation. J. Biomed. Informatics Joel N. Swerdel, Martijn J. Schuemie, Gayle Murray, Patrick B. Ryan
2022	J	`jnl`	dPQL: a lossless distributed algorithm for generalized linear mixed model with application to privacy-preserving hospital profiling. J. Am. Medical Informatics Assoc. Chongliang Luo, Md. Nazmul Islam, Natalie E. Sheils, John Buresh, Martijn J. Schuemie, Jalpa A. Doshi, Rachel M. Werner, David A. Asch, Yong Chen
2021	J	`jnl`	A standardized analytics pipeline for reliable and rapid development and validation of prediction models using observational health data. Comput. Methods Programs Biomed. Sara Khalid, Cynthia Yang, Clair Blacketer, Talita Duarte-Salles, Sergio Fernández-Bertolín, Chungsoo Kim, Rae Woong Park, Jimyung Park, Martijn J. Schuemie, Anthony G. Sena, Marc A. Suchard, Seng Chan You, Peter R. Rijnbeek, Jenna Marie Reps
2021	J	`jnl`	An empirical analysis of dealing with patients who are lost to follow-up when developing prognostic models using a cohort design. BMC Medical Informatics Decis. Mak. Jenna Marie Reps, Peter R. Rijnbeek, Alana Cuthbert, Patrick B. Ryan, Nicole Pratt, Martijn J. Schuemie
2021	J	`jnl`	Design matters in patient-level prediction: evaluation of a cohort vs. case-control design when developing predictive models in observational healthcare datasets. J. Big Data Jenna Marie Reps, Patrick B. Ryan, Peter R. Rijnbeek, Martijn J. Schuemie
2021	J	`jnl`	Erratum to: Large-Scale Evidence Generation and Evaluation across a Network of Databases (LEGEND): Assessing Validity Using Hypertension as a Case Study. J. Am. Medical Informatics Assoc. Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard
2020	Misc	`conf`	Causal Inference from Observational Healthcare Data: Implications, Impacts and Innovations. AMIA George Hripcsak, David M. Blei, Elias Bareinboim, Martijn J. Schuemie, Linying Zhang
2020	Misc	`conf`	Evaluation of Large-scale Propensity Score Modeling and Covariate Balance on Potential Unmeasured Confounding in Observational Research. AMIA Ruijun Chen, Martijn J. Schuemie, Marc A. Suchard, Anna Ostropolets, Linying Zhang, Patrick B. Ryan, George Hripcsak
2020	J	`jnl`	Large-scale evidence generation and evaluation across a network of databases (LEGEND): assessing validity using hypertension as a case study. J. Am. Medical Informatics Assoc. Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard
2020	J	`jnl`	Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm. J. Am. Medical Informatics Assoc. Rui Duan, Mary Regina Boland, Zixuan Liu, Yue Liu, Howard H. Chang, Hua Xu, Haitao Chu, Christopher H. Schmid, Christopher B. Forrest, John H. Holmes, Martijn J. Schuemie, Jesse A. Berlin, Jason H. Moore, Yong Chen
2020	J	`jnl`	Learning from local to global: An efficient distributed algorithm for modeling time-to-event data. J. Am. Medical Informatics Assoc. Rui Duan, Chongliang Luo, Martijn J. Schuemie, Jiayi Tong, C. Jason Liang, Howard H. Chang, Mary Regina Boland, Jiang Bian, Hua Xu, John H. Holmes, Christopher B. Forrest, Sally C. Morton, Jesse A. Berlin, Jason H. Moore, Kevin B. Mahoney, Yong Chen
2020	J	`jnl`	Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND). J. Am. Medical Informatics Assoc. Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard
2018	J	`jnl`	Design and implementation of a standardized framework to generate and evaluate patient-level prediction models using observational healthcare data. J. Am. Medical Informatics Assoc. Jenna Marie Reps, Martijn J. Schuemie, Marc A. Suchard, Patrick B. Ryan, Peter R. Rijnbeek
2018	J	`jnl`	Uncovering exposures responsible for birth season - disease effects: a global study. J. Am. Medical Informatics Assoc. Mary Regina Boland, Pradipta Parhi, Li Li, Riccardo Miotto, Robert J. Carroll, Usman Iqbal, Phung-Anh (Alex) Nguyen, Martijn J. Schuemie, Seng Chan You, Donahue Smith, Sean D. Mooney, Patrick B. Ryan, Yu-Chuan (Jack) Li, Rae Woong Park, Joshua C. Denny, Joel T. Dudley, George Hripcsak, Pierre Gentine, Nicholas P. Tatonetti
2017	J	`jnl`	Accuracy of an automated knowledge base for identifying drug adverse reactions. J. Biomed. Informatics Erica A. Voss, Richard D. Boyce, Patrick B. Ryan, Johan van der Lei, Peter R. Rijnbeek, Martijn J. Schuemie
2017	J	`jnl`	Toward multimodal signal detection of adverse drug reactions. J. Biomed. Informatics Rave Harpaz, William DuMouchel, Martijn J. Schuemie, Olivier Bodenreider, Carol Friedman, Eric Horvitz, Anna Ripple, Alfred Sorbello, Ryen W. White, Rainer Winnenburg, Nigam H. Shah
2016	J	`jnl`	Hierarchical models for multiple, rare outcomes using massive observational healthcare databases. Stat. Anal. Data Min. Trevor R. Shaddox, Patrick B. Ryan, Martijn J. Schuemie, David Madigan, Marc A. Suchard
2015	J	`jnl`	Feasibility and utility of applications of the common data model to multiple, disparate observational health databases. J. Am. Medical Informatics Assoc. Erica A. Voss, Rupa Makadia, Amy Matcho, Qianli Ma, Chris Knoll, Martijn J. Schuemie, Frank J. DeFalco, Ajit Londhe, Vivienne J. Zhu, Patrick B. Ryan
2015	—	`conf`	Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers. MedInfo George Hripcsak, Jon D. Duke, Nigam H. Shah, Christian G. Reich, Vojtech Huser, Martijn J. Schuemie, Marc A. Suchard, Rae Woong Park, Ian Chi Kei Wong, Peter R. Rijnbeek, Johan van der Lei, Nicole Pratt, G. Niklas Norén, Yu-Chuan Li, Paul E. Stang, David Madigan, Patrick B. Ryan
2014	J	`jnl`	ContextD: an algorithm to identify contextual properties of medical terms in a Dutch clinical corpus. BMC Bioinform. Zubair Afzal, Ewoud Pons, Ning Kang, Miriam C. J. M. Sturkenboom, Martijn J. Schuemie, Jan A. Kors
2014	Misc	`conf`	Transforming NHANES Database to the OMOP Common Data Model. AMIA Vivienne J. Zhu, Rupa Makadia, Amy Matcho, Martijn J. Schuemie, Patrick B. Ryan
2013	J	`jnl`	Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project. J. Am. Medical Informatics Assoc. Paul Avillach, Preciosa M. Coloma, Rosa Gini, Martijn J. Schuemie, Fleur Mougin, Jean-Charles Dufour, Giampiero Mazzaglia, Carlo Giaquinto, Carla Fornari, Ron Herings, Mariam Molokhia, Lars Pedersen, Annie Fourrier-Réglat, Marius Fieschi, Miriam C. J. M. Sturkenboom, Johan van der Lei, Antoine Pariente, Gianluca Trifirò
2013	J	`jnl`	Improving sensitivity of machine learning methods for automated case identification from free-text electronic medical records. BMC Medical Informatics Decis. Mak. Zubair Afzal, Martijn J. Schuemie, Jan C. van Blijderveen, Elif F. Sen, Miriam C. J. M. Sturkenboom, Jan A. Kors
2011	—	`conf`	DutchHatTrick: Semantic Query Modeling, ConText, Section Detection, and Match Score Maximization. TREC Martijn J. Schuemie, Dolf Trieschnigg, Edgar Meij
2011	J	`jnl`	Literature-aided interpretation of gene expression data with the weighted global test. Briefings Bioinform. Rob Jelier, Jelle J. Goeman, Kristina M. Hettne, Martijn J. Schuemie, Johan T. den Dunnen, Peter A. C. 't Hoen
2010	J	`jnl`	A Concept Annotation System for Clinical Records CoRR Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors
2010	—	`conf`	A Concept Annotation System for Clinical Records. SWAT4LS Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors
2010	J	`jnl`	GeneE: Gene and protein query expansion with disambiguation. Bioinform. Martijn J. Schuemie, Ning Kang, Maarten L. Hekkelman, Jan A. Kors
2010	J	`jnl`	Rewriting and suppressing UMLS terms for improved biomedical term identification. J. Biomed. Semant. Kristina M. Hettne, Erik M. van Mulligen, Martijn J. Schuemie, Bob J. A. Schijvenaars, Jan A. Kors
2009	J	`jnl`	A dictionary to identify small molecules and drugs in free text. Bioinform. Kristina M. Hettne, Rob H. Stierum, Martijn J. Schuemie, Peter J. M. Hendriksen, Bob J. A. Schijvenaars, Erik M. van Mulligen, Jos Kleinjans, Jan A. Kors
2009	J	`jnl`	Literature-based priors for gene regulatory networks. Bioinform. Emma Steele, Allan Tucker, Peter A. C. 't Hoen, Martijn J. Schuemie
2009	J	`jnl`	Structuring and extracting knowledge for the support of hypothesis generation in molecular biology. BMC Bioinform. Marco Roos, M. Scott Marshall, Andrew P. Gibson, Martijn J. Schuemie, Edgar Meij, Sophia Katrenko, Willem Robert van Hage, Konstantinos Krommydas, Pieter W. Adriaans
2008	J	`jnl`	Jane: suggesting journals, finding experts. Bioinform. Martijn J. Schuemie, Jan A. Kors
2008	J	`jnl`	Literature-based concept profiles for gene annotation: The issue of weighting. Int. J. Medical Informatics Rob Jelier, Martijn J. Schuemie, Peter-Jan Roes, Erik M. van Mulligen, Jan A. Kors
2007	—	`conf`	Cross Language Information Retrieval for Biomedical Literature. TREC Martijn J. Schuemie, Dolf Trieschnigg, Wessel Kraaij
2007	J	`jnl`	Do Self-Statements Enhance the Effectiveness of Virtual Reality Exposure Therapy? A Comparative Evaluation in Acrophobia. Cyberpsychology Behav. Soc. Netw. Merel Krijn, Paul M. G. Emmelkamp, Ragnar Olafsson, Martijn J. Schuemie, Charles van der Mast
2007	J	`jnl`	Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification. J. Biomed. Informatics Martijn J. Schuemie, Barend Mons, Marc Weeber, Jan A. Kors
2006	—	`conf`	Concept Based Document Retrieval for Genomics Literature. TREC Dolf Trieschnigg, Wessel Kraaij, Martijn J. Schuemie
2005	—	`conf`	TREC 2005 Genomics Track A Concept-Based Approach to Text Categorization. TREC Bob J. A. Schijvenaars, Martijn J. Schuemie, Erik M. van Mulligen, Marc Weeber, Rob Jelier, Barend Mons, Jan A. Kors, Wessel Kraaij
2005	J	`jnl`	Thesaurus-based disambiguation of gene symbols. BMC Bioinform. Bob J. A. Schijvenaars, Barend Mons, Marc Weeber, Martijn J. Schuemie, Erik M. van Mulligen, Hester M. Wain, Jan A. Kors
2005	J	`jnl`	Word Sense Disambiguation in the Biomedical Domain: An Overview. J. Comput. Biol. Martijn J. Schuemie, Jan A. Kors, Barend Mons
2004	—	`conf`	Contextual Annotation of Web Pages for Interactive Browsing. MedInfo Erik M. van Mulligen, Mario Diwersy, Bob J. A. Schijvenaars, Marc Weeber, C. Christiaan van der Eijk, Rob Jelier, Martijn J. Schuemie, Jan A. Kors, Barend Mons
2004	J	`jnl`	Distribution of information in biomedical abstracts and full-text publications. Bioinform. Martijn J. Schuemie, Marc Weeber, Bob J. A. Schijvenaars, Erik M. van Mulligen, C. Christiaan van der Eijk, Rob Jelier, Barend Mons, Jan A. Kors
2003	—	`conf`	Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification. TREC Rob Jelier, Martijn J. Schuemie, C. Christiaan van der Eijk, Marc Weeber, Erik M. van Mulligen, Bob J. A. Schijvenaars, Barend Mons, Jan A. Kors
2002	—	`conf`	Effect of an external viewpoint on therapist performance in virtual reality exposure therapy. CHI Extended Abstracts Martijn J. Schuemie
2001	J	`jnl`	Research on Presence in Virtual Reality: A Survey. Cyberpsychology Behav. Soc. Netw. Martijn J. Schuemie, Peter van der Straaten, Merel Krijn, Charles van der Mast
2000	—	`conf`	Design of virtual reality exposure therapy systems: task analysis. CHI Extended Abstracts Martijn J. Schuemie
1999	B	`conf`	Information retrieval systems using an associative conceptual space. ESANN Jan van den Berg, Martijn J. Schuemie